EnhancerDB
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  3. DDX39A[ENSG00000123136.10]
Enhancers that regulate DDX39A[ENSG00000123136.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 14442465 14450658 enh86305 14530192 79534
Colon (HCT116) Blood (T-cell) Prostate (RWPE1)
chr19 14452585 14456913 enh89930 14530192 73279
Cervix (HeLa-S3) Prostate (RWPE1)
chr19 14457365 14469352 enh48170 14530192 60840
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Blood (T-cell) Blood (OCI-LY7) Blood (GM12878) Colon (HCT116) Thymus
chr19 14466734 14466953 vista28746 14530192 63239
VISTA
chr19 14467223 14467368 vista28747 14530192 62824
VISTA
chr19 14470665 14486095 enh5020 14530192 44097
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Muscle (Myotube) Prostate (RWPE1) Muscle (A673)
chr19 14473667 14474081 vista28748 14530192 56111
VISTA
chr19 14474119 14474280 vista28749 14530192 55912
VISTA
chr19 14478980 14479307 vista28750 14530192 50885
VISTA
chr19 14480472 14481175 vista28751 14530192 49017
VISTA
chr19 14485924 14486626 vista28752 14530192 43566
VISTA
chr19 14490885 14497615 enh17935 14530192 32577
Skin (Keratinocyte) Cervix (HeLa-S3) Large Intestine Astrocyte Bone (Osteoblast) Placenta Lung (PC-9) Uterus
chr19 14493470 14493891 vista28753 14530192 36301
VISTA
chr19 14499980 14500202 vista28754 14530192 29990
VISTA
chr19 14502765 14506915 enh107757 14530192 23277
Blood (T-cell)
chr19 14514465 14524650 enh5021 14530192 5542
Uterus Blood (T-cell) Blood (Karpas-422) Stomach
chr19 14528800 14529217 vista28755 14530192 975
VISTA
chr19 14545712 14545849 vista28756 14530192 15520
VISTA
chr19 14545997 14546246 vista28757 14530192 15805
VISTA
chr19 14546445 14550595 enh17936 14530192 16253
Placenta
chr19 14562932 14567028 enh86306 14530192 32740
Colon (HCT116)
chr19 14570486 14570855 vista28758 14530192 40294
VISTA
chr19 14576577 14576952 vista28759 14530192 46385
VISTA
chr19 14580325 14584475 enh109828 14530192 50133
Stomach
chr19 14595191 14599489 enh86307 14530192 64999
Colon (HCT116)
chr19 14597679 14597949 vista28760 14530192 67487
VISTA
chr19 14611085 14622595 enh17937 14530192 80893
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Peripheral Blood (MM.1S) Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Epithelial (MCF-7)
chr19 14616908 14617174 vista28761 14530192 86716
VISTA
chr19 14617819 14618098 vista28762 14530192 87627
VISTA
chr19 14629265 14636135 enh17938 14530192 99073
Liver (HepG2) Brain (SK-N-MC) Esophagus Blood (OCI-LY7) Placenta Colon (HCT116) Blood (T-cell)
Transcript facotrs that regulate DDX39A[ENSG00000123136.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 14527449 14528981 ZNF274 GTRD no Bone Marrow (K562) 14530192 1211 108391548
chr19 14528249 14530349 TCF7L2 GTRD no Colon (HCT116) 14530192 157 108391549
chr19 14528262 14530285 TCF7L2 GTRD no Colon (HCT116) 14530192 93 108391550
chr19 14528290 14530334 TCF7L2 GTRD no Colon (HCT116) 14530192 142 108391551
chr19 14528314 14529400 ZNF274 GTRD no Bone Marrow (K562) 14530192 792 108391552
chr19 14528337 14530152 TCF7L2 GTRD no Colon (HCT116) 14530192 40 108391553
chr19 14528341 14530412 ZNF274 GTRD no Bone Marrow (K562) 14530192 220 108391554
chr19 14528358 14529303 ZNF274 GTRD no Blood (GM12878) 14530192 889 108391555
chr19 14528359 14530300 TCF7L2 GTRD no Colon (HCT116) 14530192 108 108391556
chr19 14528373 14530892 ZNF274 GTRD no Blood (GM12878) 14530192 700 108391557
chr19 14528387 14530433 ZNF274 GTRD no Bone Marrow (K562) 14530192 241 108391558
chr19 14528388 14530874 ZNF274 GTRD no Bone Marrow (K562) 14530192 682 108391559
chr19 14528412 14531080 ZNF274 GTRD no Bone Marrow (K562) 14530192 888 108391560
chr19 14528456 14530346 TCF7L2 GTRD no Colon (HCT116) 14530192 154 108391561
chr19 14528463 14530510 TEF1 GTRD no Bone (Osteoblast) 14530192 318 108391562
