EnhancerDB
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Enhancers that regulate SMIM5[ENSG00000204323.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 73525565 73534090 enh107725 73629514 95424
Cervix (HeLa-S3) Blood (T-cell)
chr17 73531533 73531826 vista25983 73629514 97688
VISTA
chr17 73541846 73552035 enh17378 73629514 77479
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Esophagus Stomach Placenta Colon (HCT116) Thyroid Pancreas Epithelial (MCF-7)
chr17 73545364 73545732 vista25984 73629514 83782
VISTA
chr17 73546030 73546166 vista25985 73629514 83348
VISTA
chr17 73571945 73577255 enh52591 73629514 52259
Liver (HepG2) Cervix (HeLa-S3) Large Intestine Pancreas Stomach
chr17 73599541 73603669 enh86270 73629514 25845
Colon (HCT116)
chr17 73631575 73631992 vista25986 73629514 2061
VISTA
chr17 73641652 73641951 vista25987 73629514 12138
VISTA
chr17 73668800 73695855 enh17379 73629514 39286
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr17 73684314 73684419 vista25988 73629514 54800
VISTA
chr17 73685500 73685825 vista25989 73629514 55986
VISTA
chr17 73689850 73690283 vista25990 73629514 60336
VISTA
chr17 73691946 73692277 vista25991 73629514 62432
VISTA
chr17 73696530 73696897 vista25992 73629514 67016
VISTA
chr17 73718198 73718514 vista25993 73629514 88684
VISTA
chr17 73719261 73719909 vista25994 73629514 89747
VISTA
Transcript facotrs that regulate SMIM5[ENSG00000204323.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 73630146 73631737 TCF7L2 GTRD no Colon (HCT116) 73629514 632 108294425
chr17 73631072 73631690 TCF7L2 GTRD no Colon (HCT116) 73629514 1558 108294426
chr17 73631191 73631678 ZNF143 GTRD no Epithelial (MCF-7) 73629514 1677 108294427
chr17 73631335 73632565 POLR2A UCSC Txn Factor no Conserved 73629514 1821 108294428
chr17 73631579 73631590 E2F4 JASPAR yes 73629514 2065 21296596
chr17 73631579 73631590 E2F6 JASPAR yes 73629514 2065 21296597
chr17 73631580 73631591 E2F1 JASPAR yes 73629514 2066 21296598
chr17 73631584 73631589 SP1 TRANSFAC yes 73629514 2070 21296599
chr17 73631622 73631636 PAX6 JASPAR yes 73629514 2108 21296600
chr17 73631630 73631645 PRDM1 JASPAR yes 73629514 2116 21296601
chr17 73631630 73631645 STAT2 JASPAR yes 73629514 2116 21296602
chr17 73631638 73631648 ETV3 JASPAR yes 73629514 2124 21296603
chr17 73631644 73631649 MYC TRANSFAC yes 73629514 2130 21296604
chr17 73631649 73631670 ZNF263 JASPAR yes 73629514 2135 21296605
chr17 73631656 73631660 LFA1 TRANSFAC yes 73629514 2142 21296606
chr17 73631664 73631677 NFKB1 JASPAR yes 73629514 2150 21296607
chr17 73631664 73631677 NFKB2 JASPAR yes 73629514 2150 21296608
chr17 73631678 73631692 TLX1 JASPAR yes 73629514 2164 21296609
chr17 73631680 73632117 GATA1 UCSC Txn Factor no Conserved 73629514 2166 108294429
chr17 73631697 73631710 NFKB1 JASPAR yes 73629514 2183 21296610
chr17 73631697 73631710 NFKB2 JASPAR yes 73629514 2183 21296611
chr17 73631698 73631708 NFKB1 JASPAR yes 73629514 2184 21296612
chr17 73631698 73631708 RELA JASPAR yes 73629514 2184 21296613
chr17 73631698 73631709 NFKB1 JASPAR yes 73629514 2184 21296614
chr17 73631698 73631711 NFKB1 JASPAR yes 73629514 2184 21296615
chr17 73631699 73631703 LFA1 TRANSFAC yes 73629514 2185 21296616
chr17 73631699 73631709 NFKB1 JASPAR yes 73629514 2185 21296617
chr17 73631704 73631716 TFAP2A JASPAR yes 73629514 2190 21296618
chr17 73631706 73631715 TFAP2A JASPAR yes 73629514 2192 21296619
chr17 73631791 73631800 HIC2 JASPAR yes 73629514 2277 21296620
chr17 73631798 73631813 NR2C2 JASPAR yes 73629514 2284 21296621
chr17 73631799 73631813 RXRB JASPAR yes 73629514 2285 21296622
chr17 73631799 73631813 RXRG JASPAR yes 73629514 2285 21296623
chr17 73631799 73631819 PPARG JASPAR yes 73629514 2285 21296624
chr17 73631801 73631805 LFA1 TRANSFAC yes 73629514 2287 21296625
chr17 73631805 73631823 ESR1 JASPAR yes 73629514 2291 21296626
chr17 73631809 73631816 JUN TRANSFAC yes 73629514 2295 21296627
chr17 73631823 73631836 ATF4 JASPAR yes 73629514 2309 21296628
chr17 73631839 73631843 LFA1 TRANSFAC yes 73629514 2325 21296629
chr17 73631852 73631865 TFAP2A JASPAR yes 73629514 2338 21296630
chr17 73631855 73631866 EBF1 JASPAR yes 73629514 2341 21296631
chr17 73631860 73631865 SP1 TRANSFAC yes 73629514 2346 21296632
chr17 73631872 73631878 NFIC JASPAR yes 73629514 2358 21296633
chr17 73631877 73631885 TBX5 JASPAR yes 73629514 2363 21296634
chr17 73631921 73631929 EHF JASPAR yes 73629514 2407 21296635
chr17 73631964 73631970 PEA3 TRANSFAC yes 73629514 2450 21296636
chr17 73631974 73631979 ETS2 TRANSFAC yes 73629514 2460 21296637
chr17 73631975 73631990 HSF1 JASPAR yes 73629514 2461 21296638
chr17 73631976 73631989 HSF1 JASPAR yes 73629514 2462 21296639
chr17 73631976 73631989 HSF2 JASPAR yes 73629514 2462 21296640
chr17 73631976 73631989 HSF4 JASPAR yes 73629514 2462 21296641
SNPs associated with SMIM5[ENSG00000204323.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 72820701 rs4789104 G A 808813 Esophagus 0.127548 5052404
chr17 73641714 rs820206 G A 4230 Heart 8.45937e-07 5058424
chr17 73697391 rs820233 C T 59907 Heart 0.202998 5058779
chr17 73584441 rs76124218 G C 45073 Pancreas 0.000977228 5058210
chr17 73584441 rs76124218 G C 45073 Spleen 0.00287111 5058210
chr17 74212387 rs117104101 G A 574903 Lung 0.296505 5061232
chr17 73569927 rs1671019 G A,T 59587 Stomach 0.0416196 5057933
chr17 74623865 rs78856096 G C 986381 Adrenal 0.598883 5065526
Details of SMIM5[ENSG00000204323.5]
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Genomic Location chr17:73629514-73637484[+]
TSS 73629514
Gene Name SMIM5
Ensembl ID ENSG00000204323.5
ENTREZID 643008
Uniprot
Q71RC9
Protein Name
Small integral membrane protein 5
Expression levels of SMIM5[ENSG00000204323.5]
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