EnhancerDB
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Enhancers that regulate SLAMF1[ENSG00000117090.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 160516066 160520294 enh60181 160617085 96791
Blood (OCI-LY7)
chr1 160526545 160532375 enh107415 160617085 84710
Blood (T-cell)
chr1 160530737 160530863 vista3595 160617085 86222
VISTA
chr1 160535325 160541715 enh681 160617085 75370
Thymus Blood (OCI-LY7) Blood (GM12878) Blood (Karpas-422) Blood (T-cell)
chr1 160537909 160538272 vista3596 160617085 78813
VISTA
chr1 160542785 160547455 enh682 160617085 69630
Blood (T-cell) Thymus Blood (Karpas-422)
chr1 160544770 160545265 vista3597 160617085 71820
VISTA
chr1 160546217 160546501 vista3598 160617085 70584
VISTA
chr1 160546747 160547109 vista3599 160617085 69976
VISTA
chr1 160550267 160550490 vista3600 160617085 66595
VISTA
chr1 160568524 160568531 vista3601 160617085 48554
VISTA
chr1 160573125 160577865 enh60182 160617085 39220
Blood (T-cell) Blood (OCI-LY7)
chr1 160591105 160602975 enh12318 160617085 14110
Bone Marrow (K562) Blood (T-cell) Muscle (A673) Placenta Peripheral Blood (MM.1S) Thymus Stomach
chr1 160592866 160593252 vista3602 160617085 23833
VISTA
chr1 160599558 160599933 vista3603 160617085 17152
VISTA
chr1 160605945 160611695 enh109357 160617085 5390
Stomach
chr1 160615019 160615411 vista3604 160617085 1674
VISTA
chr1 160626005 160630415 enh12319 160617085 8920
Placenta Large Intestine
chr1 160627101 160627476 vista3605 160617085 10016
VISTA
chr1 160632083 160632454 vista3606 160617085 14998
VISTA
chr1 160632325 160638202 enh12320 160617085 15240
Bone Marrow (K562) Blood (OCI-LY7) Blood (GM12878) Stomach Muscle (A673) Placenta Peripheral Blood (MM.1S) Neural Stem Cells (H9) Blood (T-cell) Heart
chr1 160639513 160648015 enh43062 160617085 22428
Blood (T-cell) Esophagus Blood (OCI-LY7) Blood (GM12878) Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus Stomach
chr1 160639828 160639998 vista3607 160617085 22743
VISTA
chr1 160641547 160642117 vista3608 160617085 24462
VISTA
chr1 160649365 160653535 enh103114 160617085 32280
Peripheral Blood (MM.1S) Blood (T-cell)
chr1 160672209 160680155 enh683 160617085 55124
Esophagus Blood (T-cell) Blood (Karpas-422)
chr1 160674845 160675222 vista3609 160617085 57760
VISTA
chr1 160677742 160679048 vista3610 160617085 60657
VISTA
chr1 160680120 160680523 vista3611 160617085 63035
VISTA
chr1 160680775 160680900 vista3612 160617085 63690
VISTA
chr1 160682568 160682866 vista3613 160617085 65483
VISTA
chr1 160684087 160684458 vista3614 160617085 67002
VISTA
chr1 160692305 160700079 enh12321 160617085 75220
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Large Intestine Ovary Esophagus Blood (GM12878) Placenta Peripheral Blood (MM.1S) Lung (PC-9) Spleen Neural Stem Cells (H9) Stomach
chr1 160696081 160696317 vista3615 160617085 78996
VISTA
chr1 160701970 160702334 vista3616 160617085 84885
VISTA
chr1 160703924 160703949 vista3617 160617085 86839
VISTA
chr1 160710126 160710934 vista3618 160617085 93041
VISTA
chr1 160710285 160716475 enh47245 160617085 93200
Thymus Blood (T-cell)
chr1 160711095 160711588 vista3619 160617085 94010
VISTA
chr1 160711781 160712159 vista3620 160617085 94696
VISTA
chr1 160712184 160712818 vista3621 160617085 95099
VISTA
chr1 160713171 160713322 vista3622 160617085 96086
VISTA
