EnhancerDB
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Enhancers that regulate TMCO4[ENSG00000162542.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 20028309 20033239 enh61806 20126438 93199
Esophagus
chr1 20035725 20039875 enh102979 20126438 86563
Kidney
chr1 20048431 20054385 enh42903 20126438 72053
Muscle (Myotube) Neural Stem Cells (H9)
chr1 20058982 20063516 enh26566 20126438 62922
Astrocyte Bone (Osteoblast) Muscle (Myoblast) Muscle (Myotube) Stomach
chr1 20076625 20080775 enh49674 20126438 45663
Large Intestine
chr1 20081105 20095655 enh26567 20126438 30783
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myotube)
chr1 20091332 20091506 vista625 20126438 34932
VISTA
chr1 20111066 20111358 vista626 20126438 15080
VISTA
chr1 20111105 20122489 enh11575 20126438 3949
Muscle (Myotube) Placenta Muscle (A673)
chr1 20132385 20139955 enh11576 20126438 5947
Placenta Stomach
chr1 20149865 20157315 enh92030 20126438 23427
Liver (HepG2) Cervix (HeLa-S3)
chr1 20164481 20164729 vista627 20126438 38043
VISTA
chr1 20169705 20180975 enh95363 20126438 43267
Thyroid Uterus Ovary
chr1 20185005 20201495 enh11577 20126438 58567
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Muscle (A673) Placenta Lung (PC-9) Muscle (Myotube) Uterus Epithelial (MCF-7)
chr1 20204786 20204981 vista628 20126438 78348
VISTA
Transcript facotrs that regulate TMCO4[ENSG00000162542.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 20121435 20121456 IRF1 JASPAR yes 20126438 4982 27218167
chr1 20121462 20121477 RFX5 JASPAR yes 20126438 4961 27218168
chr1 20121466 20121481 TFAP2A JASPAR yes 20126438 4957 27218169
chr1 20121466 20121481 TFAP2C JASPAR yes 20126438 4957 27218170
chr1 20121467 20121479 INSM1 JASPAR yes 20126438 4959 27218171
chr1 20121479 20121500 ZNF263 JASPAR yes 20126438 4938 27218172
chr1 20121482 20121503 ZNF263 JASPAR yes 20126438 4935 27218173
chr1 20121485 20121491 PEA3 TRANSFAC yes 20126438 4947 27218174
chr1 20121485 20121506 ZNF263 JASPAR yes 20126438 4932 27218175
chr1 20121488 20121509 ZNF263 JASPAR yes 20126438 4929 27218176
chr1 20121495 20121501 MAZ TRANSFAC yes 20126438 4937 27218177
chr1 20121495 20121506 E2F6 JASPAR yes 20126438 4932 27218178
chr1 20121499 20121504 ETS2 TRANSFAC yes 20126438 4934 27218179
chr1 20121499 20121519 RREB1 JASPAR yes 20126438 4919 27218180
chr1 20121503 20121523 RREB1 JASPAR yes 20126438 4915 27218181
chr1 20121510 20121520 HOXB13 JASPAR yes 20126438 4918 27218182
chr1 20121510 20121520 HOXD13 JASPAR yes 20126438 4918 27218183
chr1 20121511 20121521 GSX2 JASPAR yes 20126438 4917 27218184
chr1 20121512 20121520 BSX JASPAR yes 20126438 4918 27218185
chr1 20121512 20121521 VENTX JASPAR yes 20126438 4917 27218186
chr1 20121544 20121559 HSF1 JASPAR yes 20126438 4879 27218187
chr1 20121545 20121558 HSF1 JASPAR yes 20126438 4880 27218188
chr1 20121545 20121558 HSF2 JASPAR yes 20126438 4880 27218189
chr1 20121545 20121558 HSF4 JASPAR yes 20126438 4880 27218190
chr1 20121549 20121564 HSF1 JASPAR yes 20126438 4874 27218191
chr1 20121561 20121572 CEBPB JASPAR yes 20126438 4866 27218192
