EnhancerDB
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Enhancers that regulate COL9A2[ENSG00000049089.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 40683165 40687315 enh271 40783488 96173
Blood (Karpas-422)
chr1 40690005 40694155 enh49717 40783488 89333
Large Intestine
chr1 40728129 40732279 enh61827 40783488 51209
Esophagus
chr1 40738085 40744735 enh90677 40783488 38753
Bone Marrow (K562) Epithelial (MCF-7)
chr1 40779203 40779606 vista1287 40783488 3882
VISTA
chr1 40801205 40805395 enh49718 40783488 17717
Large Intestine Stomach
chr1 40805764 40805964 vista1288 40783488 22276
VISTA
chr1 40807940 40808076 vista1289 40783488 24452
VISTA
chr1 40812805 40824595 enh272 40783488 29317
Blood (OCI-LY7) Stomach Blood (Karpas-422) Blood (GM12878)
chr1 40818847 40819033 vista1290 40783488 35359
VISTA
chr1 40841336 40841595 vista1291 40783488 57848
VISTA
chr1 40843025 40858135 enh273 40783488 59537
Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Brain (SK-N-MC) Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Muscle (A673) Placenta Thyroid Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Uterus Thymus Heart
chr1 40847285 40847634 vista1292 40783488 63797
VISTA
chr1 40848967 40849502 vista1293 40783488 65479
VISTA
chr1 40851431 40851768 vista1294 40783488 67943
VISTA
chr1 40853198 40853308 vista1295 40783488 69710
VISTA
chr1 40860574 40860824 vista1296 40783488 77086
VISTA
chr1 40864002 40869737 enh60121 40783488 80514
Bone Marrow (K562) Blood (OCI-LY7) Blood (GM12878)
chr1 40866111 40866454 vista1297 40783488 82623
VISTA
Transcript facotrs that regulate COL9A2[ENSG00000049089.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 40779237 40779573 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 40783488 3915 107802916
chr1 40779247 40779253 ZNF354C JASPAR yes 40783488 4235 118276700
chr1 40779262 40779280 ESR1 JASPAR yes 40783488 4208 118276701
chr1 40779264 40779268 H4TF2 TRANSFAC yes 40783488 4220 118276702
chr1 40779275 40779279 NFE TRANSFAC yes 40783488 4209 118276703
chr1 40779286 40779299 EOMES JASPAR yes 40783488 4189 118276704
chr1 40779288 40779292 ESR1 TRANSFAC yes 40783488 4196 118276705
chr1 40779288 40779298 TBR1 JASPAR yes 40783488 4190 118276706
chr1 40779288 40779299 TBX2 JASPAR yes 40783488 4189 118276707
chr1 40779289 40779299 TBX21 JASPAR yes 40783488 4189 118276708
chr1 40779290 40779298 MGA JASPAR yes 40783488 4190 118276709
chr1 40779290 40779298 TBX15 JASPAR yes 40783488 4190 118276710
chr1 40779290 40779298 TBX1 JASPAR yes 40783488 4190 118276711
chr1 40779290 40779298 TBX4 JASPAR yes 40783488 4190 118276712
chr1 40779290 40779298 TBX5 JASPAR yes 40783488 4190 118276713
chr1 40779299 40779310 NFE2L2 JASPAR yes 40783488 4178 118276714
chr1 40779302 40779315 TFAP2A JASPAR yes 40783488 4173 118276715
chr1 40779307 40779322 NR2C2 JASPAR yes 40783488 4166 118276716
chr1 40779309 40779326 RXRA JASPAR yes 40783488 4162 118276717
chr1 40779310 40779314 LFA1 TRANSFAC yes 40783488 4174 118276718
chr1 40779327 40779340 NFKB2 JASPAR yes 40783488 4148 118276719
chr1 40779333 40779354 ZNF263 JASPAR yes 40783488 4134 118276720
chr1 40779359 40779373 RORA JASPAR yes 40783488 4115 118276721
chr1 40779370 40779373 MYB TRANSFAC yes 40783488 4115 118276722
chr1 40779394 40779408 EBF1 JASPAR yes 40783488 4080 118276723
chr1 40779395 40779406 EBF1 JASPAR yes 40783488 4082 118276724
chr1 40779395 40779408 TFAP2A JASPAR yes 40783488 4080 118276725
chr1 40779395 40779408 TFAP2B JASPAR yes 40783488 4080 118276726
chr1 40779395 40779408 TFAP2C JASPAR yes 40783488 4080 118276727
chr1 40779396 40779411 TFAP2A JASPAR yes 40783488 4077 118276728
chr1 40779396 40779411 TFAP2C JASPAR yes 40783488 4077 118276729
