EnhancerDB
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Enhancers that regulate RPUSD4[ENSG00000165526.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr11 125968850 126000095 enh2086 126081587 81492
Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr11 125983623 125983738 vista11997 126081587 97849
VISTA
chr11 125985079 125985242 vista11998 126081587 96345
VISTA
chr11 125985923 125986168 vista11999 126081587 95419
VISTA
chr11 125992920 125993185 vista12000 126081587 88402
VISTA
chr11 125997963 125998111 vista12001 126081587 83476
VISTA
chr11 126000108 126013568 enh14372 126081587 68019
Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Lung (PC-9) Esophagus Stomach Muscle (A673) Placenta Thyroid Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Heart
chr11 126001132 126001515 vista12002 126081587 80072
VISTA
chr11 126002239 126002432 vista12003 126081587 79155
VISTA
chr11 126010526 126010866 vista12004 126081587 70721
VISTA
chr11 126014745 126039693 enh2087 126081587 41894
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Esophagus Muscle (A673) Thyroid Blood (Karpas-422) Muscle (Myoblast) Muscle (Myotube) Uterus
chr11 126029421 126029682 vista12005 126081587 51905
VISTA
chr11 126032961 126033284 vista12006 126081587 48303
VISTA
chr11 126040465 126047555 enh74936 126081587 34032
Brain (SK-N-MC) Muscle (A673) Peripheral Blood (MM.1S) Spleen Uterus
chr11 126053225 126069818 enh2088 126081587 11769
Liver (HepG2) Prostate (RWPE1) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myotube) Uterus Stomach
chr11 126084365 126084425 vista12007 126081587 2778
VISTA
chr11 126090916 126095280 enh89644 126081587 9329
Prostate (RWPE1)
chr11 126114645 126118795 enh74937 126081587 33058
Muscle (A673)
chr11 126150285 126155275 enh2089 126081587 68698
Blood (Karpas-422)
chr11 126175725 126175882 vista12008 126081587 94138
VISTA
chr11 126175745 126220415 enh14373 126081587 94158
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Lung Muscle (A673) Heart
chr11 126180283 126180636 vista12009 126081587 98696
VISTA
chr11 126181564 126181596 vista12010 126081587 99977
VISTA
Transcript facotrs that regulate RPUSD4[ENSG00000165526.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr11 126083817 126084661 ZNF274 GTRD no Liver (HepG2) 126081587 2230 108005871
chr11 126083858 126084448 ZNF274 GTRD no Blood (GM12878) 126081587 2271 108005872
chr11 126084193 126084557 ZNF274 GTRD no Blood (GM12878) 126081587 2606 108005873
chr11 126084235 126084682 ZNF274 GTRD no Liver (HepG2) 126081587 2648 108005874
chr11 126084373 126084394 IRF1 JASPAR yes 126081587 2786 114151867
chr11 126084374 126084380 TCF4 TRANSFAC yes 126081587 2787 114151868
chr11 126084374 126084395 IRF1 JASPAR yes 126081587 2787 114151869
chr11 126084375 126084390 STAT2 JASPAR yes 126081587 2788 114151870
chr11 126084376 126084390 STAT1 JASPAR yes 126081587 2789 114151871
chr11 126084377 126084392 IRF9 JASPAR yes 126081587 2790 114151872
chr11 126084379 126084400 IRF1 JASPAR yes 126081587 2792 114151873
chr11 126084380 126084395 FOXP1 JASPAR yes 126081587 2793 114151874
chr11 126084380 126084401 IRF1 JASPAR yes 126081587 2793 114151875
chr11 126084381 126084392 FOXP2 JASPAR yes 126081587 2794 114151876
chr11 126084381 126084396 STAT2 JASPAR yes 126081587 2794 114151877