chr1 20121561 20121581 TBX19 JASPAR yes 20126438 4857 27218193
chr1 20121562 20121572 CEBPB JASPAR yes 20126438 4866 27218194
chr1 20121562 20121572 CEBPD JASPAR yes 20126438 4866 27218195
chr1 20121562 20121572 CEBPE JASPAR yes 20126438 4866 27218196
chr1 20121562 20121572 CEBPG JASPAR yes 20126438 4866 27218197
chr1 20121562 20121573 CEBPA JASPAR yes 20126438 4865 27218198
chr1 20121563 20121579 T JASPAR yes 20126438 4859 27218199
chr1 20121589 20121593 YY1 TRANSFAC yes 20126438 4845 27218200
chr1 20121602 20121611 NKX3-2 JASPAR yes 20126438 4827 27218201
chr1 20121602 20121612 NKX2-3 JASPAR yes 20126438 4826 27218202
chr1 20121603 20121611 ISL2 JASPAR yes 20126438 4827 27218203
chr1 20121633 20121643 TEAD1 JASPAR yes 20126438 4795 27218204
chr1 20121633 20121643 TEAD4 JASPAR yes 20126438 4795 27218205
chr1 20121639 20121650 FOXH1 JASPAR yes 20126438 4788 27218206
chr1 20121643 20121647 YY1 TRANSFAC yes 20126438 4791 27218207
chr1 20121644 20121655 HOXA10 JASPAR yes 20126438 4783 27218208
chr1 20121648 20121659 YY2 JASPAR yes 20126438 4779 27218209
chr1 20121649 20121661 YY1 JASPAR yes 20126438 4777 27218210
chr1 20121654 20121658 YY1 TRANSFAC yes 20126438 4780 27218211
chr1 20121665 20121671 TBP TRANSFAC yes 20126438 4767 27218212
chr1 20121679 20121684 SP1 TRANSFAC yes 20126438 4754 27218213
chr1 20121679 20121686 SP1 TRANSFAC yes 20126438 4752 27218214
chr1 20121731 20121736 SP1 TRANSFAC yes 20126438 4702 27218215
chr1 20121734 20121747 NFKB1 JASPAR yes 20126438 4691 27218216
chr1 20121736 20121742 ZNF354C JASPAR yes 20126438 4696 27218217
chr1 20121739 20121750 USF1 JASPAR yes 20126438 4688 27218218
chr1 20121739 20121750 USF2 JASPAR yes 20126438 4688 27218219
chr1 20121740 20121750 SREBF2 JASPAR yes 20126438 4688 27218220
chr1 20121742 20121747 USF2 TRANSFAC yes 20126438 4691 27218221
chr1 20121745 20121758 NR2F1 JASPAR yes 20126438 4680 27218222
chr1 20121746 20121754 CREB1 JASPAR yes 20126438 4684 27218223
chr1 20121747 20121765 RARA JASPAR yes 20126438 4673 27218224
chr1 20121749 20121753 ESR1 TRANSFAC yes 20126438 4685 27218225
chr1 20121774 20121786 YY1 JASPAR yes 20126438 4652 27218226
chr1 20121778 20121789 CEBPB JASPAR yes 20126438 4649 27218227
chr1 20121779 20121792 NFKB1 JASPAR yes 20126438 4646 27218228
chr1 20121779 20121792 NFKB2 JASPAR yes 20126438 4646 27218229
chr1 20121795 20121810 MEF2C JASPAR yes 20126438 4628 27218230
chr1 20121796 20121811 MEF2A JASPAR yes 20126438 4627 27218231
chr1 20121797 20121809 MEF2A JASPAR yes 20126438 4629 27218232
chr1 20121797 20121809 MEF2B JASPAR yes 20126438 4629 27218233
chr1 20121797 20121809 MEF2D JASPAR yes 20126438 4629 27218234
chr1 20121800 20121811 FOXH1 JASPAR yes 20126438 4627 27218235
chr1 20121816 20121835 REST JASPAR yes 20126438 4603 27218236
chr1 20121820 20121830 SP1 JASPAR yes 20126438 4608 27218237
chr1 20121833 20121848 SCRT1 JASPAR yes 20126438 4590 27218238
chr1 20121834 20121844 FIGLA JASPAR yes 20126438 4594 27218239
chr1 20121834 20121844 ID4 JASPAR yes 20126438 4594 27218240
chr1 20121834 20121844 TCF3 JASPAR yes 20126438 4594 27218241
chr1 20121834 20121844 TCF4 JASPAR yes 20126438 4594 27218242
