EnhancerDB
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Enhancers that regulate NICN1[ENSG00000145029.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 49368585 49372735 enh48691 49466759 94024
Thymus Stomach
chr3 49379445 49392755 enh7203 49466759 74004
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
chr3 49382516 49382833 vista40877 49466759 83926
VISTA
chr3 49389809 49389972 vista40878 49466759 76787
VISTA
chr3 49413089 49419555 enh20585 49466759 47204
Prostate (PC-3) Esophagus Astrocyte Blood (GM12878) Placenta Colon (HCT116) Muscle (Myoblast)
chr3 49419751 49431500 enh63137 49466759 35259
Esophagus Prostate (PC-3) Cervix (HeLa-S3) Colon (HCT116)
chr3 49425171 49425361 vista40879 49466759 41398
VISTA
chr3 49432126 49441591 enh35394 49466759 25168
Bone Marrow (K562) Astrocyte Stomach Muscle (A673) Colon (HCT116) Thyroid Uterus Heart
chr3 49444905 49449295 enh100022 49466759 17464
Uterus
chr3 49479245 49501124 enh7204 49466759 12486
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
chr3 49503154 49503264 vista40880 49466759 36395
VISTA
chr3 49518245 49524115 enh20586 49466759 51486
Liver (HepG2) Colon (HCT116) Placenta Neural Stem Cells (H9) Heart
chr3 49529405 49541046 enh20587 49466759 62646
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Breast Thyroid Pancreas Spleen Muscle (Myotube) Uterus Thymus Heart
chr3 49545745 49553515 enh20588 49466759 78986
Stomach Placenta Lung (PC-9) Epithelial (MCF-7)
chr3 49553545 49563819 enh20589 49466759 86786
Skin (Keratinocyte) Liver (HepG2) Prostate (RWPE1) Esophagus Liver Placenta Breast Pancreas Muscle (Myotube) Thymus Stomach
Transcript facotrs that regulate NICN1[ENSG00000145029.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with NICN1[ENSG00000145029.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 49284513 rs12637346 A G 175866 Esophagus 3.39271e-06 6724833
chr3 49500414 rs1106620 G A 33655 Heart 0.0198816 6725905
chr3 49642027 rs4241405 C T 175268 Heart 0.0127894 6726486
chr3 49609477 rs1532204 C G 142718 Pancreas 0.00206562 6726382
chr3 49559485 rs13062429 A G 92726 Ovary 0.0122142 6726229
Details of NICN1[ENSG00000145029.7]
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Genomic Location chr3:49460379-49466759[-]
TSS 49466759
Gene Name NICN1
Ensembl ID ENSG00000145029.7
ENTREZID 84276
Uniprot
Q9BSH3
B2R7Q3
Protein Name
Nicolin-1
Expression levels of NICN1[ENSG00000145029.7]
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