chr19 14528471 14530516 ZNF143 GTRD no Epithelial (MCF-7) 14530192 324 108391563
chr19 14528505 14530538 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 346 108391564
chr19 14528517 14530309 ZNF274 GTRD no Blood (GM12878) 14530192 117 108391565
chr19 14528543 14530455 TCF7L2 GTRD no Colon (HCT116) 14530192 263 108391566
chr19 14528588 14529128 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 14530192 1064 108391567
chr19 14528626 14530500 ZNF143 GTRD no Epithelial (MCF-7) 14530192 308 108391568
chr19 14528629 14530226 ZBTB33 GTRD no Lung (A549) 14530192 34 108391569
chr19 14528646 14530355 ZNF143 GTRD no Epithelial (MCF-7) 14530192 163 108391570
chr19 14528647 14529567 ZBTB33 GTRD no Lung (A549) 14530192 625 108391571
chr19 14528653 14530411 ZNF274 GTRD no Bone Marrow (K562) 14530192 219 108391572
chr19 14528664 14530466 ZNF274 GTRD no Bone Marrow (K562) 14530192 274 108391573
chr19 14528686 14530372 ZNF274 GTRD no Bone Marrow (K562) 14530192 180 108391574
chr19 14528696 14529012 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 14530192 1180 108391575
chr19 14528702 14529012 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 1180 108391576
chr19 14528702 14530419 ZNF143 GTRD no Epithelial (MCF-7) 14530192 227 108391577
chr19 14528712 14528988 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 14530192 1204 108391578
chr19 14528718 14528980 ZBTB33 GTRD no Lung (A549) 14530192 1212 108391579
chr19 14528718 14530524 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 332 108391580
chr19 14528724 14530005 TCF7L2 GTRD no Colon (HCT116) 14530192 187 108391581
chr19 14528729 14530082 ZBTB33 GTRD no Lung (A549) 14530192 110 108391582
chr19 14528730 14531087 ZNF274 GTRD no Blood (GM12878) 14530192 895 108391583
chr19 14528739 14530365 ZNF143 GTRD no Epithelial (MCF-7) 14530192 173 108391584
chr19 14528742 14529201 ZNF274 GTRD no Blood (GM12878) 14530192 991 108391585
chr19 14528743 14529776 ZNF274 GTRD no Liver (HepG2) 14530192 416 108391586
chr19 14528744 14530090 ZNF274 GTRD no Bone Marrow (K562) 14530192 102 108391587
chr19 14528749 14530347 ZNF274 GTRD no Liver (HepG2) 14530192 155 108391588
chr19 14528749 14530565 ZNF274 GTRD no Bone Marrow (K562) 14530192 373 108391589
chr19 14528750 14528976 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 1216 108391590
chr19 14528752 14528996 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 1196 108391591
chr19 14528753 14530378 ZNF274 GTRD no Bone Marrow (K562) 14530192 186 108391592
chr19 14528760 14530386 ZNF274 GTRD no Bone Marrow (K562) 14530192 194 108391593
chr19 14528765 14530863 ZNF274 GTRD no Blood (GM12878) 14530192 671 108391594
chr19 14528774 14529227 ZNF143 GTRD no Epithelial (MCF-7) 14530192 965 108391595
chr19 14528777 14530244 ZNF274 GTRD no Blood (GM12878) 14530192 52 108391596
chr19 14528785 14530444 ZNF274 GTRD no Blood (GM12878) 14530192 252 108391597
chr19 14528790 14530421 ZNF274 GTRD no Liver (HepG2) 14530192 229 108391598
chr19 14528796 14530342 ZNF143 GTRD no Epithelial (MCF-7) 14530192 150 108391599
chr19 14528797 14530175 ZNF274 GTRD no Blood (GM12878) 14530192 17 108391600
chr19 14528797 14530427 ZNF274 GTRD no Bone Marrow (K562) 14530192 235 108391601
chr19 14528800 14530293 ZNF143 GTRD no Epithelial (MCF-7) 14530192 101 108391602
chr19 14528802 14530427 ZNF274 GTRD no Liver (HepG2) 14530192 235 108391603
chr19 14528806 14530332 ZNF274 GTRD no Bone Marrow (K562) 14530192 140 108391604
chr19 14528806 14531001 ZNF274 GTRD no Blood (GM12878) 14530192 809 108391605
chr19 14528815 14530178 ZBTB33 GTRD no Lung (A549) 14530192 14 108391606
chr19 14528816 14528828 FOXI1 JASPAR yes 14530192 1364 70813048
chr19 14528818 14529319 ZNF274 GTRD no Bone Marrow (K562) 14530192 873 108391607
chr19 14528820 14530358 ZNF274 GTRD no Blood (GM12878) 14530192 166 108391608
