EnhancerDB
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Enhancers that regulate CGA[ENSG00000135346.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr6 87708965 87713435 enh106285 87804824 91389
Peripheral Blood (MM.1S)
chr6 87727434 87727816 vista52686 87804824 77008
VISTA
chr6 87752965 87761755 enh106286 87804824 43069
Peripheral Blood (MM.1S)
chr6 87761945 87766095 enh106287 87804824 38729
Peripheral Blood (MM.1S)
chr6 87774204 87778486 enh115962 87804824 26338
Brain (SK-N-SH)
chr6 87781265 87786135 enh55879 87804824 18689
Uterus Large Intestine Stomach
chr6 87800989 87801207 vista52687 87804824 3617
VISTA
chr6 87810125 87818135 enh23398 87804824 5301
Astrocyte Placenta Large Intestine
chr6 87825753 87830103 enh59652 87804824 20929
Skin (Keratinocyte) Lung (PC-9)
chr6 87832223 87832245 vista52688 87804824 27399
VISTA
chr6 87838825 87846015 enh23399 87804824 34001
Placenta
chr6 87859425 87864515 enh100523 87804824 54601
Uterus
chr6 87870505 87874655 enh109049 87804824 65681
Lung (PC-9)
chr6 87880114 87896715 enh9226 87804824 75290
Bone (Osteoblast) Blood (GM12878) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Neural Stem Cells (H9) Blood (T-cell) Stomach
chr6 87881047 87881581 vista52689 87804824 76223
VISTA
chr6 87897430 87897787 vista52690 87804824 92606
VISTA
chr6 87903145 87912755 enh9227 87804824 98321
Muscle (A673) Brain (SK-N-MC) Blood (Karpas-422) Blood (GM12878)
Transcript facotrs that regulate CGA[ENSG00000135346.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr6 87801016 87801020 YY1 TRANSFAC yes 87804824 3804 70396996
chr6 87801028 87801039 DUX4 JASPAR yes 87804824 3785 70396997
chr6 87801034 87801038 YY1 TRANSFAC yes 87804824 3786 70396998
chr6 87801037 87801040 MYB TRANSFAC yes 87804824 3784 70396999
chr6 87801039 87801054 FOXP1 JASPAR yes 87804824 3770 70397000
chr6 87801041 87801056 FOXP1 JASPAR yes 87804824 3768 70397001
chr6 87801086 87801090 YY1 TRANSFAC yes 87804824 3734 70397002
chr6 87801090 87801101 FOXB1 JASPAR yes 87804824 3723 70397003
chr6 87801090 87801101 FOXC1 JASPAR yes 87804824 3723 70397004
chr6 87801096 87801108 MEF2A JASPAR yes 87804824 3716 70397005
chr6 87801097 87801111 GATA2 JASPAR yes 87804824 3713 70397006
chr6 87801098 87801102 YY1 TRANSFAC yes 87804824 3722 70397007
chr6 87801110 87801120 EVX1 JASPAR yes 87804824 3704 70397008
chr6 87801110 87801120 EVX2 JASPAR yes 87804824 3704 70397009
chr6 87801129 87801144 MEF2C JASPAR yes 87804824 3680 70397010
chr6 87801131 87801147 POU4F2 JASPAR yes 87804824 3677 70397011
chr6 87801146 87801157 FOXC1 JASPAR yes 87804824 3667 70397012
chr6 87801146 87801158 FOXC2 JASPAR yes 87804824 3666 70397013
chr6 87801173 87801184 PROP1 JASPAR yes 87804824 3640 70397014
chr6 87801192 87801205 POU3F3 JASPAR yes 87804824 3619 70397015
chr6 87801193 87801205 POU3F1 JASPAR yes 87804824 3619 70397016
chr6 87801193 87801205 POU3F2 JASPAR yes 87804824 3619 70397017
chr6 87801199 87801203 YY1 TRANSFAC yes 87804824 3621 70397018
SNPs associated with CGA[ENSG00000135346.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr6 88626861 rs4076053 G A 822037 Esophagus 0.343559 9177704
chr6 86865139 rs6930952 T C 930077 Esophagus 0.02242 9171552
chr6 88433623 rs146881226 G A 628799 Spleen 0.435101 9175989
Details of CGA[ENSG00000135346.4]
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Genomic Location chr6:87795216-87804824[-]
TSS 87804824
Gene Name CGA
Ensembl ID ENSG00000135346.4
ENTREZID 1081
Uniprot
A0A087WYZ4
Q6I9S8
P01215
Protein Name
Glycoprotein hormones alpha chain
Expression levels of CGA[ENSG00000135346.4]
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