EnhancerDB
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Enhancers that regulate PRPH2[ENSG00000112619.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr6 42590065 42599735 enh55753 42690312 90577
Bone Marrow (K562) Ovary Large Intestine Thyroid Peripheral Blood (MM.1S)
chr6 42628711 42629075 vista51987 42690312 61237
VISTA
chr6 42658239 42662769 enh95222 42690312 27543
Muscle (Myoblast)
chr6 42666077 42672095 enh59620 42690312 18217
Skin (Keratinocyte) Peripheral Blood (MM.1S)
chr6 42676216 42684230 enh46126 42690312 6082
Muscle (Myotube) Prostate (RWPE1) Lung (PC-9)
chr6 42678244 42678442 vista51988 42690312 11870
VISTA
chr6 42688111 42688359 vista51989 42690312 1953
VISTA
chr6 42694331 42694739 vista51990 42690312 4019
VISTA
chr6 42699785 42705955 enh77878 42690312 9473
Muscle (A673) Thyroid
chr6 42706625 42713195 enh9125 42690312 16313
Muscle (A673) Brain (SK-N-SH) Blood (Karpas-422)
chr6 42722577 42726795 enh102338 42690312 32265
Embryonic Stem Cell Line (H1-hESC)
chr6 42722931 42723177 vista51991 42690312 32619
VISTA
chr6 42728265 42744755 enh9126 42690312 37953
Prostate (PC-3) Large Intestine Prostate (RWPE1) Blood (T-cell) Astrocyte Blood (OCI-LY7) Blood (GM12878) Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas Thymus
chr6 42735698 42735757 vista51992 42690312 45386
VISTA
chr6 42738530 42739530 vista51993 42690312 48218
VISTA
chr6 42739653 42739820 vista51994 42690312 49341
VISTA
chr6 42743007 42743021 vista51995 42690312 52695
VISTA
chr6 42747885 42761975 enh9127 42690312 57573
Esophagus Blood (OCI-LY7) Blood (GM12878) Stomach Muscle (A673) Colon (HCT116) Uterus Blood (Karpas-422) Neural Stem Cells (H9) Blood (T-cell) Heart
chr6 42765705 42771155 enh39000 42690312 75393
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Astrocyte Muscle (Myoblast) Uterus
chr6 42783745 42788415 enh55754 42690312 93433
Large Intestine
Transcript facotrs that regulate PRPH2[ENSG00000112619.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr6 42688130 42688144 TLX1 JASPAR yes 42690312 2168 70365780
chr6 42688155 42688167 POU2F1 JASPAR yes 42690312 2145 70365781
chr6 42688155 42688168 POU3F3 JASPAR yes 42690312 2144 70365782
chr6 42688155 42688169 POU1F1 JASPAR yes 42690312 2143 70365783
chr6 42688156 42688168 POU3F1 JASPAR yes 42690312 2144 70365784
chr6 42688156 42688168 POU3F2 JASPAR yes 42690312 2144 70365785
chr6 42688156 42688169 POU2F2 JASPAR yes 42690312 2143 70365786
chr6 42688157 42688165 FOXL1 JASPAR yes 42690312 2147 70365787
chr6 42688157 42688166 POU3F4 JASPAR yes 42690312 2146 70365788
chr6 42688157 42688166 POU5F1B JASPAR yes 42690312 2146 70365789
chr6 42688180 42688186 NFE2 TRANSFAC yes 42690312 2126 70365790
chr6 42688193 42688201 MEIS3 JASPAR yes 42690312 2111 70365791
chr6 42688194 42688198 NFE TRANSFAC yes 42690312 2114 70365792
chr6 42688195 42688206 USF1 JASPAR yes 42690312 2106 70365793
chr6 42688195 42688206 USF2 JASPAR yes 42690312 2106 70365794
chr6 42688196 42688203 USF2 TRANSFAC yes 42690312 2109 70365795
chr6 42688196 42688207 EBF1 JASPAR yes 42690312 2105 70365796
chr6 42688198 42688203 USF2 TRANSFAC yes 42690312 2109 70365797
chr6 42688203 42688208 ETS2 TRANSFAC yes 42690312 2104 70365798
chr6 42688208 42688212 LFA1 TRANSFAC yes 42690312 2100 70365799
chr6 42688238 42688243 TFAP2A TRANSFAC yes 42690312 2069 70365800
