EnhancerDB
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Enhancers that regulate CTD-3088G3.8[ENSG00000188897.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr16 11544265 11548955 enh99313 11617444 68489
Uterus Brain (SK-N-MC)
chr16 11585463 11594633 enh16536 11617444 22811
Liver Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Spleen Prostate (RWPE1) Muscle (A673) Heart
chr16 11590987 11591512 vista21870 11617444 25932
VISTA
chr16 11591931 11591962 vista21871 11617444 25482
VISTA
chr16 11596265 11602395 enh3888 11617444 15049
Thyroid Prostate (PC-3) Blood (Karpas-422) Epithelial (MCF-7)
chr16 11618570 11618665 vista21872 11617444 1126
VISTA
chr16 11625505 11641575 enh16537 11617444 8061
Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung (A549) Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Spleen Uterus Epithelial (MCF-7)
chr16 11633611 11633797 vista21873 11617444 16167
VISTA
chr16 11642845 11646995 enh109700 11617444 25401
Stomach
chr16 11644813 11645143 vista21874 11617444 27369
VISTA
chr16 11649725 11660415 enh69044 11617444 32281
Liver (HepG2) Neural Stem Cells (H9) Blood (T-cell) Stomach
chr16 11654480 11655021 vista21875 11617444 37036
VISTA
chr16 11656662 11657039 vista21876 11617444 39218
VISTA
chr16 11662178 11662507 vista21877 11617444 44734
VISTA
chr16 11662785 11668415 enh47925 11617444 45341
Uterus Thymus Blood (T-cell) Stomach
chr16 11666045 11666804 vista21878 11617444 48601
VISTA
chr16 11670817 11671132 vista21879 11617444 53373
VISTA
chr16 11673665 11677835 enh92637 11617444 56221
Liver (HepG2) Blood (T-cell) Stomach
chr16 11677764 11678427 vista21880 11617444 60320
VISTA
chr16 11686245 11691295 enh16538 11617444 68801
Stomach Placenta Uterus Lung (PC-9)
chr16 11691003 11692063 vista21881 11617444 73559
VISTA
chr16 11692306 11692793 vista21882 11617444 74862
VISTA
chr16 11694149 11728755 enh16539 11617444 76705
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Heart
chr16 11702109 11702428 vista21883 11617444 84665
VISTA
chr16 11705983 11706695 vista21884 11617444 88539
VISTA
chr16 11707277 11708060 vista21885 11617444 89833
VISTA
chr16 11709603 11709900 vista21886 11617444 92159
VISTA
chr16 11713232 11713400 vista21887 11617444 95788
VISTA
chr16 11715871 11716050 vista21888 11617444 98427
VISTA
Transcript facotrs that regulate CTD-3088G3.8[ENSG00000188897.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr16 11617393 11620399 ZNF143 GTRD no Epithelial (MCF-7) 11617444 51 108181819
chr16 11617613 11618818 ZNF143 GTRD no Epithelial (MCF-7) 11617444 169 108181820
chr16 11617774 11618793 ZNF143 GTRD no Epithelial (MCF-7) 11617444 330 108181821
chr16 11617777 11618736 ZNF143 GTRD no Epithelial (MCF-7) 11617444 333 108181822
chr16 11617823 11618781 ZNF143 GTRD no Epithelial (MCF-7) 11617444 379 108181823
chr16 11617833 11618651 ZNF143 GTRD no Epithelial (MCF-7) 11617444 389 108181824
chr16 11617959 11618571 ZNF143 GTRD no Epithelial (MCF-7) 11617444 515 108181825
chr16 11618186 11618616 CTCF UCSC Txn Factor no Conserved 11617444 742 108181826
chr16 11618246 11618801 ZNF143 GTRD no Epithelial (MCF-7) 11617444 802 108181827
chr16 11618288 11618572 ZNF274 GTRD no Bone Marrow (K562) 11617444 844 108181828
chr16 11618360 11618826 TCF7L2 GTRD no Colon (HCT116) 11617444 916 108181829
chr16 11618421 11619055 TCF7L2 GTRD no Colon (HCT116) 11617444 977 108181830
chr16 11618462 11619041 TCF7L2 GTRD no Colon (HCT116) 11617444 1018 108181831
chr16 11618511 11619048 TCF7L2 GTRD no Colon (HCT116) 11617444 1067 108181832
chr16 11618513 11619025 TCF7L2 GTRD no Colon (HCT116) 11617444 1069 108181833
chr16 11618580 11618591 NFKB1 JASPAR yes 11617444 1136 49341817
chr16 11618581 11618586 ETS2 TRANSFAC yes 11617444 1137 49341818
chr16 11618591 11618612 ZNF263 JASPAR yes 11617444 1147 49341819
chr16 11618592 11618613 ZNF263 JASPAR yes 11617444 1148 49341820
chr16 11618594 11618600 SP1 TRANSFAC yes 11617444 1150 49341821
chr16 11618594 11618604 SP1 JASPAR yes 11617444 1150 49341822
chr16 11618595 11618606 E2F6 JASPAR yes 11617444 1151 49341823
chr16 11618599 11618610 E2F6 JASPAR yes 11617444 1155 49341824
chr16 11618599 11618620 ZNF263 JASPAR yes 11617444 1155 49341825
chr16 11618603 11618614 E2F6 JASPAR yes 11617444 1159 49341826
chr16 11618606 11618618 TFAP2A JASPAR yes 11617444 1162 49341827
chr16 11618617 11618627 SP1 JASPAR yes 11617444 1173 49341828
chr16 11618629 11618648 CTCF JASPAR yes 11617444 1185 49341829
SNPs associated with CTD-3088G3.8[ENSG00000188897.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr16 11642242 rs7102 T C 24798 Esophagus 0.00516668 4319184
chr16 12234294 rs115701963 G C 616850 Heart 0.364536 4324380
chr16 10938102 rs75785526 G A 515600 Heart 0.0571117 4311772
chr16 11429354 rs56020634 C A 24348 Spleen 0.0829298 4317160
chr16 10722276 rs117009158 G A 731426 Ovary 0.404899 4309481
chr16 11464600 rs28660409 T G 0 Liver 0.324748 4317755
chr16 11490151 rs4353491 C T 0 Stomach 0.262497 4318045
Details of CTD-3088G3.8[ENSG00000188897.4]
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Genomic Location chr16:11453702-11617444[-]
TSS 11617444
Gene Name CTD-3088G3.8
Ensembl ID ENSG00000188897.4
ENTREZID
Uniprot
Protein Name
Expression levels of CTD-3088G3.8[ENSG00000188897.4]
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