chr19 14528821 14530515 ZNF143 GTRD no Epithelial (MCF-7) 14530192 323 108391609
chr19 14528829 14530209 ZNF274 GTRD no Bone Marrow (K562) 14530192 17 108391610
chr19 14528832 14528844 ELF1 JASPAR yes 14530192 1348 70813049
chr19 14528832 14528845 ELF3 JASPAR yes 14530192 1347 70813050
chr19 14528833 14528844 SPDEF JASPAR yes 14530192 1348 70813051
chr19 14528833 14529409 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 783 108391611
chr19 14528834 14528843 ELK4 JASPAR yes 14530192 1349 70813052
chr19 14528834 14528844 ELK1 JASPAR yes 14530192 1348 70813053
chr19 14528834 14528844 ELK3 JASPAR yes 14530192 1348 70813054
chr19 14528834 14528844 ERF JASPAR yes 14530192 1348 70813055
chr19 14528834 14528844 ERG JASPAR yes 14530192 1348 70813056
chr19 14528834 14528844 ETS1 JASPAR yes 14530192 1348 70813057
chr19 14528834 14528844 ETV1 JASPAR yes 14530192 1348 70813058
chr19 14528834 14528844 ETV3 JASPAR yes 14530192 1348 70813059
chr19 14528834 14528844 ETV4 JASPAR yes 14530192 1348 70813060
chr19 14528834 14528844 ETV5 JASPAR yes 14530192 1348 70813061
chr19 14528834 14528844 FEV JASPAR yes 14530192 1348 70813062
chr19 14528834 14528844 FLI1 JASPAR yes 14530192 1348 70813063
chr19 14528834 14530314 ZNF143 GTRD no Epithelial (MCF-7) 14530192 122 108391612
chr19 14528843 14529385 ZNF274 GTRD no Blood (GM12878) 14530192 807 108391613
chr19 14528848 14529352 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 14530192 840 108391614
chr19 14528848 14530298 ZNF274 GTRD no Blood (GM12878) 14530192 106 108391615
chr19 14528849 14529289 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 903 108391616
chr19 14528850 14529142 ZNF274 GTRD no Blood (GM12878) 14530192 1050 108391617
chr19 14528851 14528864 ELF1 JASPAR yes 14530192 1328 70813064
chr19 14528852 14528862 ELK1 JASPAR yes 14530192 1330 70813065
chr19 14528852 14528864 EHF JASPAR yes 14530192 1328 70813066
chr19 14528852 14528864 ELF1 JASPAR yes 14530192 1328 70813067
chr19 14528852 14528864 ELF4 JASPAR yes 14530192 1328 70813068
chr19 14528852 14528865 ELF3 JASPAR yes 14530192 1327 70813069
chr19 14528852 14529370 E2F1 UCSC Txn Factor no Conserved 14530192 822 108391618
chr19 14528852 14529370 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 14530192 822 108391619
chr19 14528852 14530411 ZNF274 GTRD no Bone Marrow (K562) 14530192 219 108391620
chr19 14528853 14528864 ELF5 JASPAR yes 14530192 1328 70813070
chr19 14528853 14530340 ZNF143 GTRD no Epithelial (MCF-7) 14530192 148 108391621
chr19 14528854 14528864 GABPA JASPAR yes 14530192 1328 70813071
chr19 14528854 14528865 ELK4 JASPAR yes 14530192 1327 70813072
chr19 14528856 14528862 ETS1 JASPAR yes 14530192 1330 70813073
chr19 14528856 14528862 SPI1 JASPAR yes 14530192 1330 70813074
chr19 14528858 14529913 ZBTB33 GTRD no Brain (SK-N-SH) 14530192 279 108391622
chr19 14528862 14530802 TCF7L2 GTRD no Colon (HCT116) 14530192 610 108391623
chr19 14528863 14529399 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 793 108391624
chr19 14528863 14530496 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 304 108391625
chr19 14528863 14530560 ZNF274 GTRD no Liver (HepG2) 14530192 368 108391626
chr19 14528863 14531128 ZNF274 GTRD no Bone Marrow (K562) 14530192 936 108391627
chr19 14528864 14529268 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 924 108391628
chr19 14528871 14529943 ZBTB33 GTRD no Brain (SK-N-SH) 14530192 249 108391629
chr19 14528874 14530435 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 243 108391630
chr19 14528875 14530073 ZNF274 GTRD no Bone Marrow (K562) 14530192 119 108391631
chr19 14528875 14530224 ZNF143 GTRD no Epithelial (MCF-7) 14530192 32 108391632
chr19 14528882 14528888 GATA3 JASPAR yes 14530192 1304 70813075
