EnhancerDB
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Enhancers that regulate SNX4[ENSG00000114520.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 125148331 125165114 enh7505 125239041 73927
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Liver Astrocyte Bone (Osteoblast) Stomach Blood (Karpas-422) Pancreas Epithelial (MCF-7)
chr3 125199345 125203495 enh54333 125239041 35546
Large Intestine
chr3 125200225 125200611 vista42272 125239041 38430
VISTA
chr3 125208945 125213235 enh54334 125239041 25806
Bone Marrow (K562) Large Intestine
chr3 125218273 125222567 enh86492 125239041 16474
Colon (HCT116)
chr3 125228972 125233294 enh35854 125239041 5747
Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Astrocyte Muscle (A673) Colon (HCT116) Stomach
chr3 125231315 125231583 vista42273 125239041 7458
VISTA
chr3 125235229 125235600 vista42274 125239041 3441
VISTA
chr3 125256765 125261993 enh65740 125239041 17724
Heart
chr3 125273265 125277415 enh35855 125239041 34224
Astrocyte
chr3 125302490 125312539 enh7506 125239041 63449
Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Esophagus Bone (Osteoblast) Blood (OCI-LY7) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Epithelial (MCF-7)
chr3 125319625 125324501 enh90200 125239041 80584
Cervix (HeLa-S3) Prostate (RWPE1) Thyroid Lung (PC-9) Uterus
chr3 125325325 125331255 enh20886 125239041 86284
Placenta Neural Stem Cells (H9)
chr3 125334465 125338615 enh54335 125239041 95424
Large Intestine
Transcript facotrs that regulate SNX4[ENSG00000114520.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 125235230 125235236 TBP TRANSFAC yes 125239041 3805 71044592
chr3 125235280 125235291 TBX2 JASPAR yes 125239041 3750 71044593
chr3 125235312 125235320 E2F1 JASPAR yes 125239041 3721 71044594
chr3 125235346 125235351 GATA2 JASPAR yes 125239041 3690 71044595
chr3 125235347 125235357 ESX1 JASPAR yes 125239041 3684 71044596
chr3 125235347 125235357 GBX1 JASPAR yes 125239041 3684 71044597
chr3 125235347 125235357 GBX2 JASPAR yes 125239041 3684 71044598
chr3 125235347 125235357 HESX1 JASPAR yes 125239041 3684 71044599
chr3 125235347 125235357 LBX2 JASPAR yes 125239041 3684 71044600
chr3 125235347 125235357 LHX2 JASPAR yes 125239041 3684 71044601
chr3 125235347 125235357 RAX JASPAR yes 125239041 3684 71044602
chr3 125235348 125235356 DLX6 JASPAR yes 125239041 3685 71044603
chr3 125235348 125235356 MSX2 JASPAR yes 125239041 3685 71044604
chr3 125235356 125235360 TEAD2 TRANSFAC yes 125239041 3681 71044605
chr3 125235356 125235361 TBP TRANSFAC yes 125239041 3680 71044606
chr3 125235356 125235362 TMF TRANSFAC yes 125239041 3679 71044607
chr3 125235362 125235377 PRDM1 JASPAR yes 125239041 3664 71044608
chr3 125235365 125235376 E2F6 JASPAR yes 125239041 3665 71044609
chr3 125235406 125235410 LFA1 TRANSFAC yes 125239041 3631 71044610
chr3 125235413 125235714 RUNX3 UCSC Txn Factor no Conserved 125239041 3327 108530167
chr3 125235427 125235448 LUN1 TRANSFAC yes 125239041 3593 71044611
chr3 125235452 125235457 SP1 TRANSFAC yes 125239041 3584 71044612
chr3 125235457 125235463 ZNF354C JASPAR yes 125239041 3578 71044613
chr3 125235466 125235479 NR2F1 JASPAR yes 125239041 3562 71044614
chr3 125235467 125235475 CREB1 JASPAR yes 125239041 3566 71044615
chr3 125235468 125235487 PAX5 JASPAR yes 125239041 3554 71044616
chr3 125235470 125235474 ESR1 TRANSFAC yes 125239041 3567 71044617
chr3 125235496 125235508 YY1 JASPAR yes 125239041 3533 71044618
chr3 125235500 125235511 CEBPB JASPAR yes 125239041 3530 71044619
chr3 125235501 125235514 NFKB1 JASPAR yes 125239041 3527 71044620
chr3 125235501 125235514 NFKB2 JASPAR yes 125239041 3527 71044621
chr3 125235517 125235532 MEF2C JASPAR yes 125239041 3509 71044622
chr3 125235518 125235533 MEF2A JASPAR yes 125239041 3508 71044623
chr3 125235519 125235531 MEF2A JASPAR yes 125239041 3510 71044624
chr3 125235519 125235531 MEF2B JASPAR yes 125239041 3510 71044625
chr3 125235519 125235531 MEF2D JASPAR yes 125239041 3510 71044626
chr3 125235538 125235547 SNAI2 JASPAR yes 125239041 3494 71044627
chr3 125235538 125235548 ID4 JASPAR yes 125239041 3493 71044628
chr3 125235540 125235549 ZEB1 JASPAR yes 125239041 3492 71044629
chr3 125235549 125235559 MAX JASPAR yes 125239041 3482 71044630
chr3 125235549 125235560 USF2 JASPAR yes 125239041 3481 71044631
chr3 125235549 125235561 HES5 JASPAR yes 125239041 3480 71044632
chr3 125235549 125235561 HES7 JASPAR yes 125239041 3480 71044633
chr3 125235561 125235576 RUNX2 JASPAR yes 125239041 3465 71044634
chr3 125235562 125235565 MYB TRANSFAC yes 125239041 3476 71044635
chr3 125235562 125235571 RUNX2 JASPAR yes 125239041 3470 71044636
chr3 125235562 125235573 RUNX1 JASPAR yes 125239041 3468 71044637
SNPs associated with SNX4[ENSG00000114520.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 124865063 rs606656 G C 300432 Esophagus 0.0386213 7002094
chr3 124326827 rs34763185 G C 838668 Pancreas 0.275034 6997976
chr3 124788560 rs78996884 C T 376935 Uterus 0.679207 7001268
chr3 124871467 rs581557 A G 294028 Lung 0.0119019 7002193
Details of SNX4[ENSG00000114520.6]
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Genomic Location chr3:125165495-125239041[-]
TSS 125239041
Gene Name SNX4
Ensembl ID ENSG00000114520.6
ENTREZID 8723
Uniprot
O95219
Protein Name
Sorting nexin-4
Expression levels of SNX4[ENSG00000114520.6]
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