EnhancerDB
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Enhancers that regulate CDX1[ENSG00000113722.12]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr5 149442364 149446560 enh102783 149546358 99798
Bone (Osteoblast)
chr5 149456060 149456090 vista49636 149546358 90268
VISTA
chr5 149480485 149491755 enh22709 149546358 54603
Brain (SK-N-MC) Large Intestine Placenta Peripheral Blood (MM.1S) Lung (PC-9) Thymus
chr5 149503243 149503437 vista49637 149546358 42921
VISTA
chr5 149504465 149514577 enh22710 149546358 31781
Placenta Bone (Osteoblast) Heart
chr5 149515023 149530526 enh22711 149546358 15832
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung Lung (A549) Stomach Muscle (A673) Placenta Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Neural Stem Cells (H9) Heart
chr5 149518246 149518623 vista49638 149546358 27735
VISTA
chr5 149522462 149523132 vista49639 149546358 23226
VISTA
chr5 149525289 149525473 vista49640 149546358 20885
VISTA
chr5 149533722 149534084 vista49641 149546358 12274
VISTA
chr5 149550825 149562044 enh22712 149546358 4467
Pancreas Placenta Large Intestine Heart
chr5 149588179 149596505 enh38516 149546358 41821
Astrocyte Bone (Osteoblast) Pancreas Uterus Stomach
chr5 149613045 149617395 enh100432 149546358 66687
Uterus Kidney
chr5 149640145 149644295 enh84017 149546358 93787
Prostate (PC-3)
chr5 149644445 149652453 enh88965 149546358 98087
Pancreas Prostate (RWPE1)
Transcript facotrs that regulate CDX1[ENSG00000113722.12]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr5 149550826 149550836 MAX JASPAR yes 149546358 4468 66864188
chr5 149550826 149550837 USF2 JASPAR yes 149546358 4468 66864189
chr5 149550826 149550838 HES5 JASPAR yes 149546358 4468 66864190
chr5 149550826 149550838 HES7 JASPAR yes 149546358 4468 66864191
chr5 149550880 149550884 YY1 TRANSFAC yes 149546358 4522 66864192
chr5 149550885 149550889 YY1 TRANSFAC yes 149546358 4527 66864193
chr5 149550891 149550912 IRF1 JASPAR yes 149546358 4533 66864194
chr5 149550892 149550913 IRF1 JASPAR yes 149546358 4534 66864195
chr5 149550895 149550899 YY1 TRANSFAC yes 149546358 4537 66864196
chr5 149550896 149550911 LEF1 JASPAR yes 149546358 4538 66864197
chr5 149550896 149550917 IRF1 JASPAR yes 149546358 4538 66864198
chr5 149550898 149550913 FOXP1 JASPAR yes 149546358 4540 66864199
chr5 149550903 149550918 FOXP1 JASPAR yes 149546358 4545 66864200
chr5 149550928 149550939 NFE2L2 JASPAR yes 149546358 4570 66864201
chr5 149550979 149550988 SP1 TRANSFAC yes 149546358 4621 66864202
chr5 149550980 149550988 SP1 TRANSFAC yes 149546358 4622 66864203
chr5 149550980 149550990 SP1 JASPAR yes 149546358 4622 66864204
chr5 149550994 149551004 SREBF2 JASPAR yes 149546358 4636 66864205
chr5 149551000 149551018 MAFF JASPAR yes 149546358 4642 66864206
chr5 149551002 149551023 MAFG JASPAR yes 149546358 4644 66864207
chr5 149551019 149551025 MZF1 JASPAR yes 149546358 4661 66864208
chr5 149551023 149551035 NHLH1 JASPAR yes 149546358 4665 66864209
chr5 149551024 149551034 NHLH1 JASPAR yes 149546358 4666 66864210
chr5 149551038 149551056 ESR2 JASPAR yes 149546358 4680 66864211
chr5 149551039 149551051 HINFP JASPAR yes 149546358 4681 66864212
chr5 149551047 149551055 MEIS2 JASPAR yes 149546358 4689 66864213
chr5 149551047 149551055 MEIS3 JASPAR yes 149546358 4689 66864214
chr5 149551048 149551052 NFE TRANSFAC yes 149546358 4690 66864215
chr5 149551049 149551066 PAX1 JASPAR yes 149546358 4691 66864216
chr5 149551049 149551066 PAX9 JASPAR yes 149546358 4691 66864217
chr5 149551050 149551069 PAX5 JASPAR yes 149546358 4692 66864218
