EnhancerDB
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Enhancers that regulate CHRNB2[ENSG00000160716.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 154447249 154470672 enh12277 154540257 69585
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Lung Blood (OCI-LY7) Lung (A549) Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Stomach Pancreas (Panc1) Spleen Uterus Blood (T-cell) Heart
chr1 154468503 154468634 vista3380 154540257 71623
VISTA
chr1 154529043 154529152 vista3381 154540257 11105
VISTA
chr1 154542965 154548115 enh639 154540257 2708
Blood (Karpas-422)
chr1 154577703 154577929 vista3382 154540257 37446
VISTA
chr1 154579303 154579782 vista3383 154540257 39046
VISTA
chr1 154582047 154582244 vista3384 154540257 41790
VISTA
chr1 154584095 154584221 vista3385 154540257 43838
VISTA
chr1 154584818 154591595 enh27140 154540257 44561
Astrocyte Neural Stem Cells (H9)
chr1 154587281 154587469 vista3386 154540257 47024
VISTA
chr1 154592085 154599395 enh640 154540257 51828
Prostate (RWPE1) Stomach Placenta Blood (Karpas-422) Neural Stem Cells (H9) Heart
chr1 154625185 154629335 enh111511 154540257 84928
Brain (SK-N-MC)
chr1 154630085 154639055 enh43054 154540257 89828
Thyroid Muscle (Myotube)
Transcript facotrs that regulate CHRNB2[ENSG00000160716.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 154543968 154543982 PAX6 JASPAR yes 154540257 3711 32297550
chr1 154543973 154543987 ATF7 JASPAR yes 154540257 3716 32297551
chr1 154543973 154543987 BATF3 JASPAR yes 154540257 3716 32297552
chr1 154543974 154543986 JDP2 JASPAR yes 154540257 3717 32297553
chr1 154543975 154543988 DUXA JASPAR yes 154540257 3718 32297554
chr1 154544002 154544023 ZNF263 JASPAR yes 154540257 3745 32297555
chr1 154544011 154544032 ZNF263 JASPAR yes 154540257 3754 32297556
chr1 154544012 154544030 RARA JASPAR yes 154540257 3755 32297557
chr1 154544015 154544026 DUX4 JASPAR yes 154540257 3758 32297558
chr1 154544052 154544058 YY1 JASPAR yes 154540257 3795 32297559
chr1 154544072 154544078 YY1 JASPAR yes 154540257 3815 32297560
chr1 154544093 154544107 XBP1 JASPAR yes 154540257 3836 32297561
chr1 154544095 154544100 ATF1 TRANSFAC yes 154540257 3838 32297562
chr1 154544130 154544140 GABPA JASPAR yes 154540257 3873 32297563
chr1 154544130 154544143 ELF1 JASPAR yes 154540257 3873 32297564
chr1 154544131 154544152 ZNF263 JASPAR yes 154540257 3874 32297565
chr1 154544157 154544170 SMAD2 JASPAR yes 154540257 3900 32297566
chr1 154544162 154544170 TBX15 JASPAR yes 154540257 3905 32297567
chr1 154544165 154544179 GLIS2 JASPAR yes 154540257 3908 32297568
chr1 154544165 154544179 GLIS3 JASPAR yes 154540257 3908 32297569
chr1 154544193 154544210 NR3C1 JASPAR yes 154540257 3936 32297570
chr1 154544193 154544210 NR3C2 JASPAR yes 154540257 3936 32297571
chr1 154544302 154544313 ESRRB JASPAR yes 154540257 4045 32297572
chr1 154544310 154544320 GABPA JASPAR yes 154540257 4053 32297573
chr1 154544312 154544323 STAT1 JASPAR yes 154540257 4055 32297574
chr1 154544356 154544362 YY1 JASPAR yes 154540257 4099 32297575
chr1 154544375 154544386 NRF1 JASPAR yes 154540257 4118 32297576
chr1 154544380 154544391 NRF1 JASPAR yes 154540257 4123 32297577
chr1 154544382 154544393 TFAP2A JASPAR yes 154540257 4125 32297578
