EnhancerDB
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Enhancers that regulate RPL39L[ENSG00000163923.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 186792800 186808795 enh7754 186898696 89901
Liver (HepG2) Cervix (HeLa-S3) Blood (OCI-LY7) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422)
chr3 186813825 186822275 enh7755 186898696 76421
Liver (HepG2) Large Intestine Blood (T-cell) Astrocyte Bone (Osteoblast) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas Muscle (Myotube) Uterus Thymus Stomach
chr3 186819692 186820086 vista43493 186898696 78610
VISTA
chr3 186826065 186833235 enh77161 186898696 65461
Muscle (A673) Peripheral Blood (MM.1S)
chr3 186841205 186845695 enh7756 186898696 53001
Peripheral Blood (MM.1S) Blood (Karpas-422)
chr3 186845925 186850854 enh48782 186898696 47842
Skin (Keratinocyte) Prostate (RWPE1) Blood (T-cell) Esophagus Blood (OCI-LY7) Peripheral Blood (MM.1S) Uterus Thymus Epithelial (MCF-7)
chr3 186848587 186848780 vista43494 186898696 49916
VISTA
chr3 186866485 186872095 enh105514 186898696 26601
Peripheral Blood (MM.1S)
chr3 186880385 186890475 enh36228 186898696 8221
Prostate (RWPE1) Astrocyte Muscle (A673) Lung (PC-9) Neural Stem Cells (H9)
chr3 186884514 186884521 vista43495 186898696 14175
VISTA
chr3 186892076 186892095 vista43496 186898696 6601
VISTA
chr3 186899765 186909055 enh7757 186898696 1069
Peripheral Blood (MM.1S) Blood (Karpas-422)
chr3 186901070 186901277 vista43497 186898696 2374
VISTA
chr3 186903601 186903921 vista43498 186898696 4905
VISTA
chr3 186923906 186932955 enh36229 186898696 25210
Prostate (PC-3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Stomach Thyroid Uterus Embryonic Stem Cell Line (H1-hESC) Lung (PC-9) Breast Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
chr3 186926447 186926523 vista43499 186898696 27751
VISTA
chr3 186943245 186947395 enh111065 186898696 44549
Cervix (HeLa-S3)
chr3 186979185 186986555 enh65797 186898696 80489
Stomach Cervix (HeLa-S3) Heart
chr3 186989165 186993315 enh93247 186898696 90469
Liver (HepG2)
chr3 186997085 187001455 enh21183 186898696 98389
Placenta
Transcript facotrs that regulate RPL39L[ENSG00000163923.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 186901075 186901080 SP1 TRANSFAC yes 186898696 2379 8385470
chr3 186901075 186901080 SP1 TRANSFAC yes 186898696 2379 71101332
chr3 186901079 186901084 GATA2 JASPAR yes 186898696 2383 8385471
chr3 186901079 186901084 GATA2 JASPAR yes 186898696 2383 71101333
chr3 186901090 186901104 EBF1 JASPAR yes 186898696 2394 8385472
chr3 186901090 186901104 EBF1 JASPAR yes 186898696 2394 71101334
chr3 186901091 186901102 EBF1 JASPAR yes 186898696 2395 8385473
chr3 186901091 186901102 EBF1 JASPAR yes 186898696 2395 71101335
chr3 186901092 186901098 MZF1 JASPAR yes 186898696 2396 8385474
chr3 186901092 186901098 MZF1 JASPAR yes 186898696 2396 71101336
chr3 186901113 186901128 SCRT1 JASPAR yes 186898696 2417 8385475
chr3 186901113 186901128 SCRT1 JASPAR yes 186898696 2417 71101337
chr3 186901130 186901140 NHLH1 JASPAR yes 186898696 2434 8385476
chr3 186901130 186901140 NHLH1 JASPAR yes 186898696 2434 71101338
chr3 186901161 186901170 TFAP2A JASPAR yes 186898696 2465 8385477
chr3 186901161 186901170 TFAP2A JASPAR yes 186898696 2465 71101339
chr3 186901164 186901184 TP53 JASPAR yes 186898696 2468 8385478
chr3 186901164 186901184 TP53 JASPAR yes 186898696 2468 71101340
chr3 186901166 186901186 TP63 JASPAR yes 186898696 2470 8385479
chr3 186901166 186901186 TP63 JASPAR yes 186898696 2470 71101341
chr3 186901167 186901185 TP53 JASPAR yes 186898696 2471 8385480
chr3 186901167 186901185 TP73 JASPAR yes 186898696 2471 8385481
chr3 186901167 186901185 TP53 JASPAR yes 186898696 2471 71101342
chr3 186901167 186901185 TP73 JASPAR yes 186898696 2471 71101343
chr3 186901168 186901183 TP53 JASPAR yes 186898696 2472 8385482
chr3 186901168 186901183 TP53 JASPAR yes 186898696 2472 71101344
chr3 186901168 186901188 TP53 JASPAR yes 186898696 2472 8385483