chr1 20121835 20121844 SNAI2 JASPAR yes 20126438 4594 27218243
chr1 20121836 20121841 USF2 TRANSFAC yes 20126438 4597 27218244
chr1 20121890 20121900 SP1 JASPAR yes 20126438 4538 27218245
chr1 20121890 20121911 ZNF263 JASPAR yes 20126438 4527 27218246
chr1 20121892 20121897 SP1 TRANSFAC yes 20126438 4541 27218247
chr1 20121892 20121904 HINFP JASPAR yes 20126438 4534 27218248
chr1 20121897 20121914 ESR1 JASPAR yes 20126438 4524 27218249
chr1 20121915 20121926 CEBPB JASPAR yes 20126438 4512 27218250
chr1 20121915 20121927 HLF JASPAR yes 20126438 4511 27218251
chr1 20121916 20121926 CEBPB JASPAR yes 20126438 4512 27218252
chr1 20121916 20121926 CEBPD JASPAR yes 20126438 4512 27218253
chr1 20121916 20121926 CEBPE JASPAR yes 20126438 4512 27218254
chr1 20121916 20121926 CEBPG JASPAR yes 20126438 4512 27218255
chr1 20121916 20121927 CEBPA JASPAR yes 20126438 4511 27218256
chr1 20121958 20121962 NFE TRANSFAC yes 20126438 4476 27218257
chr1 20121965 20121979 FOXF2 JASPAR yes 20126438 4459 27218258
chr1 20121965 20121980 FOXP1 JASPAR yes 20126438 4458 27218259
chr1 20121966 20121977 FOXA1 JASPAR yes 20126438 4461 27218260
chr1 20121966 20121981 FOXA1 JASPAR yes 20126438 4457 27218261
chr1 20121967 20121978 FOXB1 JASPAR yes 20126438 4460 27218262
chr1 20121967 20121978 FOXC1 JASPAR yes 20126438 4460 27218263
chr1 20121967 20121979 FOXC2 JASPAR yes 20126438 4459 27218264
chr1 20121968 20121979 FOXP2 JASPAR yes 20126438 4459 27218265
chr1 20121969 20121983 ONECUT3 JASPAR yes 20126438 4455 27218266
chr1 20121969 20121984 FOXP1 JASPAR yes 20126438 4454 27218267
chr1 20121969 20121984 HNF1A JASPAR yes 20126438 4454 27218268
chr1 20121970 20121983 HNF1B JASPAR yes 20126438 4455 27218269
chr1 20121970 20121985 FOXA1 JASPAR yes 20126438 4453 27218270
chr1 20121971 20121982 FOXB1 JASPAR yes 20126438 4456 27218271
chr1 20121971 20121982 FOXC1 JASPAR yes 20126438 4456 27218272
chr1 20121971 20121982 PROP1 JASPAR yes 20126438 4456 27218273
chr1 20121971 20121983 FOXC2 JASPAR yes 20126438 4455 27218274
chr1 20121972 20121984 FOXI1 JASPAR yes 20126438 4454 27218275
chr1 20121973 20121988 FOXP1 JASPAR yes 20126438 4450 27218276
chr1 20121974 20121988 POU4F1 JASPAR yes 20126438 4450 27218277
chr1 20121974 20121990 POU4F2 JASPAR yes 20126438 4448 27218278
chr1 20121974 20121990 POU4F3 JASPAR yes 20126438 4448 27218279
chr1 20121978 20121994 POU4F3 JASPAR yes 20126438 4444 27218280
chr1 20121979 20121985 TBP TRANSFAC yes 20126438 4453 27218281
chr1 20121980 20121994 ONECUT3 JASPAR yes 20126438 4444 27218282
chr1 20121982 20121993 PROP1 JASPAR yes 20126438 4445 27218283
chr1 20121985 20121999 POU4F1 JASPAR yes 20126438 4439 27218284
chr1 20121985 20122001 POU4F3 JASPAR yes 20126438 4437 27218285
chr1 20121986 20122002 POU4F2 JASPAR yes 20126438 4436 27218286
chr1 20121986 20122002 POU4F3 JASPAR yes 20126438 4436 27218287
chr1 20121988 20122002 POU4F1 JASPAR yes 20126438 4436 27218288
chr1 20121988 20122003 HNF1A JASPAR yes 20126438 4435 27218289
chr1 20121989 20122002 HNF1B JASPAR yes 20126438 4436 27218290
chr1 20121999 20122005 TBP TRANSFAC yes 20126438 4433 27218291