chr1 154544382 154544393 TFAP2B JASPAR yes 154540257 4125 32297579
chr1 154544382 154544393 TFAP2C JASPAR yes 154540257 4125 32297580
chr1 154544402 154544413 E2F1 JASPAR yes 154540257 4145 32297581
chr1 154544426 154544439 ELF3 JASPAR yes 154540257 4169 32297582
chr1 154544429 154544435 ETS1 JASPAR yes 154540257 4172 32297583
chr1 154544429 154544435 SPI1 JASPAR yes 154540257 4172 32297584
chr1 154544435 154544450 TFAP2A JASPAR yes 154540257 4178 32297585
chr1 154544435 154544450 TFAP2C JASPAR yes 154540257 4178 32297586
chr1 154544438 154544449 EBF1 JASPAR yes 154540257 4181 32297587
chr1 154544438 154544449 TFAP2A JASPAR yes 154540257 4181 32297588
chr1 154544438 154544449 TFAP2B JASPAR yes 154540257 4181 32297589
chr1 154544438 154544451 TFAP2A JASPAR yes 154540257 4181 32297590
chr1 154544438 154544451 TFAP2B JASPAR yes 154540257 4181 32297591
chr1 154544438 154544451 TFAP2C JASPAR yes 154540257 4181 32297592
chr1 154544439 154544448 TFAP2A JASPAR yes 154540257 4182 32297593
chr1 154544440 154544451 EBF1 JASPAR yes 154540257 4183 32297594
chr1 154544445 154544450 SP1 TRANSFAC yes 154540257 4188 32297595
chr1 154544456 154544468 HES5 JASPAR yes 154540257 4199 32297596
chr1 154544457 154544467 BHLHE40 JASPAR yes 154540257 4200 32297597
chr1 154544457 154544467 CLOCK JASPAR yes 154540257 4200 32297598
chr1 154544457 154544467 HEY1 JASPAR yes 154540257 4200 32297599
chr1 154544457 154544467 MAX JASPAR yes 154540257 4200 32297600
chr1 154544457 154544467 MLXIPL JASPAR yes 154540257 4200 32297601
chr1 154544457 154544467 MNT JASPAR yes 154540257 4200 32297602
chr1 154544458 154544468 MAX JASPAR yes 154540257 4201 32297603
chr1 154544459 154544464 MYC TRANSFAC yes 154540257 4202 32297604
chr1 154544459 154544464 USF1 TRANSFAC yes 154540257 4202 32297605
chr1 154544459 154544464 USF2 TRANSFAC yes 154540257 4202 32297606
chr1 154544499 154544504 SP1 TRANSFAC yes 154540257 4242 32297607
chr1 154544499 154544513 PLAG1 JASPAR yes 154540257 4242 32297608
chr1 154544501 154544514 TFAP2A JASPAR yes 154540257 4244 32297609
chr1 154544501 154544514 TFAP2B JASPAR yes 154540257 4244 32297610
chr1 154544501 154544514 TFAP2C JASPAR yes 154540257 4244 32297611
chr1 154544528 154544533 SP1 TRANSFAC yes 154540257 4271 32297612
chr1 154544533 154544542 TFAP2A JASPAR yes 154540257 4276 32297613
chr1 154544537 154544551 PLAG1 JASPAR yes 154540257 4280 32297614
chr1 154544542 154544553 EBF1 JASPAR yes 154540257 4285 32297615
chr1 154544556 154544571 RUNX2 JASPAR yes 154540257 4299 32297616
chr1 154544564 154544583 CTCF JASPAR yes 154540257 4307 32297617
chr1 154544575 154544580 SP1 TRANSFAC yes 154540257 4318 32297618
chr1 154544577 154544589 ZBTB7A JASPAR yes 154540257 4320 32297619
chr1 154544604 154544614 MAX JASPAR yes 154540257 4347 32297620
chr1 154544604 154544618 ZIC1 JASPAR yes 154540257 4347 32297621
chr1 154544604 154544619 ZIC4 JASPAR yes 154540257 4347 32297622
chr1 154544642 154544653 TFAP2A JASPAR yes 154540257 4385 32297623
chr1 154544642 154544653 TFAP2B JASPAR yes 154540257 4385 32297624
chr1 154544642 154544653 TFAP2C JASPAR yes 154540257 4385 32297625
chr1 154544690 154544707 BCL6B JASPAR yes 154540257 4433 32297626
chr1 154544693 154544698 GATA1 TRANSFAC yes 154540257 4436 32297627
