EnhancerDB
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Enhancers that regulate CLDN16[ENSG00000113946.3]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 189940325 189945185 enh77172 190040330 95145
Muscle (A673) Pancreas (Panc1) Brain (SK-N-MC)
chr3 189945598 189959315 enh21217 190040330 81015
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Muscle (A673) Placenta Peripheral Blood (MM.1S) Pancreas (Panc1) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Epithelial (MCF-7)
chr3 189967965 189972175 enh77173 190040330 68155
Muscle (A673) Brain (SK-N-MC)
chr3 189973985 189980455 enh71044 190040330 59875
Liver (HepG2) Brain (SK-N-MC) Muscle (A673) Uterus Neural Stem Cells (H9)
chr3 189980909 189992755 enh21218 190040330 47575
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Astrocyte Placenta Lung (PC-9) Uterus Epithelial (MCF-7)
chr3 189997165 190001355 enh88807 190040330 38975
Pancreas Spleen Uterus Brain (SK-N-MC)
chr3 190012685 190016835 enh82913 190040330 23495
Prostate (PC-3)
chr3 190017485 190022636 enh77174 190040330 17694
Muscle (A673) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1)
chr3 190041292 190041577 vista43633 190040330 962
VISTA
chr3 190046705 190050955 enh54540 190040330 6375
Liver (HepG2) Large Intestine
chr3 190052302 190060299 enh21219 190040330 11972
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Muscle (A673) Placenta Lung (PC-9)
chr3 190060801 190067455 enh21220 190040330 20471
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Lung (A549) Muscle (A673) Placenta Thyroid Pancreas (Panc1) Uterus Stomach
chr3 190062904 190063381 vista43634 190040330 22574
VISTA
chr3 190070645 190086175 enh21221 190040330 30315
Brain (SK-N-MC) Large Intestine Placenta Uterus Lung (PC-9) Neural Stem Cells (H9)
chr3 190087065 190104935 enh21222 190040330 46735
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Lung (A549) Muscle (A673) Placenta Uterus Lung (PC-9) Neural Stem Cells (H9)
chr3 190104242 190104447 vista43635 190040330 63912
VISTA
chr3 190139954 190144656 enh100136 190040330 99624
Pancreas (Panc1) Uterus Brain (SK-N-MC) Lung (PC-9)
Transcript facotrs that regulate CLDN16[ENSG00000113946.3]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 190041292 190041303 RUNX1 JASPAR yes 190040330 962 71107719
chr3 190041293 190041303 RUNX3 JASPAR yes 190040330 963 71107720
chr3 190041294 190041303 RUNX2 JASPAR yes 190040330 964 71107721
chr3 190041309 190041314 MYB TRANSFAC yes 190040330 979 71107722
chr3 190041318 190041328 NFATC3 JASPAR yes 190040330 988 71107723
chr3 190041319 190041326 NFATC2 JASPAR yes 190040330 989 71107724
chr3 190041327 190041347 RREB1 JASPAR yes 190040330 997 71107725
chr3 190041353 190041358 SP1 TRANSFAC yes 190040330 1023 71107726
chr3 190041354 190041364 SP1 JASPAR yes 190040330 1024 71107727
chr3 190041354 190041364 ZNF740 JASPAR yes 190040330 1024 71107728
chr3 190041356 190041362 MAZ TRANSFAC yes 190040330 1026 71107729
chr3 190041357 190041367 MZF1 JASPAR yes 190040330 1027 71107730
chr3 190041361 190041366 ETS2 TRANSFAC yes 190040330 1031 71107731
chr3 190041376 190041391 FOXP1 JASPAR yes 190040330 1046 71107732
chr3 190041378 190041393 FOXP1 JASPAR yes 190040330 1048 71107733
chr3 190041382 190041396 SPI1 JASPAR yes 190040330 1052 71107734
chr3 190041394 190041405 STAT3 JASPAR yes 190040330 1064 71107735
chr3 190041405 190041419 FOXF2 JASPAR yes 190040330 1075 71107736
chr3 190041407 190041421 POU1F1 JASPAR yes 190040330 1077 71107737
chr3 190041408 190041419 FOXP2 JASPAR yes 190040330 1078 71107738
chr3 190041408 190041420 FOXI1 JASPAR yes 190040330 1078 71107739
chr3 190041408 190041420 POU3F1 JASPAR yes 190040330 1078 71107740
chr3 190041408 190041420 POU3F2 JASPAR yes 190040330 1078 71107741
chr3 190041408 190041421 POU3F3 JASPAR yes 190040330 1078 71107742
chr3 190041409 190041421 POU2F1 JASPAR yes 190040330 1079 71107743
chr3 190041410 190041418 FOXG1 JASPAR yes 190040330 1080 71107744
chr3 190041411 190041419 FOXL1 JASPAR yes 190040330 1081 71107745
chr3 190041411 190041422 PROP1 JASPAR yes 190040330 1081 71107746
chr3 190041423 190041428 GATA2 JASPAR yes 190040330 1093 71107747
chr3 190041445 190041461 RFX5 JASPAR yes 190040330 1115 71107748
chr3 190041446 190041465 RFX2 JASPAR yes 190040330 1116 71107749
chr3 190041448 190041463 RFX5 JASPAR yes 190040330 1118 71107750
chr3 190041474 190041489 PRDM1 JASPAR yes 190040330 1144 71107751
chr3 190041478 190041483 ETS2 TRANSFAC yes 190040330 1148 71107752
chr3 190041498 190041508 TBX21 JASPAR yes 190040330 1168 71107753
chr3 190041498 190041509 TBX20 JASPAR yes 190040330 1168 71107754
chr3 190041499 190041507 TBX15 JASPAR yes 190040330 1169 71107755
chr3 190041500 190041505 SP1 TRANSFAC yes 190040330 1170 71107756
chr3 190041508 190041523 HNF4G JASPAR yes 190040330 1178 71107757
chr3 190041509 190041514 ETS2 TRANSFAC yes 190040330 1179 71107758
chr3 190041537 190041541 YY1 TRANSFAC yes 190040330 1207 71107759
chr3 190041541 190041551 FIGLA JASPAR yes 190040330 1211 71107760
chr3 190041543 190041548 USF2 TRANSFAC yes 190040330 1213 71107761
chr3 190041552 190041568 ZNF143 JASPAR yes 190040330 1222 71107762
chr3 190041560 190041575 LEF1 JASPAR yes 190040330 1230 71107763
chr3 190041561 190041575 TCF7L2 JASPAR yes 190040330 1231 71107764
SNPs associated with CLDN16[ENSG00000113946.3], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 190040397 rs17501976 C T 0 Esophagus 8.1843e-32 7290102
chr3 190040397 rs17501976 C T 0 Pancreas 2.58433e-05 7290102
chr3 190040397 rs17501976 C T 0 Adrenal 1.60322e-09 7290102
Details of CLDN16[ENSG00000113946.3]
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Genomic Location chr3:190040330-190129932[+]
TSS 190040330
Gene Name CLDN16
Ensembl ID ENSG00000113946.3
ENTREZID 10686
Uniprot
Q9Y5I7
Protein Name
Claudin-16
Expression levels of CLDN16[ENSG00000113946.3]
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