chr1 160714037 160714549 vista3623 160617085 96952
VISTA
Transcript facotrs that regulate SLAMF1[ENSG00000117090.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 160605001 160648395 ZNF274 GTRD no Blood (GM12878) 160617085 0 21344628
chr1 160605001 160648395 ZNF274 GTRD no Blood (GM12878) 160617085 0 21344629
chr1 160605001 160648395 ZNF274 GTRD no Blood (GM12878) 160617085 0 107839974
chr1 160605001 160648395 ZNF274 GTRD no Blood (GM12878) 160617085 0 107839975
chr1 160605001 160648395 ZNF274 GTRD no Blood (GM12878) 160617085 0 107839976
chr1 160605001 160648395 ZNF274 GTRD no Blood (GM12878) 160617085 0 107839977
chr1 160605001 160648395 ZNF274 GTRD no Blood (GM12878) 160617085 0 107839978
chr1 160610106 160617290 POLR2A UCSC Txn Factor no Conserved 160617085 205 107839979
chr1 160613482 160617290 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160617085 205 107839980
chr1 160614572 160615260 ZNF274 GTRD no Bone Marrow (K562) 160617085 1825 107839981
chr1 160614710 160615210 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160617085 1875 107839982
chr1 160615025 160615043 TP53 JASPAR yes 160617085 2042 118384583
chr1 160615027 160615042 TP53 JASPAR yes 160617085 2043 118384584
chr1 160615034 160615038 LFA1 TRANSFAC yes 160617085 2047 118384585
chr1 160615035 160615445 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160617085 1640 107839983
chr1 160615036 160615600 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160617085 1485 107839984
chr1 160615042 160615046 NFE TRANSFAC yes 160617085 2039 118384586
chr1 160615046 160615057 FOS JASPAR yes 160617085 2028 118384587
chr1 160615052 160615055 MYB TRANSFAC yes 160617085 2030 118384588
chr1 160615056 160615062 NFE2 TRANSFAC yes 160617085 2023 118384589
chr1 160615062 160615066 YY1 TRANSFAC yes 160617085 2019 118384590
chr1 160615066 160615072 TCF4 TRANSFAC yes 160617085 2013 118384591
chr1 160615073 160615077 YY1 TRANSFAC yes 160617085 2008 118384592
chr1 160615078 160615082 NFE TRANSFAC yes 160617085 2003 118384593
chr1 160615081 160615461 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160617085 1624 107839985
chr1 160615086 160615096 HOXA13 JASPAR yes 160617085 1989 118384594
chr1 160615086 160615096 HOXB13 JASPAR yes 160617085 1989 118384595
chr1 160615086 160615096 HOXD13 JASPAR yes 160617085 1989 118384596
chr1 160615086 160615097 HOXA10 JASPAR yes 160617085 1988 118384597
chr1 160615087 160615096 CDX1 JASPAR yes 160617085 1989 118384598
chr1 160615094 160615104 NFKB1 JASPAR yes 160617085 1981 118384599
chr1 160615098 160615118 TBX19 JASPAR yes 160617085 1967 118384600
chr1 160615100 160615116 T JASPAR yes 160617085 1969 118384601
chr1 160615111 160615122 FOXH1 JASPAR yes 160617085 1963 118384602
chr1 160615113 160615613 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160617085 1472 107839986
chr1 160615115 160615119 YY1 TRANSFAC yes 160617085 1966 118384603
chr1 160615115 160615130 MEF2C JASPAR yes 160617085 1955 118384604
chr1 160615116 160615131 MEF2A JASPAR yes 160617085 1954 118384605
chr1 160615117 160615129 MEF2A JASPAR yes 160617085 1956 118384606
chr1 160615117 160615129 MEF2B JASPAR yes 160617085 1956 118384607
chr1 160615117 160615129 MEF2D JASPAR yes 160617085 1956 118384608
chr1 160615118 160615128 MEF2A JASPAR yes 160617085 1957 118384609
