EnhancerDB
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Enhancers that regulate CLDN1[ENSG00000163347.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 189940325 189945185 enh77172 190040264 95079
Muscle (A673) Pancreas (Panc1) Brain (SK-N-MC)
chr3 189945598 189959315 enh21217 190040264 80949
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Muscle (A673) Placenta Peripheral Blood (MM.1S) Pancreas (Panc1) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Epithelial (MCF-7)
chr3 189967965 189972175 enh77173 190040264 68089
Muscle (A673) Brain (SK-N-MC)
chr3 189973985 189980455 enh71044 190040264 59809
Liver (HepG2) Brain (SK-N-MC) Muscle (A673) Uterus Neural Stem Cells (H9)
chr3 189980909 189992755 enh21218 190040264 47509
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Astrocyte Placenta Lung (PC-9) Uterus Epithelial (MCF-7)
chr3 189997165 190001355 enh88807 190040264 38909
Pancreas Spleen Uterus Brain (SK-N-MC)
chr3 190012685 190016835 enh82913 190040264 23429
Prostate (PC-3)
chr3 190017485 190022636 enh77174 190040264 17628
Muscle (A673) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1)
chr3 190041292 190041577 vista43633 190040264 1028
VISTA
chr3 190046705 190050955 enh54540 190040264 6441
Liver (HepG2) Large Intestine
chr3 190052302 190060299 enh21219 190040264 12038
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Muscle (A673) Placenta Lung (PC-9)
chr3 190060801 190067455 enh21220 190040264 20537
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Lung (A549) Muscle (A673) Placenta Thyroid Pancreas (Panc1) Uterus Stomach
chr3 190062904 190063381 vista43634 190040264 22640
VISTA
chr3 190070645 190086175 enh21221 190040264 30381
Brain (SK-N-MC) Large Intestine Placenta Uterus Lung (PC-9) Neural Stem Cells (H9)
chr3 190087065 190104935 enh21222 190040264 46801
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Lung (A549) Muscle (A673) Placenta Uterus Lung (PC-9) Neural Stem Cells (H9)
chr3 190104242 190104447 vista43635 190040264 63978
VISTA
chr3 190139954 190144656 enh100136 190040264 99690
Pancreas (Panc1) Uterus Brain (SK-N-MC) Lung (PC-9)
Transcript facotrs that regulate CLDN1[ENSG00000163347.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 190041292 190041303 RUNX1 JASPAR yes 190040264 1028 71107719
chr3 190041293 190041303 RUNX3 JASPAR yes 190040264 1029 71107720
chr3 190041294 190041303 RUNX2 JASPAR yes 190040264 1030 71107721
chr3 190041309 190041314 MYB TRANSFAC yes 190040264 1045 71107722
chr3 190041318 190041328 NFATC3 JASPAR yes 190040264 1054 71107723
chr3 190041319 190041326 NFATC2 JASPAR yes 190040264 1055 71107724
chr3 190041327 190041347 RREB1 JASPAR yes 190040264 1063 71107725
chr3 190041353 190041358 SP1 TRANSFAC yes 190040264 1089 71107726
chr3 190041354 190041364 SP1 JASPAR yes 190040264 1090 71107727
chr3 190041354 190041364 ZNF740 JASPAR yes 190040264 1090 71107728
chr3 190041356 190041362 MAZ TRANSFAC yes 190040264 1092 71107729
chr3 190041357 190041367 MZF1 JASPAR yes 190040264 1093 71107730
chr3 190041361 190041366 ETS2 TRANSFAC yes 190040264 1097 71107731
chr3 190041376 190041391 FOXP1 JASPAR yes 190040264 1112 71107732
chr3 190041378 190041393 FOXP1 JASPAR yes 190040264 1114 71107733
chr3 190041382 190041396 SPI1 JASPAR yes 190040264 1118 71107734
chr3 190041394 190041405 STAT3 JASPAR yes 190040264 1130 71107735
chr3 190041405 190041419 FOXF2 JASPAR yes 190040264 1141 71107736
chr3 190041407 190041421 POU1F1 JASPAR yes 190040264 1143 71107737
chr3 190041408 190041419 FOXP2 JASPAR yes 190040264 1144 71107738
chr3 190041408 190041420 FOXI1 JASPAR yes 190040264 1144 71107739
chr3 190041408 190041420 POU3F1 JASPAR yes 190040264 1144 71107740
chr3 190041408 190041420 POU3F2 JASPAR yes 190040264 1144 71107741
chr3 190041408 190041421 POU3F3 JASPAR yes 190040264 1144 71107742
chr3 190041409 190041421 POU2F1 JASPAR yes 190040264 1145 71107743
chr3 190041410 190041418 FOXG1 JASPAR yes 190040264 1146 71107744
chr3 190041411 190041419 FOXL1 JASPAR yes 190040264 1147 71107745
chr3 190041411 190041422 PROP1 JASPAR yes 190040264 1147 71107746
chr3 190041423 190041428 GATA2 JASPAR yes 190040264 1159 71107747
chr3 190041445 190041461 RFX5 JASPAR yes 190040264 1181 71107748
chr3 190041446 190041465 RFX2 JASPAR yes 190040264 1182 71107749
chr3 190041448 190041463 RFX5 JASPAR yes 190040264 1184 71107750
chr3 190041474 190041489 PRDM1 JASPAR yes 190040264 1210 71107751
chr3 190041478 190041483 ETS2 TRANSFAC yes 190040264 1214 71107752
chr3 190041498 190041508 TBX21 JASPAR yes 190040264 1234 71107753
chr3 190041498 190041509 TBX20 JASPAR yes 190040264 1234 71107754
chr3 190041499 190041507 TBX15 JASPAR yes 190040264 1235 71107755
chr3 190041500 190041505 SP1 TRANSFAC yes 190040264 1236 71107756
chr3 190041508 190041523 HNF4G JASPAR yes 190040264 1244 71107757
chr3 190041509 190041514 ETS2 TRANSFAC yes 190040264 1245 71107758
chr3 190041537 190041541 YY1 TRANSFAC yes 190040264 1273 71107759
chr3 190041541 190041551 FIGLA JASPAR yes 190040264 1277 71107760
chr3 190041543 190041548 USF2 TRANSFAC yes 190040264 1279 71107761
chr3 190041552 190041568 ZNF143 JASPAR yes 190040264 1288 71107762
chr3 190041560 190041575 LEF1 JASPAR yes 190040264 1296 71107763
chr3 190041561 190041575 TCF7L2 JASPAR yes 190040264 1297 71107764
SNPs associated with CLDN1[ENSG00000163347.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 189767199 rs1403416 C T 256291 Esophagus 0.336517 7287292
chr3 189395680 rs13097576 A G 627810 Heart 0.32254 7284080
chr3 190206909 rs76821364 C T 166645 Heart 0.240605 7291419
chr3 190419541 rs10513860 G A 379277 Pancreas 0.157986 7292884
chr3 189954280 rs493186 A C 69210 Spleen 0.0567903 7289454
chr3 189441242 rs11711203 C T 582248 Uterus 0.475229 7284490
chr3 190066414 rs76163529 C A,T 26150 Thyroid 0.0880025 7290520
Details of CLDN1[ENSG00000163347.5]
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Genomic Location chr3:190023490-190040264[-]
TSS 190040264
Gene Name CLDN1
Ensembl ID ENSG00000163347.5
ENTREZID 9076
Uniprot
O95832
A5JSJ9
Protein Name
Claudin
Claudin-1
Expression levels of CLDN1[ENSG00000163347.5]
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