chr1 154544747 154544753 PEA3 TRANSFAC yes 154540257 4490 32297628
chr1 154544752 154544766 JUN JASPAR yes 154540257 4495 32297629
chr1 154544752 154544766 RORA JASPAR yes 154540257 4495 32297630
chr1 154544755 154544766 FOSL2 JASPAR yes 154540257 4498 32297631
chr1 154544755 154544766 JUNB JASPAR yes 154540257 4498 32297632
chr1 154544756 154544767 FOS JASPAR yes 154540257 4499 32297633
chr1 154544756 154544767 FOSL1 JASPAR yes 154540257 4499 32297634
chr1 154544756 154544767 JUND JASPAR yes 154540257 4499 32297635
chr1 154544758 154544765 JUN TRANSFAC yes 154540257 4501 32297636
chr1 154544772 154544793 REST JASPAR yes 154540257 4515 32297637
chr1 154544773 154544792 REST JASPAR yes 154540257 4516 32297638
chr1 154544809 154544820 ELK4 JASPAR yes 154540257 4552 32297639
chr1 154544810 154544820 GABPA JASPAR yes 154540257 4553 32297640
chr1 154544810 154544822 ELF1 JASPAR yes 154540257 4553 32297641
chr1 154544810 154544822 ELF4 JASPAR yes 154540257 4553 32297642
chr1 154544810 154544825 STAT1 JASPAR yes 154540257 4553 32297643
chr1 154544811 154544820 ELK4 JASPAR yes 154540257 4554 32297644
chr1 154544812 154544818 ETS1 JASPAR yes 154540257 4555 32297645
chr1 154544812 154544818 SPI1 JASPAR yes 154540257 4555 32297646
chr1 154544844 154544862 ESR2 JASPAR yes 154540257 4587 32297647
chr1 154544852 154544863 ESRRA JASPAR yes 154540257 4595 32297648
chr1 154544852 154544863 ESRRB JASPAR yes 154540257 4595 32297649
chr1 154544862 154544873 FLI1 JASPAR yes 154540257 4605 32297650
chr1 154544863 154544878 TFAP2A JASPAR yes 154540257 4606 32297651
chr1 154544886 154544890 LFA1 TRANSFAC yes 154540257 4629 32297652
chr1 154544905 154544909 LFA1 TRANSFAC yes 154540257 4648 32297653
chr1 154544908 154544924 SRF JASPAR yes 154540257 4651 32297654
chr1 154544916 154544925 THAP1 JASPAR yes 154540257 4659 32297655
chr1 154544917 154544936 PAX5 JASPAR yes 154540257 4660 32297656
chr1 154544918 154544938 ESR1 JASPAR yes 154540257 4661 32297657
chr1 154544919 154544923 LFA1 TRANSFAC yes 154540257 4662 32297658
chr1 154544957 154544963 NFIC JASPAR yes 154540257 4700 32297659
chr1 154544957 154544971 TLX1 JASPAR yes 154540257 4700 32297660
chr1 154544958 154544972 TLX1 JASPAR yes 154540257 4701 32297661
chr1 154544968 154544983 RFX5 JASPAR yes 154540257 4711 32297662
chr1 154544991 154545001 ZNF740 JASPAR yes 154540257 4734 32297663
chr1 154544993 154545014 ZNF263 JASPAR yes 154540257 4736 32297664
chr1 154544994 154545000 MZF1 JASPAR yes 154540257 4737 32297665
chr1 154544995 154545005 SP1 JASPAR yes 154540257 4738 32297666
chr1 154544995 154545005 SP1 TRANSFAC yes 154540257 4738 32297667
chr1 154544996 154545006 SP1 JASPAR yes 154540257 4739 32297668
chr1 154544998 154545012 GLIS2 JASPAR yes 154540257 4741 32297669
chr1 154544998 154545012 ZIC1 JASPAR yes 154540257 4741 32297670
chr1 154544998 154545013 ZIC3 JASPAR yes 154540257 4741 32297671
chr1 154544998 154545013 ZIC4 JASPAR yes 154540257 4741 32297672
chr1 154545015 154545024 HIC2 JASPAR yes 154540257 4758 32297673
chr1 154545034 154545037 MYB TRANSFAC yes 154540257 4777 32297674
chr1 154545058 154545069 NFE2 JASPAR yes 154540257 4801 32297675
chr1 154545080 154545099 CTCF JASPAR yes 154540257 4823 32297676
