EnhancerDB
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Enhancers that regulate GCN1L1[ENSG00000089154.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 120537225 120541375 enh109578 120632513 91138
Stomach
chr12 120546565 120551095 enh2635 120632513 81418
Thymus Placenta Blood (Karpas-422) Neural Stem Cells (H9) Blood (T-cell) Stomach
chr12 120559385 120564295 enh15042 120632513 68218
Placenta
chr12 120600271 120604375 enh60426 120632513 28138
Blood (OCI-LY7)
chr12 120616925 120621075 enh80413 120632513 11438
Prostate (PC-3)
chr12 120639993 120640274 vista15110 120632513 7480
VISTA
chr12 120660005 120685163 enh2636 120632513 27492
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr12 120665661 120665757 vista15111 120632513 33148
VISTA
chr12 120666780 120666906 vista15112 120632513 34267
VISTA
chr12 120668258 120668871 vista15113 120632513 35745
VISTA
chr12 120669025 120669761 vista15114 120632513 36512
VISTA
chr12 120672500 120673016 vista15115 120632513 39987
VISTA
chr12 120675783 120676003 vista15116 120632513 43270
VISTA
chr12 120686365 120701975 enh15043 120632513 53852
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Lung (PC-9) Esophagus Bone (Osteoblast) Lung Blood (GM12878) Stomach Muscle (A673) Placenta Thyroid Muscle (Myoblast) Pancreas Uterus Blood (T-cell) Heart
chr12 120689817 120690140 vista15117 120632513 57304
VISTA
chr12 120700086 120700381 vista15118 120632513 67573
VISTA
chr12 120700935 120701192 vista15119 120632513 68422
VISTA
chr12 120710425 120716755 enh15044 120632513 77912
Placenta Brain (SK-N-MC)
chr12 120716965 120734448 enh2637 120632513 84452
Prostate (PC-3) Prostate (RWPE1) Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Uterus Epithelial (MCF-7)
chr12 120728531 120728703 vista15120 120632513 96018
VISTA
Transcript facotrs that regulate GCN1L1[ENSG00000089154.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with GCN1L1[ENSG00000089154.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 120720038 rs7960743 T C 87525 Esophagus 0.00652991 2945170
chr12 120709064 rs3999561 G A 76551 Heart 0.0141762 2945005
chr12 120661977 rs4767884 T C 29464 Heart 0.0457831 2944559
chr12 120661977 rs4767884 T C 29464 Breast 0.196868 2944559
chr12 120856874 rs1634536 T A 224361 Uterus 0.457402 2946060
chr12 120449431 rs202086794 T TA 115576 Adrenal 0.189987 2943428
Details of GCN1L1[ENSG00000089154.6]
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Genomic Location chr12:120565007-120632513[-]
TSS 120632513
Gene Name GCN1L1
Ensembl ID ENSG00000089154.6
ENTREZID
Uniprot
Protein Name
Alternative protein GCN1L1
GCN1 general control of amino-acid synthesis 1-like 1
eIF-2-alpha kinase activator GCN1
Expression levels of GCN1L1[ENSG00000089154.6]
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