chr1 160615119 160615134 FOXP1 JASPAR yes 160617085 1951 118384610
chr1 160615120 160615132 IRF1 JASPAR yes 160617085 1953 118384611
chr1 160615121 160615136 FOXP1 JASPAR yes 160617085 1949 118384612
chr1 160615129 160615145 SOX4 JASPAR yes 160617085 1940 118384613
chr1 160615129 160615145 SOX8 JASPAR yes 160617085 1940 118384614
chr1 160615129 160615529 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160617085 1556 107839987
chr1 160615153 160615159 TCF1 TRANSFAC yes 160617085 1926 118384615
chr1 160615183 160615201 NFYA JASPAR yes 160617085 1884 118384616
chr1 160615186 160615202 NFYA JASPAR yes 160617085 1883 118384617
chr1 160615189 160615204 NFYB JASPAR yes 160617085 1881 118384618
chr1 160615191 160615196 NFY TRANSFAC yes 160617085 1889 118384619
chr1 160615195 160615200 GATA2 JASPAR yes 160617085 1885 118384620
chr1 160615204 160615640 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160617085 1445 107839988
chr1 160615212 160615222 SP1 JASPAR yes 160617085 1863 118384621
chr1 160615271 160615275 ESR1 TRANSFAC yes 160617085 1810 118384622
chr1 160615272 160615283 NRL JASPAR yes 160617085 1802 118384623
chr1 160615295 160615315 ESR1 JASPAR yes 160617085 1770 118384624
chr1 160615318 160615333 TP53 JASPAR yes 160617085 1752 118384625
chr1 160615331 160615338 NFATC2 JASPAR yes 160617085 1747 118384626
chr1 160615332 160615343 NFKB1 JASPAR yes 160617085 1742 118384627
chr1 160615340 160615355 HNF4G JASPAR yes 160617085 1730 118384628
chr1 160615341 160615355 RXRB JASPAR yes 160617085 1730 118384629
chr1 160615341 160615355 RXRG JASPAR yes 160617085 1730 118384630
chr1 160615341 160615356 HNF4A JASPAR yes 160617085 1729 118384631
chr1 160615353 160615753 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160617085 1332 107839989
chr1 160615360 160615370 SREBF1 JASPAR yes 160617085 1715 118384632
chr1 160615360 160615370 SREBF2 JASPAR yes 160617085 1715 118384633
chr1 160615365 160615378 EOMES JASPAR yes 160617085 1707 118384634
chr1 160615367 160615377 TBR1 JASPAR yes 160617085 1708 118384635
chr1 160615367 160615378 TBX20 JASPAR yes 160617085 1707 118384636
chr1 160615367 160615378 TBX2 JASPAR yes 160617085 1707 118384637
chr1 160615368 160615378 TBX21 JASPAR yes 160617085 1707 118384638
chr1 160615369 160615377 MGA JASPAR yes 160617085 1708 118384639
chr1 160615369 160615377 TBX15 JASPAR yes 160617085 1708 118384640
chr1 160615369 160615377 TBX1 JASPAR yes 160617085 1708 118384641
chr1 160615369 160615377 TBX4 JASPAR yes 160617085 1708 118384642
chr1 160615369 160615377 TBX5 JASPAR yes 160617085 1708 118384643
chr1 160615399 160615405 HiNF-A TRANSFAC yes 160617085 1680 118384644
chr1 160617988 160649703 ZNF274 GTRD no Blood (GM12878) 160617085 903 21344630
chr1 160617988 160649703 ZNF274 GTRD no Blood (GM12878) 160617085 903 21344631
chr1 160617988 160649703 ZNF274 GTRD no Blood (GM12878) 160617085 903 107839990
chr1 160617988 160649703 ZNF274 GTRD no Blood (GM12878) 160617085 903 107839991
chr1 160617988 160649703 ZNF274 GTRD no Blood (GM12878) 160617085 903 107839992
chr1 160617988 160649703 ZNF274 GTRD no Blood (GM12878) 160617085 903 107839993
chr1 160617999 160648524 ZNF274 GTRD no Blood (GM12878) 160617085 914 21344632
chr1 160617999 160648524 ZNF274 GTRD no Blood (GM12878) 160617085 914 21344633
chr1 160617999 160648524 ZNF274 GTRD no Blood (GM12878) 160617085 914 107839994