chr19 14528884 14529268 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 924 108391633
chr19 14528886 14529286 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 906 108391634
chr19 14528888 14529192 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 1000 108391635
chr19 14528892 14529348 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 14530192 844 108391636
chr19 14528892 14529492 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 700 108391637
chr19 14528896 14529272 YY1 UCSC Txn Factor no Conserved 14530192 920 108391638
chr19 14528896 14529272 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 14530192 920 108391639
chr19 14528898 14529362 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 14530192 830 108391640
chr19 14528900 14529390 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 802 108391641
chr19 14528900 14529424 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 768 108391642
chr19 14528900 14530360 ZNF274 GTRD no Bone Marrow (K562) 14530192 168 108391643
chr19 14528901 14530271 ZNF274 GTRD no Bone Marrow (K562) 14530192 79 108391644
chr19 14528903 14530444 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 252 108391645
chr19 14528904 14529424 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 14530192 768 108391646
chr19 14528905 14528924 PAX5 JASPAR yes 14530192 1268 70813076
chr19 14528905 14530125 ZNF274 GTRD no Bone Marrow (K562) 14530192 67 108391647
chr19 14528912 14530076 ZBTB33 GTRD no Lung (A549) 14530192 116 108391648
chr19 14528920 14529284 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 908 108391649
chr19 14528920 14530278 ZNF143 GTRD no Epithelial (MCF-7) 14530192 86 108391650
chr19 14528920 14530348 ZNF274 GTRD no Bone Marrow (K562) 14530192 156 108391651
chr19 14528921 14529899 ZNF274 GTRD no Bone Marrow (K562) 14530192 293 108391652
chr19 14528921 14530355 ZNF274 GTRD no Blood (GM12878) 14530192 163 108391653
chr19 14528922 14530415 ZBTB33 GTRD no Lung (A549) 14530192 223 108391654
chr19 14528925 14528929 NFE TRANSFAC yes 14530192 1263 70813077
chr19 14528927 14530087 ZNF274 GTRD no Bone Marrow (K562) 14530192 105 108391655
chr19 14528927 14530089 ZNF274 GTRD no Bone Marrow (K562) 14530192 103 108391656
chr19 14528928 14529184 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 1008 108391657
chr19 14528929 14528944 FOXP1 JASPAR yes 14530192 1248 70813078
chr19 14528930 14528945 FOXP1 JASPAR yes 14530192 1247 70813079
chr19 14528931 14528946 FOXP1 JASPAR yes 14530192 1246 70813080
chr19 14528931 14528952 IRF1 JASPAR yes 14530192 1240 70813081
chr19 14528931 14530373 ZNF143 GTRD no Epithelial (MCF-7) 14530192 181 108391658
chr19 14528932 14528947 FOXP1 JASPAR yes 14530192 1245 70813082
chr19 14528932 14528953 IRF1 JASPAR yes 14530192 1239 70813083
chr19 14528932 14530354 ZNF143 GTRD no Epithelial (MCF-7) 14530192 162 108391659
chr19 14528933 14528948 FOXP1 JASPAR yes 14530192 1244 70813084
chr19 14528933 14528954 IRF1 JASPAR yes 14530192 1238 70813085
chr19 14528934 14528949 FOXP1 JASPAR yes 14530192 1243 70813086
chr19 14528934 14528955 IRF1 JASPAR yes 14530192 1237 70813087
chr19 14528935 14528950 FOXP1 JASPAR yes 14530192 1242 70813088
chr19 14528935 14528956 IRF1 JASPAR yes 14530192 1236 70813089
chr19 14528936 14528951 FOXP1 JASPAR yes 14530192 1241 70813090
chr19 14528936 14528957 IRF1 JASPAR yes 14530192 1235 70813091
chr19 14528936 14529272 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 920 108391660
chr19 14528937 14528952 FOXP1 JASPAR yes 14530192 1240 70813092
chr19 14528937 14528958 IRF1 JASPAR yes 14530192 1234 70813093
chr19 14528937 14530065 ZNF143 GTRD no Epithelial (MCF-7) 14530192 127 108391661
chr19 14528937 14530146 ZNF274 GTRD no Liver (HepG2) 14530192 46 108391662
chr19 14528938 14528953 FOXP1 JASPAR yes 14530192 1239 70813094
chr19 14528938 14528959 IRF1 JASPAR yes 14530192 1233 70813095