chr5 149551053 149551062 HIC2 JASPAR yes 149546358 4695 66864219
chr5 149551069 149551084 MEF2A JASPAR yes 149546358 4711 66864220
chr5 149551070 149551085 MEF2C JASPAR yes 149546358 4712 66864221
chr5 149551071 149551083 MEF2A JASPAR yes 149546358 4713 66864222
chr5 149551071 149551083 MEF2B JASPAR yes 149546358 4713 66864223
chr5 149551071 149551083 MEF2D JASPAR yes 149546358 4713 66864224
chr5 149551073 149551077 YY1 TRANSFAC yes 149546358 4715 66864225
chr5 149551088 149551101 NFKB1 JASPAR yes 149546358 4730 66864226
chr5 149551088 149551101 NFKB2 JASPAR yes 149546358 4730 66864227
chr5 149551096 149551101 MYC TRANSFAC yes 149546358 4738 66864228
chr5 149551123 149551136 NR2F1 JASPAR yes 149546358 4765 66864229
chr5 149551139 149551144 SP1 TRANSFAC yes 149546358 4781 66864230
chr5 149551142 149551156 PLAG1 JASPAR yes 149546358 4784 66864231
chr5 149551154 149551160 MZF1 JASPAR yes 149546358 4796 66864232
chr5 149551178 149551189 FOSL2 JASPAR yes 149546358 4820 66864233
chr5 149551184 149551189 MYC TRANSFAC yes 149546358 4826 66864234
chr5 149551206 149551210 YY1 TRANSFAC yes 149546358 4848 66864235
chr5 149551211 149551217 LEF1 TRANSFAC yes 149546358 4853 66864236
chr5 149551211 149551217 SOX10 JASPAR yes 149546358 4853 66864237
chr5 149551214 149551225 HOXC11 JASPAR yes 149546358 4856 66864238
chr5 149551214 149551225 HOXC12 JASPAR yes 149546358 4856 66864239
chr5 149551215 149551225 HOXD11 JASPAR yes 149546358 4857 66864240
chr5 149551228 149551247 RFX2 JASPAR yes 149546358 4870 66864241
chr5 149551232 149551236 YY1 TRANSFAC yes 149546358 4874 66864242
chr5 149551232 149551248 RFX2 JASPAR yes 149546358 4874 66864243
chr5 149551232 149551248 RFX3 JASPAR yes 149546358 4874 66864244
chr5 149551232 149551248 RFX4 JASPAR yes 149546358 4874 66864245
chr5 149551232 149551248 RFX5 JASPAR yes 149546358 4874 66864246
chr5 149551233 149551252 RFX2 JASPAR yes 149546358 4875 66864247
chr5 149551248 149551263 HSF1 JASPAR yes 149546358 4890 66864248
chr5 149551280 149551285 MYB TRANSFAC yes 149546358 4922 66864249
chr5 149551302 149551320 SRF JASPAR yes 149546358 4944 66864250
chr5 149551304 149551320 SRF JASPAR yes 149546358 4946 66864251
chr5 149551309 149551317 GATA3 JASPAR yes 149546358 4951 66864252
chr5 149551309 149551317 GATA5 JASPAR yes 149546358 4951 66864253
chr5 149551357 149551371 POU1F1 JASPAR yes 149546358 4999 66864254
chr5 149551358 149551370 POU3F1 JASPAR yes 149546358 5000 66864255
chr5 149551358 149551370 POU3F2 JASPAR yes 149546358 5000 66864256
SNPs associated with CDX1[ENSG00000113722.12], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr5 148821006 rs3073196 TCTC T 725352 Esophagus 0.169694 8607905
chr5 149854419 rs2545343 G A 290299 Heart 0.0984594 8615027
chr5 149488379 rs138678533 TG T 57979 Breast 0.0982774 8612578
chr5 148576253 rs7720260 T C 970105 Spleen 0.31538 8606269
chr5 148837555 rs353227 G A 708803 Ovary 0.316885 8608134
chr5 149525189 rs10062000 G A 21169 Thyroid 0.102681 8612909
chr5 149525189 rs10062000 G A 21169 Lung 0.00249418 8612909
chr5 150371302 rs138017706 TG T 807182 Stomach 0.317629 8617336
chr5 149202893 rs11745677 G A 343465 Adrenal 0.278998 8611330
Details of CDX1[ENSG00000113722.12]
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Genomic Location chr5:149546358-149564120[+]
TSS 149546358
Gene Name CDX1
Ensembl ID ENSG00000113722.12
ENTREZID 1044
Uniprot
P47902
Protein Name
CDX1 protein
Homeobox protein CDX-1
Expression levels of CDX1[ENSG00000113722.12]
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