chr1 160617999 160648524 ZNF274 GTRD no Blood (GM12878) 160617085 914 107839995
chr1 160617999 160648524 ZNF274 GTRD no Blood (GM12878) 160617085 914 107839996
chr1 160617999 160648524 ZNF274 GTRD no Blood (GM12878) 160617085 914 107839997
chr1 160618035 160640295 ZNF274 GTRD no Blood (GM12878) 160617085 950 21344634
chr1 160618035 160640295 ZNF274 GTRD no Blood (GM12878) 160617085 950 21344635
chr1 160618035 160640295 ZNF274 GTRD no Blood (GM12878) 160617085 950 107839998
chr1 160618035 160640295 ZNF274 GTRD no Blood (GM12878) 160617085 950 107839999
chr1 160618035 160640295 ZNF274 GTRD no Blood (GM12878) 160617085 950 107840000
chr1 160618037 160635736 ZNF274 GTRD no Blood (GM12878) 160617085 952 21344636
chr1 160618037 160635736 ZNF274 GTRD no Blood (GM12878) 160617085 952 107840001
chr1 160618037 160635736 ZNF274 GTRD no Blood (GM12878) 160617085 952 107840002
chr1 160618087 160649194 ZNF274 GTRD no Blood (GM12878) 160617085 1002 21344637
chr1 160618087 160649194 ZNF274 GTRD no Blood (GM12878) 160617085 1002 21344638
chr1 160618087 160649194 ZNF274 GTRD no Blood (GM12878) 160617085 1002 107840003
chr1 160618087 160649194 ZNF274 GTRD no Blood (GM12878) 160617085 1002 107840004
chr1 160618087 160649194 ZNF274 GTRD no Blood (GM12878) 160617085 1002 107840005
chr1 160618087 160649194 ZNF274 GTRD no Blood (GM12878) 160617085 1002 107840006
chr1 160618197 160628508 ZNF274 GTRD no Blood (GM12878) 160617085 1112 107840007
chr1 160620576 160629206 ZNF274 GTRD no Blood (GM12878) 160617085 3491 107840008
chr1 160620590 160640294 ZNF274 GTRD no Blood (GM12878) 160617085 3505 21344639
chr1 160620590 160640294 ZNF274 GTRD no Blood (GM12878) 160617085 3505 21344640
chr1 160620590 160640294 ZNF274 GTRD no Blood (GM12878) 160617085 3505 107840009
chr1 160620590 160640294 ZNF274 GTRD no Blood (GM12878) 160617085 3505 107840010
chr1 160620590 160640294 ZNF274 GTRD no Blood (GM12878) 160617085 3505 107840011
chr1 160620656 160639495 ZNF274 GTRD no Blood (GM12878) 160617085 3571 21344641
chr1 160620656 160639495 ZNF274 GTRD no Blood (GM12878) 160617085 3571 107840012
chr1 160620656 160639495 ZNF274 GTRD no Blood (GM12878) 160617085 3571 107840013
SNPs associated with SLAMF1[ENSG00000117090.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 160640612 rs61302958 T A 23527 Esophagus 0.184626 667173
chr1 160567666 rs6689876 C T 10224 Esophagus 0.147681 666314
chr1 160622414 rs11265458 G A,C 5329 Heart 0.232985 666924
chr1 159820172 rs66922699 C A 757718 Heart 0.250257 662219
chr1 160096530 rs190663295 G C 481360 Pancreas 0.373519 664032
chr1 160736598 rs492484 T C 119513 Breast 0.34242 668100
chr1 159815940 rs2501353 G T 761950 Spleen 0.214267 662149
chr1 160634341 rs7531679 T C,G 17256 Ovary 0.158278 667079
chr1 161582571 rs114835251 G C 965486 Uterus 0.230349 672502
chr1 160625851 rs11583732 A G 8766 Lung 0.101085 666976
chr1 160431614 rs78758474 T C 146276 Adrenal 0.404696 665253
Details of SLAMF1[ENSG00000117090.10]
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Genomic Location chr1:160577890-160617085[-]
TSS 160617085
Gene Name SLAMF1
Ensembl ID ENSG00000117090.10
ENTREZID 6504
Uniprot
Q13291
Protein Name
SLAMF1 protein
Signaling lymphocytic activation molecule
Expression levels of SLAMF1[ENSG00000117090.10]
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