chr19 14528938 14529328 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 864 108391663
chr19 14528938 14529896 ZNF274 GTRD no Liver (HepG2) 14530192 296 108391664
chr19 14528939 14528954 FOXP1 JASPAR yes 14530192 1238 70813096
chr19 14528939 14528960 IRF1 JASPAR yes 14530192 1232 70813097
chr19 14528939 14529449 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 743 108391665
chr19 14528940 14528955 FOXP1 JASPAR yes 14530192 1237 70813098
chr19 14528940 14528961 IRF1 JASPAR yes 14530192 1231 70813099
chr19 14528940 14529344 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 848 108391666
chr19 14528941 14528956 FOXP1 JASPAR yes 14530192 1236 70813100
chr19 14528941 14528962 IRF1 JASPAR yes 14530192 1230 70813101
chr19 14528941 14529381 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 14530192 811 108391667
chr19 14528942 14528957 FOXP1 JASPAR yes 14530192 1235 70813102
chr19 14528942 14528963 IRF1 JASPAR yes 14530192 1229 70813103
chr19 14528943 14528958 FOXP1 JASPAR yes 14530192 1234 70813104
chr19 14528944 14528965 IRF1 JASPAR yes 14530192 1227 70813105
chr19 14528944 14529244 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 14530192 948 108391668
chr19 14528944 14529300 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 14530192 892 108391669
chr19 14528945 14528960 FOXP1 JASPAR yes 14530192 1232 70813106
chr19 14528945 14530328 ZNF274 GTRD no Liver (HepG2) 14530192 136 108391670
chr19 14528946 14528961 STAT2 JASPAR yes 14530192 1231 70813107
chr19 14528946 14528967 IRF1 JASPAR yes 14530192 1225 70813108
chr19 14528946 14530411 ZNF274 GTRD no Liver (HepG2) 14530192 219 108391671
chr19 14528947 14528962 FOXP1 JASPAR yes 14530192 1230 70813109
chr19 14528948 14528969 IRF1 JASPAR yes 14530192 1223 70813110
chr19 14528949 14529385 MAX UCSC Txn Factor no Conserved 14530192 807 108391672
chr19 14528949 14529385 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 807 108391673
chr19 14528952 14528967 PRDM1 JASPAR yes 14530192 1225 70813111
chr19 14528952 14528973 IRF1 JASPAR yes 14530192 1219 70813112
chr19 14528952 14530049 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 143 108391674
chr19 14528954 14529390 MXI1 UCSC Txn Factor no Conserved 14530192 802 108391675
chr19 14528954 14529390 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 802 108391676
chr19 14528954 14530106 TCF7L2 GTRD no Colon (HCT116) 14530192 86 108391677
chr19 14528955 14529331 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 14530192 861 108391678
chr19 14528957 14530549 ZNF274 GTRD no Bone Marrow (K562) 14530192 357 108391679
chr19 14528959 14529329 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 863 108391680
chr19 14528961 14529872 ZNF274 GTRD no Blood (GM12878) 14530192 320 108391681
chr19 14528963 14528977 FOXF2 JASPAR yes 14530192 1215 70813113
chr19 14528964 14529284 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 908 108391682
chr19 14528966 14529330 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 862 108391683
chr19 14528966 14529978 ZNF274 GTRD no Blood (GM12878) 14530192 214 108391684
chr19 14528967 14529366 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 826 108391685
chr19 14528969 14528980 PROP1 JASPAR yes 14530192 1212 70813114
chr19 14528969 14529213 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 979 108391686
chr19 14528970 14529280 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 912 108391687
chr19 14528970 14530031 ZNF274 GTRD no Bone Marrow (K562) 14530192 161 108391688
chr19 14528976 14529694 ZNF143 GTRD no Epithelial (MCF-7) 14530192 498 108391689
chr19 14528977 14530372 ZNF274 GTRD no Blood (GM12878) 14530192 180 108391690
chr19 14528978 14529322 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 14530192 870 108391691