chr1 20122014 20122018 YY1 TRANSFAC yes 20126438 4420 27218292
chr1 20122040 20122046 NFIC JASPAR yes 20126438 4392 27218293
chr1 20122051 20122065 CREB3L1 JASPAR yes 20126438 4373 27218294
chr1 20122052 20122062 MAX JASPAR yes 20126438 4376 27218295
chr1 20122052 20122063 USF2 JASPAR yes 20126438 4375 27218296
chr1 20122052 20122064 HES5 JASPAR yes 20126438 4374 27218297
chr1 20122052 20122064 HES7 JASPAR yes 20126438 4374 27218298
chr1 20122053 20122063 CLOCK JASPAR yes 20126438 4375 27218299
chr1 20122053 20122063 HEY1 JASPAR yes 20126438 4375 27218300
chr1 20122053 20122063 HEY2 JASPAR yes 20126438 4375 27218301
chr1 20122053 20122063 MAX JASPAR yes 20126438 4375 27218302
chr1 20122053 20122063 MNT JASPAR yes 20126438 4375 27218303
chr1 20122053 20122063 TFEB JASPAR yes 20126438 4375 27218304
chr1 20122053 20122064 USF1 JASPAR yes 20126438 4374 27218305
chr1 20122054 20122061 USF1 JASPAR yes 20126438 4377 27218306
chr1 20122054 20122064 MAX JASPAR yes 20126438 4374 27218307
chr1 20122055 20122060 MYC TRANSFAC yes 20126438 4378 27218308
chr1 20122055 20122060 USF1 TRANSFAC yes 20126438 4378 27218309
chr1 20122055 20122060 USF2 TRANSFAC yes 20126438 4378 27218310
chr1 20122077 20122087 SREBF2 JASPAR yes 20126438 4351 27218311
chr1 20122084 20122088 YY1 TRANSFAC yes 20126438 4350 27218312
chr1 20122096 20122104 OTX2 JASPAR yes 20126438 4334 27218313
chr1 20122108 20122113 SP1 TRANSFAC yes 20126438 4325 27218314
chr1 20122137 20122142 TFAP2A TRANSFAC yes 20126438 4296 27218315
chr1 20122137 20122143 MZF1 JASPAR yes 20126438 4295 27218316
chr1 20122159 20122164 MYB TRANSFAC yes 20126438 4274 27218317
chr1 20122160 20122170 RORA JASPAR yes 20126438 4268 27218318
chr1 20122161 20122172 ESRRA JASPAR yes 20126438 4266 27218319
chr1 20122161 20122172 ESRRB JASPAR yes 20126438 4266 27218320
chr1 20122163 20122171 NR4A2 JASPAR yes 20126438 4267 27218321
chr1 20122164 20122184 ESR1 JASPAR yes 20126438 4254 27218322
chr1 20122165 20122169 ESR1 TRANSFAC yes 20126438 4269 27218323
chr1 20122166 20122176 RORA JASPAR yes 20126438 4262 27218324
chr1 20122167 20122178 ESRRA JASPAR yes 20126438 4260 27218325
chr1 20122167 20122178 ESRRB JASPAR yes 20126438 4260 27218326
chr1 20122167 20122180 NR2F1 JASPAR yes 20126438 4258 27218327
chr1 20122169 20122177 NR4A2 JASPAR yes 20126438 4261 27218328
chr1 20122171 20122175 ESR1 TRANSFAC yes 20126438 4263 27218329
chr1 20122179 20122190 NFE2 JASPAR yes 20126438 4248 27218330
chr1 20122183 20122194 USF1 JASPAR yes 20126438 4244 27218331
chr1 20122184 20122194 TFE3 JASPAR yes 20126438 4244 27218332
chr1 20122184 20122194 TFEB JASPAR yes 20126438 4244 27218333
chr1 20122184 20122194 TFEC JASPAR yes 20126438 4244 27218334
chr1 20122184 20122195 USF2 JASPAR yes 20126438 4243 27218335
chr1 20122193 20122197 YY1 TRANSFAC yes 20126438 4241 27218336
chr1 20122224 20122228 LFA1 TRANSFAC yes 20126438 4210 27218337
chr1 20122226 20122238 YY1 JASPAR yes 20126438 4200 27218338
chr1 20122229 20122235 YY1 JASPAR yes 20126438 4203 27218339
chr1 20122263 20122272 RUNX2 JASPAR yes 20126438 4166 27218340
chr1 20122286 20122291 H4TF1 TRANSFAC yes 20126438 4147 27218341