chr11 126084381 126084401 RREB1 JASPAR yes 126081587 2794 114151878
chr11 126084381 126084402 IRF1 JASPAR yes 126081587 2794 114151879
chr11 126084382 126084397 FOXP1 JASPAR yes 126081587 2795 114151880
chr11 126084384 126084399 FOXP1 JASPAR yes 126081587 2797 114151881
chr11 126084385 126084400 FOXP1 JASPAR yes 126081587 2798 114151882
chr11 126084386 126084401 FOXP1 JASPAR yes 126081587 2799 114151883
chr11 126084386 126084406 RREB1 JASPAR yes 126081587 2799 114151884
chr11 126084386 126084407 IRF1 JASPAR yes 126081587 2799 114151885
chr11 126084387 126084408 IRF1 JASPAR yes 126081587 2800 114151886
chr11 126084388 126084403 FOXP1 JASPAR yes 126081587 2801 114151887
chr11 126084392 126084412 RREB1 JASPAR yes 126081587 2805 114151888
chr11 126084392 126084413 IRF1 JASPAR yes 126081587 2805 114151889
chr11 126084393 126084399 TCF4 TRANSFAC yes 126081587 2806 114151890
chr11 126084393 126084408 FOXP1 JASPAR yes 126081587 2806 114151891
chr11 126084393 126084414 IRF1 JASPAR yes 126081587 2806 114151892
chr11 126084394 126084405 FOXP2 JASPAR yes 126081587 2807 114151893
chr11 126084394 126084406 FOXC2 JASPAR yes 126081587 2807 114151894
chr11 126084395 126084410 FOXP1 JASPAR yes 126081587 2808 114151895
chr11 126084397 126084417 RREB1 JASPAR yes 126081587 2810 114151896
chr11 126084397 126084418 IRF1 JASPAR yes 126081587 2810 114151897
chr11 126084398 126084419 IRF1 JASPAR yes 126081587 2811 114151898
chr11 126084399 126084414 FOXP1 JASPAR yes 126081587 2812 114151899
chr11 126084403 126084424 IRF1 JASPAR yes 126081587 2816 114151900
chr11 126084404 126084410 TCF4 TRANSFAC yes 126081587 2817 114151901
chr11 126084404 126084419 FOXP1 JASPAR yes 126081587 2817 114151902
chr11 126084405 126084416 FOXP2 JASPAR yes 126081587 2818 114151903
chr11 126084405 126084417 FOXC2 JASPAR yes 126081587 2818 114151904
chr11 126084405 126084420 STAT2 JASPAR yes 126081587 2818 114151905
chr11 126084406 126084421 FOXP1 JASPAR yes 126081587 2819 114151906
chr11 126084408 126084423 FOXP1 JASPAR yes 126081587 2821 114151907
chr11 126084409 126084424 FOXP1 JASPAR yes 126081587 2822 114151908
SNPs associated with RPUSD4[ENSG00000165526.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr11 125257848 rs11220043 G A 814145 Esophagus 0.199758 2341168
chr11 126059212 rs601702 C G 12781 Esophagus 0.00214925 2344903
chr11 126920647 rs668605 G A 839060 Esophagus 0.0770638 2350484
chr11 127077895 rs11220826 C A 996308 Heart 0.162908 2351181
chr11 126979473 rs75663508 T C,G 897886 Heart 0.150126 2350817
chr11 126059212 rs601702 C G 12781 Pancreas 0.0179289 2344903
chr11 126935761 rs75788263 C T 854174 Liver 0.462047 2350600
chr11 126054854 rs12270993 C T 17139 Lung 0.23201 2344814
chr11 126364135 rs1892999 T C 282548 Stomach 0.00201033 2347324
Details of RPUSD4[ENSG00000165526.4]
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Genomic Location chr11:126071993-126081587[-]
TSS 126081587
Gene Name RPUSD4
Ensembl ID ENSG00000165526.4
ENTREZID 84881
Uniprot
B4DUN4
Q96CM3
Protein Name
isoform CRA_a
RNA pseudouridylate synthase domain containing 4
RNA pseudouridylate synthase domain-containing protein 4
Expression levels of RPUSD4[ENSG00000165526.4]
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