chr19 14528978 14529546 ZNF274 GTRD no Blood (GM12878) 14530192 646 108391692
chr19 14528983 14529239 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 953 108391693
chr19 14528983 14529240 E2F6 UCSC Txn Factor no Conserved 14530192 952 108391694
chr19 14528985 14529295 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 14530192 897 108391695
chr19 14528987 14530235 ZNF274 GTRD no Liver (HepG2) 14530192 43 108391696
chr19 14528988 14529492 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 700 108391697
chr19 14528989 14529313 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 14530192 879 108391698
chr19 14528989 14529339 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 14530192 853 108391699
chr19 14528993 14529471 ZNF274 GTRD no Blood (GM12878) 14530192 721 108391700
chr19 14528993 14529965 ZBTB33 GTRD no Brain (SK-N-SH) 14530192 227 108391701
chr19 14528993 14530314 ZNF274 GTRD no Liver (HepG2) 14530192 122 108391702
chr19 14528997 14529011 GATA2 JASPAR yes 14530192 1181 70813115
chr19 14528997 14529225 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 14530192 967 108391703
chr19 14528997 14530222 ZBTB33 GTRD no Lung (A549) 14530192 30 108391704
chr19 14528999 14529007 GATA3 JASPAR yes 14530192 1185 70813116
chr19 14529001 14530135 ZNF274 GTRD no Blood (GM12878) 14530192 57 108391705
chr19 14529003 14529018 HSF1 JASPAR yes 14530192 1174 70813117
chr19 14529003 14529347 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 845 108391706
chr19 14529003 14530373 ZNF274 GTRD no Bone Marrow (K562) 14530192 181 108391707
chr19 14529004 14529017 HSF1 JASPAR yes 14530192 1175 70813118
chr19 14529004 14529017 HSF2 JASPAR yes 14530192 1175 70813119
chr19 14529004 14529017 HSF4 JASPAR yes 14530192 1175 70813120
chr19 14529008 14529238 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 954 108391708
chr19 14529008 14530111 ZNF274 GTRD no Blood (GM12878) 14530192 81 108391709
chr19 14529009 14529179 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 1013 108391710
chr19 14529009 14530389 ZNF274 GTRD no Blood (GM12878) 14530192 197 108391711
chr19 14529010 14530172 ZBTB33 GTRD no Lung (A549) 14530192 20 108391712
chr19 14529012 14529187 ZNF274 GTRD no Liver (HepG2) 14530192 1005 108391713
chr19 14529012 14529926 ZNF274 GTRD no Liver (HepG2) 14530192 266 108391714
chr19 14529015 14529351 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 14530192 841 108391715
chr19 14529016 14530276 ZBTB33 GTRD no Lung (A549) 14530192 84 108391716
chr19 14529019 14529187 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 1005 108391717
chr19 14529020 14530283 ZBTB33 GTRD no Brain (SK-N-SH) 14530192 91 108391718
chr19 14529022 14530116 ZNF143 GTRD no Epithelial (MCF-7) 14530192 76 108391719
chr19 14529025 14529731 ZNF274 GTRD no Liver (HepG2) 14530192 461 108391720
chr19 14529025 14529922 ZNF274 GTRD no Bone Marrow (K562) 14530192 270 108391721
chr19 14529025 14530469 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 277 108391722
chr19 14529026 14530473 ZNF274 GTRD no Liver (HepG2) 14530192 281 108391723
chr19 14529027 14530300 ZNF274 GTRD no Bone Marrow (K562) 14530192 108 108391724
chr19 14529027 14530363 ZNF143 GTRD no Epithelial (MCF-7) 14530192 171 108391725
chr19 14529027 14530450 ZNF274 GTRD no Liver (HepG2) 14530192 258 108391726
chr19 14529029 14529840 TCF7L2 GTRD no Colon (HCT116) 14530192 352 108391727
chr19 14529029 14530397 ZNF274 GTRD no Liver (HepG2) 14530192 205 108391728
chr19 14529031 14529289 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 14530192 903 108391729
chr19 14529036 14529440 ZBTB33 GTRD no Lung (A549) 14530192 752 108391730
chr19 14529036 14530272 ZNF143 GTRD no Epithelial (MCF-7) 14530192 80 108391731
chr19 14529037 14530040 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 152 108391732