chr1 154545091 154545095 LFA1 TRANSFAC yes 154540257 4834 32297677
chr1 154545110 154545130 RREB1 JASPAR yes 154540257 4853 32297678
chr1 154545118 154545129 FOXH1 JASPAR yes 154540257 4861 32297679
chr1 154545119 154545139 RREB1 JASPAR yes 154540257 4862 32297680
chr1 154545126 154545135 SP1 TRANSFAC yes 154540257 4869 32297681
chr1 154545126 154545136 SP1 JASPAR yes 154540257 4869 32297682
chr1 154545127 154545147 RREB1 JASPAR yes 154540257 4870 32297683
chr1 154545128 154545134 MAZ TRANSFAC yes 154540257 4871 32297684
chr1 154545132 154545152 RREB1 JASPAR yes 154540257 4875 32297685
chr1 154545144 154545154 SP1 JASPAR yes 154540257 4887 32297686
chr1 154545146 154545151 SP1 TRANSFAC yes 154540257 4889 32297687
chr1 154545146 154545152 SP1 TRANSFAC yes 154540257 4889 32297688
chr1 154545195 154545209 ONECUT1 JASPAR yes 154540257 4938 32297689
chr1 154545195 154545209 ONECUT2 JASPAR yes 154540257 4938 32297690
chr1 154545195 154545209 ONECUT3 JASPAR yes 154540257 4938 32297691
chr1 154545197 154545208 FOXB1 JASPAR yes 154540257 4940 32297692
chr1 154545197 154545208 FOXC1 JASPAR yes 154540257 4940 32297693
chr1 154545198 154545208 CUX1 JASPAR yes 154540257 4941 32297694
chr1 154545198 154545208 CUX2 JASPAR yes 154540257 4941 32297695
chr1 154545205 154545210 GATA2 JASPAR yes 154540257 4948 32297696
chr1 154545210 154545229 REST JASPAR yes 154540257 4953 32297697
chr1 154545221 154545235 EBF1 JASPAR yes 154540257 4964 32297698
chr1 154545223 154545234 EBF1 JASPAR yes 154540257 4966 32297699
chr1 154545231 154545237 YY1 JASPAR yes 154540257 4974 32297700
chr1 154545237 154545253 POU4F2 JASPAR yes 154540257 4980 32297701
chr1 154545237 154545253 POU4F3 JASPAR yes 154540257 4980 32297702
chr1 154545239 154545253 POU4F1 JASPAR yes 154540257 4982 32297703
chr1 154545240 154545254 POU4F1 JASPAR yes 154540257 4983 32297704
chr1 154545240 154545256 POU4F3 JASPAR yes 154540257 4983 32297705
chr1 154545246 154545250 YY1 TRANSFAC yes 154540257 4989 32297706
chr1 154545253 154545274 ZNF263 JASPAR yes 154540257 4996 32297707
chr1 154545256 154545266 GCM2 JASPAR yes 154540257 4999 32297708
chr1 154545257 154545267 ZNF740 JASPAR yes 154540257 5000 32297709
SNPs associated with CHRNB2[ENSG00000160716.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 153571139 rs150941544 G A 969118 Esophagus 0.1262 635317
chr1 154544651 rs4845378 G T 0 Esophagus 2.79473e-11 639272
chr1 154394297 rs7525477 G A 145960 Esophagus 0.262801 638599
chr1 154788815 rs59517499 C T 236313 Pancreas 0.257026 640928
chr1 155145392 rs41264911 G A,C 592890 Breast 0.371194 643448
chr1 154783208 rs17663129 G C 230706 Ovary 0.13116 640846
chr1 154330183 rs10218433 T C 210074 Thyroid 0.203412 638091
chr1 154668908 rs115513320 G T 116406 Lung 0.0228581 639866
chr1 154432342 rs77741705 C G 107915 Adrenal 0.396775 638908
Details of CHRNB2[ENSG00000160716.4]
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Genomic Location chr1:154540257-154552502[+]
TSS 154540257
Gene Name CHRNB2
Ensembl ID ENSG00000160716.4
ENTREZID 1141
Uniprot
Q5SXY3
P17787
Protein Name
beta 2
nicotinic
Cholinergic receptor
Neuronal acetylcholine receptor subunit beta-2
Expression levels of CHRNB2[ENSG00000160716.4]
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