EnhancerDB
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Enhancers that regulate UPF1[ENSG00000005007.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 18839785 18853535 enh52853 18942747 89212
Bone Marrow (K562) Liver (HepG2) Brain (SK-N-SH) Prostate (RWPE1) Large Intestine Ovary Muscle (A673) Pancreas Stomach
chr19 18852715 18852875 vista28945 18942747 89872
VISTA
chr19 18865648 18870252 enh76116 18942747 72495
Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Muscle (A673) Breast
chr19 18870425 18878295 enh62724 18942747 64452
Ovary Esophagus Stomach Muscle (A673) Colon (HCT116) Thyroid Pancreas Breast Uterus Epithelial (MCF-7)
chr19 18874702 18875152 vista28946 18942747 67595
VISTA
chr19 18907485 18922567 enh44634 18942747 20180
Cervix (HeLa-S3) Prostate (RWPE1) Large Intestine Esophagus Bone (Osteoblast) Uterus Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
chr19 18946205 18961474 enh17979 18942747 3458
Liver (HepG2) Brain (SK-N-SH) Large Intestine Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Blood (T-cell) Stomach
chr19 18960289 18960480 vista28947 18942747 17542
VISTA
chr19 18983423 18987515 enh44635 18942747 40676
Muscle (Myotube)
chr19 19003165 19003498 vista28948 18942747 60418
VISTA
chr19 19005223 19006062 vista28949 18942747 62476
VISTA
chr19 19024496 19028796 enh76117 18942747 81749
Pancreas Muscle (A673) Liver (HepG2) Prostate (RWPE1)
chr19 19027750 19028071 vista28950 18942747 85003
VISTA
Transcript facotrs that regulate UPF1[ENSG00000005007.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 18947629 18947643 TLX1 JASPAR yes 18942747 4882 112759512
chr19 18947629 18947647 ESR2 JASPAR yes 18942747 4882 112759513
chr19 18947630 18947647 ESR1 JASPAR yes 18942747 4883 112759514
chr19 18947633 18947654 ZNF263 JASPAR yes 18942747 4886 112759515
chr19 18947641 18947660 CTCF JASPAR yes 18942747 4894 112759516
chr19 18947696 18947711 SCRT1 JASPAR yes 18942747 4949 112759517
chr19 18947700 18947709 SNAI2 JASPAR yes 18942747 4953 112759518
chr19 18947700 18947710 FIGLA JASPAR yes 18942747 4953 112759519
chr19 18947700 18947710 ID4 JASPAR yes 18942747 4953 112759520
chr19 18947700 18947710 TCF3 JASPAR yes 18942747 4953 112759521
chr19 18947700 18947710 TCF4 JASPAR yes 18942747 4953 112759522
chr19 18947702 18947711 ZEB1 JASPAR yes 18942747 4955 112759523
chr19 18947703 18947711 TBX5 JASPAR yes 18942747 4956 112759524
chr19 18947714 18947733 PAX5 JASPAR yes 18942747 4967 112759525
chr19 18947717 18947726 HIC2 JASPAR yes 18942747 4970 112759526
chr19 18947732 18947747 MEF2A JASPAR yes 18942747 4985 112759527
chr19 18947733 18947748 MEF2C JASPAR yes 18942747 4986 112759528
chr19 18947734 18947746 MEF2A JASPAR yes 18942747 4987 112759529
chr19 18947734 18947746 MEF2D JASPAR yes 18942747 4987 112759530
chr19 18947736 18947740 YY1 TRANSFAC yes 18942747 4989 112759531
chr19 18947746 18947756 SP1 JASPAR yes 18942747 4999 112759532
SNPs associated with UPF1[ENSG00000005007.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
Details of UPF1[ENSG00000005007.8]
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Genomic Location chr19:18942747-18979045[+]
TSS 18942747
Gene Name UPF1
Ensembl ID ENSG00000005007.8
ENTREZID 5976
Uniprot
A0A024R7L5
Q92900
B3KY55
A0A024R7L8
Protein Name
Regulator of nonsense transcripts 1
UPF1
UPF1 regulator of nonsense transcripts homolog
Expression levels of UPF1[ENSG00000005007.8]
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