chr1 20122341 20122345 NFE TRANSFAC yes 20126438 4093 27218342
chr1 20122342 20122347 GATA2 JASPAR yes 20126438 4091 27218343
chr1 20122343 20122349 ZNF354C JASPAR yes 20126438 4089 27218344
chr1 20122366 20122381 TFAP2C JASPAR yes 20126438 4057 27218345
chr1 20122369 20122380 TFAP2A JASPAR yes 20126438 4058 27218346
chr1 20122369 20122380 TFAP2B JASPAR yes 20126438 4058 27218347
chr1 20122369 20122380 TFAP2C JASPAR yes 20126438 4058 27218348
chr1 20122370 20122379 TFAP2A JASPAR yes 20126438 4059 27218349
chr1 20122375 20122390 SCRT1 JASPAR yes 20126438 4048 27218350
chr1 20122376 20122386 ID4 JASPAR yes 20126438 4052 27218351
chr1 20122376 20122386 TCF3 JASPAR yes 20126438 4052 27218352
chr1 20122376 20122386 TCF4 JASPAR yes 20126438 4052 27218353
chr1 20122377 20122386 SNAI2 JASPAR yes 20126438 4052 27218354
chr1 20122377 20122390 SCRT2 JASPAR yes 20126438 4048 27218355
chr1 20122378 20122383 USF2 TRANSFAC yes 20126438 4055 27218356
chr1 20122393 20122414 ZNF263 JASPAR yes 20126438 4024 27218357
chr1 20122394 20122397 MYB TRANSFAC yes 20126438 4041 27218358
chr1 20122410 20122416 LEF1 TRANSFAC yes 20126438 4022 27218359
chr1 20122410 20122416 SOX10 JASPAR yes 20126438 4022 27218360
chr1 20122410 20122425 FOXP1 JASPAR yes 20126438 4013 27218361
chr1 20122411 20122420 SRY JASPAR yes 20126438 4018 27218362
chr1 20122411 20122422 FOXP2 JASPAR yes 20126438 4016 27218363
chr1 20122411 20122423 FOXC2 JASPAR yes 20126438 4015 27218364
chr1 20122412 20122423 FOXC1 JASPAR yes 20126438 4015 27218365
chr1 20122413 20122424 FOXA1 JASPAR yes 20126438 4014 27218366
chr1 20122414 20122435 IRF1 JASPAR yes 20126438 4003 27218367
chr1 20122415 20122436 ZNF263 JASPAR yes 20126438 4002 27218368
chr1 20122416 20122431 PRDM1 JASPAR yes 20126438 4007 27218369
chr1 20122425 20122446 ZNF263 JASPAR yes 20126438 3992 27218370
SNPs associated with TMCO4[ENSG00000162542.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 20132044 rs140467644 G A 5606 Esophagus 0.0117107 134959
chr1 20132044 rs140467644 G A 5606 Esophagus 5.47981e-05 134959
chr1 20136951 rs74057044 C T 10513 Esophagus 6.54643e-07 135030
chr1 20131972 rs12562996 A G 5534 Heart 0.0975688 134955
chr1 20126561 rs6692164 G C 123 Heart 0.0432339 134931
chr1 20131972 rs12562996 A G 5534 Breast 0.00730494 134955
chr1 19832163 rs115738687 G A 176543 Uterus 0.266145 132638
chr1 20902803 rs113618414 C T 776365 Thyroid 0.254597 139345
chr1 20129289 rs6701368 T C 2851 Stomach 0.103317 134947
chr1 20194702 rs6670226 T A 68264 Adrenal 0.0112812 135620
Details of TMCO4[ENSG00000162542.9]
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Genomic Location chr1:20008706-20126438[-]
TSS 20126438
Gene Name TMCO4
Ensembl ID ENSG00000162542.9
ENTREZID 255104
Uniprot
Q6ZSC6
Q5TGY1
Protein Name
isoform CRA_a
isoform CRA_b
isoform CRA_d
Transmembrane and coiled-coil domain-containing protein 4
Transmembrane and coiled-coil domains 4
Transmembrane and coiled-coil domains 4
Transmembrane and coiled-coil domains 4
Expression levels of TMCO4[ENSG00000162542.9]
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