chr19 14529037 14530323 ZBTB33 GTRD no Lung (A549) 14530192 131 108391733
chr19 14529039 14529175 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 14530192 1017 108391734
chr19 14529041 14530346 ZNF274 GTRD no Blood (GM12878) 14530192 154 108391735
chr19 14529044 14529054 PAX3 JASPAR yes 14530192 1138 70813121
chr19 14529046 14529055 VENTX JASPAR yes 14530192 1137 70813122
chr19 14529047 14529060 DUXA JASPAR yes 14530192 1132 70813123
chr19 14529048 14529059 DUX4 JASPAR yes 14530192 1133 70813124
chr19 14529048 14529059 PHOX2A JASPAR yes 14530192 1133 70813125
chr19 14529050 14529243 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 14530192 949 108391736
chr19 14529051 14530376 ZNF274 GTRD no Liver (HepG2) 14530192 184 108391737
chr19 14529054 14529391 ZNF274 GTRD no Blood (GM12878) 14530192 801 108391738
chr19 14529054 14530055 ZNF274 GTRD no Blood (GM12878) 14530192 137 108391739
chr19 14529059 14530400 ZNF274 GTRD no Liver (HepG2) 14530192 208 108391740
chr19 14529060 14529538 ZNF274 GTRD no Blood (GM12878) 14530192 654 108391741
chr19 14529060 14530026 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 166 108391742
chr19 14529061 14530075 ZNF274 GTRD no Bone Marrow (K562) 14530192 117 108391743
chr19 14529063 14530075 ZNF274 GTRD no Bone Marrow (K562) 14530192 117 108391744
chr19 14529064 14529239 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 14530192 953 108391745
chr19 14529065 14529819 ZNF274 GTRD no Bone Marrow (K562) 14530192 373 108391746
chr19 14529068 14530012 ZBTB33 GTRD no Lung (A549) 14530192 180 108391747
chr19 14529069 14529956 CTCF GTRD no Lung 14530192 236 108391748
chr19 14529069 14530428 ZNF274 GTRD no Liver (HepG2) 14530192 236 108391749
chr19 14529070 14529075 SP1 TRANSFAC yes 14530192 1117 70813126
chr19 14529070 14529076 SP1 TRANSFAC yes 14530192 1116 70813127
chr19 14529070 14529237 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 14530192 955 108391750
chr19 14529071 14530469 ZNF274 GTRD no Liver (HepG2) 14530192 277 108391751
chr19 14529072 14529085 NFKB1 JASPAR yes 14530192 1107 70813128
chr19 14529072 14529085 NFKB2 JASPAR yes 14530192 1107 70813129
chr19 14529072 14530268 ZNF274 GTRD no Bone Marrow (K562) 14530192 76 108391752
chr19 14529073 14529083 NFKB1 JASPAR yes 14530192 1109 70813130
chr19 14529073 14529083 RELA JASPAR yes 14530192 1109 70813131
chr19 14529073 14529083 REL JASPAR yes 14530192 1109 70813132
chr19 14529073 14529084 NFKB1 JASPAR yes 14530192 1108 70813133
chr19 14529073 14529086 NFKB2 JASPAR yes 14530192 1106 70813134
chr19 14529074 14529085 NFKB1 JASPAR yes 14530192 1107 70813135
chr19 14529076 14529563 ZNF274 GTRD no Blood (GM12878) 14530192 629 108391753
chr19 14529078 14529089 E2F4 JASPAR yes 14530192 1103 70813136
chr19 14529078 14529092 E2F7 JASPAR yes 14530192 1100 70813137
chr19 14529078 14530226 ZNF274 GTRD no Liver (HepG2) 14530192 34 108391754
chr19 14529080 14529090 SP1 JASPAR yes 14530192 1102 70813138
chr19 14529081 14529087 SP1 TRANSFAC yes 14530192 1105 70813139
chr19 14529081 14529091 SP1 JASPAR yes 14530192 1101 70813140
chr19 14529083 14529088 SP1 TRANSFAC yes 14530192 1104 70813141
chr19 14529084 14529250 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 14530192 942 108391755
chr19 14529087 14530080 ZNF274 GTRD no Blood (GM12878) 14530192 112 108391756
chr19 14529087 14530379 ZNF274 GTRD no Liver (HepG2) 14530192 187 108391757
chr19 14529088 14529102 GLIS3 JASPAR yes 14530192 1090 70813142
chr19 14529088 14529215 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 977 108391758
chr19 14529091 14529910 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 282 108391759
chr19 14529093 14530343 ZNF274 GTRD no Liver (HepG2) 14530192 151 108391760
chr19 14529100 14529929 ZBTB33 GTRD no Brain (SK-N-SH) 14530192 263 108391761