chr1 40779397 40779408 EBF1 JASPAR yes 40783488 4080 118276730
chr1 40779397 40779408 TFAP2A JASPAR yes 40783488 4080 118276731
chr1 40779397 40779408 TFAP2B JASPAR yes 40783488 4080 118276732
chr1 40779398 40779407 TFAP2A JASPAR yes 40783488 4081 118276733
chr1 40779423 40779436 NR2F1 JASPAR yes 40783488 4052 118276734
chr1 40779425 40779436 ESRRA JASPAR yes 40783488 4052 118276735
chr1 40779425 40779436 ESRRB JASPAR yes 40783488 4052 118276736
chr1 40779426 40779434 NR4A2 JASPAR yes 40783488 4054 118276737
chr1 40779435 40779440 SP1 TRANSFAC yes 40783488 4048 118276738
chr1 40779435 40779449 PLAG1 JASPAR yes 40783488 4039 118276739
chr1 40779437 40779451 EBF1 JASPAR yes 40783488 4037 118276740
chr1 40779438 40779449 EBF1 JASPAR yes 40783488 4039 118276741
chr1 40779447 40779462 RUNX2 JASPAR yes 40783488 4026 118276742
chr1 40779463 40779473 BARHL2 JASPAR yes 40783488 4015 118276743
chr1 40779481 40779492 FOS JASPAR yes 40783488 3996 118276744
chr1 40779481 40779492 FOSL1 JASPAR yes 40783488 3996 118276745
chr1 40779481 40779492 JUND JASPAR yes 40783488 3996 118276746
chr1 40779481 40779492 NFE2 JASPAR yes 40783488 3996 118276747
chr1 40779482 40779491 JDP2 JASPAR yes 40783488 3997 118276748
chr1 40779482 40779493 FOSL2 JASPAR yes 40783488 3995 118276749
chr1 40779482 40779493 JUNB JASPAR yes 40783488 3995 118276750
chr1 40779482 40779496 JUN JASPAR yes 40783488 3992 118276751
chr1 40779483 40779494 BATF JASPAR yes 40783488 3994 118276752
chr1 40779483 40779503 TP53 JASPAR yes 40783488 3985 118276753
chr1 40779489 40779504 TFAP2A JASPAR yes 40783488 3984 118276754
chr1 40779489 40779504 TFAP2C JASPAR yes 40783488 3984 118276755
chr1 40779490 40779501 TFAP2A JASPAR yes 40783488 3987 118276756
chr1 40779490 40779501 TFAP2B JASPAR yes 40783488 3987 118276757
chr1 40779490 40779501 TFAP2C JASPAR yes 40783488 3987 118276758
chr1 40779490 40779502 INSM1 JASPAR yes 40783488 3986 118276759
chr1 40779491 40779500 TFAP2A JASPAR yes 40783488 3988 118276760
chr1 40779492 40779512 RREB1 JASPAR yes 40783488 3976 118276761
chr1 40779494 40779509 RUNX2 JASPAR yes 40783488 3979 118276762
chr1 40779501 40779515 NR2F1 JASPAR yes 40783488 3973 118276763
chr1 40779503 40779515 INSM1 JASPAR yes 40783488 3973 118276764
chr1 40779506 40779519 NR2F1 JASPAR yes 40783488 3969 118276765
chr1 40779510 40779514 ESR1 TRANSFAC yes 40783488 3974 118276766
chr1 40779514 40779535 ZNF263 JASPAR yes 40783488 3953 118276767
chr1 40779515 40779536 ZNF263 JASPAR yes 40783488 3952 118276768
chr1 40779516 40779521 ETS2 TRANSFAC yes 40783488 3967 118276769
chr1 40779517 40779538 ZNF263 JASPAR yes 40783488 3950 118276770
chr1 40779525 40779531 PEA3 TRANSFAC yes 40783488 3957 118276771
chr1 40779538 40779542 LFA1 TRANSFAC yes 40783488 3946 118276772
chr1 40779548 40779558 NFKB1 JASPAR yes 40783488 3930 118276773
chr1 40779590 40779596 HiNF-A TRANSFAC yes 40783488 3892 118276774
SNPs associated with COL9A2[ENSG00000049089.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 40652754 rs10710518 AG A 113405 Esophagus 0.250412 253929
chr1 40097141 rs145971519 T C 669018 Esophagus 0.0662995 249844
chr1 40712796 rs72670630 G C 53363 Pancreas 2.07343e-11 254177
chr1 40286877 rs76736263 G A 479282 Ovary 0.286034 250907
chr1 41386532 rs11804913 T A 603044 Thyroid 0.0171875 258004
chr1 40396582 rs6694956 C T 369577 Stomach 0.187265 251901
Details of COL9A2[ENSG00000049089.9]
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Genomic Location chr1:40766159-40783488[-]
TSS 40783488
Gene Name COL9A2
Ensembl ID ENSG00000049089.9
ENTREZID 1298
Uniprot
D3DPU8
Q14055
Protein Name
alpha 2
isoform CRA_a
type IX
Collagen
Collagen alpha-2(IX) chain
Expression levels of COL9A2[ENSG00000049089.9]
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