chr3 186901168 186901188 TP53 JASPAR yes 186898696 2472 71101345
chr3 186901169 186901184 TP53 JASPAR yes 186898696 2473 8385484
chr3 186901169 186901184 TP53 JASPAR yes 186898696 2473 71101346
chr3 186901173 186901182 HIC2 JASPAR yes 186898696 2477 8385485
chr3 186901173 186901182 HIC2 JASPAR yes 186898696 2477 71101347
chr3 186901176 186901180 LFA1 TRANSFAC yes 186898696 2480 8385486
chr3 186901176 186901180 LFA1 TRANSFAC yes 186898696 2480 71101348
chr3 186901180 186901189 HIC2 JASPAR yes 186898696 2484 8385487
chr3 186901180 186901189 HIC2 JASPAR yes 186898696 2484 71101349
chr3 186901211 186901224 ELF1 JASPAR yes 186898696 2515 8385488
chr3 186901211 186901224 ELF1 JASPAR yes 186898696 2515 71101350
chr3 186901214 186901224 ETV6 JASPAR yes 186898696 2518 8385489
chr3 186901214 186901224 ETV6 JASPAR yes 186898696 2518 71101351
chr3 186901214 186901225 FLI1 JASPAR yes 186898696 2518 8385490
chr3 186901214 186901225 FLI1 JASPAR yes 186898696 2518 71101352
chr3 186901215 186901223 EHF JASPAR yes 186898696 2519 8385491
chr3 186901215 186901223 EHF JASPAR yes 186898696 2519 71101353
chr3 186901216 186901223 SPI1 JASPAR yes 186898696 2520 8385492
chr3 186901216 186901223 SPI1 JASPAR yes 186898696 2520 71101354
chr3 186901216 186901236 RREB1 JASPAR yes 186898696 2520 8385493
chr3 186901216 186901236 RREB1 JASPAR yes 186898696 2520 71101355
chr3 186901223 186901239 ZNF143 JASPAR yes 186898696 2527 8385494
chr3 186901223 186901239 ZNF143 JASPAR yes 186898696 2527 71101356
chr3 186901225 186901231 ZNF354C JASPAR yes 186898696 2529 8385495
chr3 186901225 186901231 ZNF354C JASPAR yes 186898696 2529 71101357
chr3 186901226 186901234 RHOXF1 JASPAR yes 186898696 2530 8385496
chr3 186901226 186901234 RHOXF1 JASPAR yes 186898696 2530 71101358
chr3 186903628 186903633 GATA2 JASPAR yes 186898696 4932 8385497
chr3 186903628 186903633 GATA2 JASPAR yes 186898696 4932 71101359
chr3 186903652 186903666 JUN JASPAR yes 186898696 4956 8385498
chr3 186903652 186903666 JUN JASPAR yes 186898696 4956 71101360
chr3 186903656 186903667 NFE2 JASPAR yes 186898696 4960 8385499
chr3 186903656 186903667 NFE2 JASPAR yes 186898696 4960 71101361
chr3 186903657 186903666 JDP2 JASPAR yes 186898696 4961 8385500
chr3 186903657 186903666 JDP2 JASPAR yes 186898696 4961 71101362
chr3 186903663 186903667 YY1 TRANSFAC yes 186898696 4967 8385501
chr3 186903663 186903667 YY1 TRANSFAC yes 186898696 4967 71101363
chr3 186903672 186903693 IRF1 JASPAR yes 186898696 4976 8385502
chr3 186903672 186903693 IRF1 JASPAR yes 186898696 4976 71101364
chr3 186903677 186903698 ZNF263 JASPAR yes 186898696 4981 8385503
chr3 186903677 186903698 ZNF263 JASPAR yes 186898696 4981 71101365
chr3 186903684 186903698 TCF7L2 JASPAR yes 186898696 4988 8385504
chr3 186903684 186903698 TCF7L2 JASPAR yes 186898696 4988 71101366
chr3 186903684 186903699 LEF1 JASPAR yes 186898696 4988 8385505
chr3 186903684 186903699 LEF1 JASPAR yes 186898696 4988 71101367
chr3 186903689 186903695 SOX10 JASPAR yes 186898696 4993 8385506
chr3 186903689 186903695 SOX10 JASPAR yes 186898696 4993 71101368
chr3 186903693 186903699 HiNF-A TRANSFAC yes 186898696 4997 8385507
chr3 186903693 186903699 HiNF-A TRANSFAC yes 186898696 4997 71101369
SNPs associated with RPL39L[ENSG00000163923.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 186464107 rs6796803 T C 374629 Heart 0.0596915 7261787
chr3 187019164 rs850304 C G 120468 Spleen 0.446616 7266581
chr3 186730302 rs112277894 A T 108434 Thyroid 0.0678247 7264342
chr3 186997139 rs1717652 T C 98443 Liver 0.401381 7266364
chr3 186184328 rs6771063 G A 654408 Lung 0.290979 7260327
Details of RPL39L[ENSG00000163923.5]
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Genomic Location chr3:186838736-186898696[-]
TSS 186898696
Gene Name RPL39L
Ensembl ID ENSG00000163923.5
ENTREZID 116832
Uniprot
Q96EH5
Protein Name
60S ribosomal protein L39-like
Expression levels of RPL39L[ENSG00000163923.5]
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