chr19 14529110 14529122 E2F1 JASPAR yes 14530192 1070 70813143
chr19 14529114 14530197 ZNF274 GTRD no Liver (HepG2) 14530192 5 108391762
chr19 14529116 14530315 ZNF274 GTRD no Blood (GM12878) 14530192 123 108391763
chr19 14529116 14530350 ZNF274 GTRD no Blood (GM12878) 14530192 158 108391764
chr19 14529118 14529594 MYOD GTRD no Muscle (Myoblast) 14530192 598 108391765
chr19 14529126 14529137 ESRRB JASPAR yes 14530192 1055 70813144
chr19 14529129 14529143 TCF7L2 JASPAR yes 14530192 1049 70813145
chr19 14529129 14530202 ZNF274 GTRD no Blood (GM12878) 14530192 10 108391766
chr19 14529134 14529146 PKNOX1 JASPAR yes 14530192 1046 70813146
chr19 14529134 14529146 TGIF1 JASPAR yes 14530192 1046 70813147
chr19 14529134 14529146 TGIF2 JASPAR yes 14530192 1046 70813148
chr19 14529136 14529925 ZNF274 GTRD no Blood (GM12878) 14530192 267 108391767
chr19 14529137 14530573 ZNF274 GTRD no Cervix (HeLa-S3) 14530192 381 108391768
chr19 14529140 14529148 MEIS2 JASPAR yes 14530192 1044 70813149
chr19 14529140 14529148 MEIS3 JASPAR yes 14530192 1044 70813150
chr19 14529149 14529159 RELA JASPAR yes 14530192 1033 70813151
chr19 14529151 14529675 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 517 108391769
chr19 14529160 14529776 ZNF274 GTRD no Blood (GM12878) 14530192 416 108391770
chr19 14529170 14529180 CLOCK JASPAR yes 14530192 1012 70813152
chr19 14529170 14529180 HEY1 JASPAR yes 14530192 1012 70813153
chr19 14529170 14529180 HEY2 JASPAR yes 14530192 1012 70813154
chr19 14529170 14529702 ZNF274 GTRD no Bone Marrow (K562) 14530192 490 108391771
chr19 14529171 14529178 USF1 JASPAR yes 14530192 1014 70813155
chr19 14529172 14529177 MYC TRANSFAC yes 14530192 1015 70813156
chr19 14529172 14529177 USF1 TRANSFAC yes 14530192 1015 70813157
chr19 14529172 14529177 USF2 TRANSFAC yes 14530192 1015 70813158
chr19 14529180 14530176 ZNF274 GTRD no Bone Marrow (K562) 14530192 16 108391772
chr19 14529182 14530421 ZNF274 GTRD no Bone Marrow (K562) 14530192 229 108391773
chr19 14529185 14529202 RARA JASPAR yes 14530192 990 70813159
chr19 14529186 14529642 ZNF274 GTRD no Liver (HepG2) 14530192 550 108391774
chr19 14529187 14529642 ZNF274 GTRD no Blood (GM12878) 14530192 550 108391775
chr19 14529187 14529691 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 14530192 501 108391776
chr19 14529190 14529199 NKX2-8 JASPAR yes 14530192 993 70813160
chr19 14529194 14529209 TFAP2C JASPAR yes 14530192 983 70813161
chr19 14529197 14530373 ZNF274 GTRD no Bone Marrow (K562) 14530192 181 108391777
chr19 14529198 14529204 MZF1 JASPAR yes 14530192 988 70813162
chr19 14529206 14530291 CTCF GTRD no Spleen 14530192 99 108391778
chr19 14529208 14529438 ZNF274 GTRD no Blood (GM12878) 14530192 754 108391779
chr19 14529209 14530122 ZNF274 GTRD no Liver (HepG2) 14530192 70 108391780
chr19 14529210 14530094 ZNF274 GTRD no Blood (GM12878) 14530192 98 108391781
chr19 14529214 14530132 ZNF274 GTRD no Bone Marrow (K562) 14530192 60 108391782
chr19 14529215 14530225 ZNF274 GTRD no Liver (HepG2) 14530192 33 108391783
chr19 14529216 14530300 ZNF274 GTRD no Liver (HepG2) 14530192 108 108391784
SNPs associated with DDX39A[ENSG00000123136.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr19 14128459 rs181886315 G C 391172 Esophagus 0.182839 5453253
chr19 14335183 rs2420528 A T 184448 Heart 0.250214 5454323
chr19 14153293 rs35026308 T C 366338 Heart 0.317203 5453456
chr19 14614952 rs113545020 C T 84760 Uterus 0.196984 5456941
Details of DDX39A[ENSG00000123136.10]
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Genomic Location chr19:14519631-14530192[-]
TSS 14530192
Gene Name DDX39A
Ensembl ID ENSG00000123136.10
ENTREZID 10212
Uniprot
O00148
Protein Name
ATP-dependent RNA helicase DDX39A
Expression levels of DDX39A[ENSG00000123136.10]
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