chr6 42688238 42688244 MZF1 JASPAR yes 42690312 2068 70365801
chr6 42688262 42688268 ZNF354C JASPAR yes 42690312 2044 70365802
chr6 42688265 42688280 FOXP1 JASPAR yes 42690312 2032 70365803
chr6 42688268 42688282 IRF7 JASPAR yes 42690312 2030 70365804
chr6 42688288 42688299 ESRRA JASPAR yes 42690312 2013 70365805
chr6 42688288 42688299 ESRRB JASPAR yes 42690312 2013 70365806
chr6 42688289 42688297 NR4A2 JASPAR yes 42690312 2015 70365807
chr6 42688290 42688300 RORA JASPAR yes 42690312 2012 70365808
chr6 42688290 42688307 RARA JASPAR yes 42690312 2005 70365809
chr6 42688308 42688327 CTCF JASPAR yes 42690312 1985 70365810
chr6 42688322 42688326 LFA1 TRANSFAC yes 42690312 1986 70365811
chr6 42688329 42688333 TEAD2 TRANSFAC yes 42690312 1979 70365812
chr6 42688340 42688344 YY1 TRANSFAC yes 42690312 1968 70365813
chr6 42688349 42688357 NKX6-1 JASPAR yes 42690312 1955 70365814
chr6 42688351 42688355 YY1 TRANSFAC yes 42690312 1957 70365815
chr6 42694307 42694727 CTCF UCSC Txn Factor no Conserved 42690312 3995 108540279
chr6 42694330 42694570 FOXA1 UCSC Txn Factor no Conserved 42690312 4018 108540280
chr6 42694335 42694356 ZNF263 JASPAR yes 42690312 4023 70365816
chr6 42694341 42694362 ZNF263 JASPAR yes 42690312 4029 70365817
chr6 42694342 42694363 ZNF263 JASPAR yes 42690312 4030 70365818
chr6 42694343 42694348 ETS2 TRANSFAC yes 42690312 4031 70365819
chr6 42694346 42694360 SPI1 JASPAR yes 42690312 4034 70365820
chr6 42694346 42694360 SPIC JASPAR yes 42690312 4034 70365821
chr6 42694347 42694360 ELF1 JASPAR yes 42690312 4035 70365822
chr6 42694350 42694357 SPIB JASPAR yes 42690312 4038 70365823
chr6 42694372 42694386 STAT1 JASPAR yes 42690312 4060 70365824
chr6 42694374 42694395 IRF1 JASPAR yes 42690312 4062 70365825
chr6 42694374 42694644 SMC3 UCSC Txn Factor no Conserved 42690312 4062 108540281
chr6 42694376 42694640 RAD21 UCSC Txn Factor no Conserved 42690312 4064 108540282
chr6 42694387 42694402 MEF2C JASPAR yes 42690312 4075 70365826
chr6 42694388 42694403 MEF2A JASPAR yes 42690312 4076 70365827
chr6 42694389 42694401 MEF2A JASPAR yes 42690312 4077 70365828
chr6 42694389 42694401 MEF2B JASPAR yes 42690312 4077 70365829
chr6 42694389 42694401 MEF2D JASPAR yes 42690312 4077 70365830
chr6 42694390 42694400 MEF2A JASPAR yes 42690312 4078 70365831
chr6 42694411 42694414 MYB TRANSFAC yes 42690312 4099 70365832
chr6 42694411 42694422 PHOX2A JASPAR yes 42690312 4099 70365833
chr6 42694434 42694446 E2F8 JASPAR yes 42690312 4122 70365834
chr6 42694442 42694455 NR2F1 JASPAR yes 42690312 4130 70365835
chr6 42694444 42694455 ESRRA JASPAR yes 42690312 4132 70365836
chr6 42694444 42694455 ESRRB JASPAR yes 42690312 4132 70365837
chr6 42694446 42694456 RORA JASPAR yes 42690312 4134 70365838
chr6 42694455 42694466 HOXC12 JASPAR yes 42690312 4143 70365839
chr6 42694456 42694466 HOXD11 JASPAR yes 42690312 4144 70365840
chr6 42694470 42694477 CEBPA TRANSFAC yes 42690312 4158 70365841
chr6 42694474 42694480 SP1 TRANSFAC yes 42690312 4162 70365842
chr6 42694475 42694480 SP1 TRANSFAC yes 42690312 4163 70365843
chr6 42694494 42694514 TP53 JASPAR yes 42690312 4182 70365844
chr6 42694502 42694508 ZNF354C JASPAR yes 42690312 4190 70365845
chr6 42694504 42694523 CTCF JASPAR yes 42690312 4192 70365846
chr6 42694507 42694522 ZIC4 JASPAR yes 42690312 4195 70365847
chr6 42694507 42694524 RARA JASPAR yes 42690312 4195 70365848
chr6 42694517 42694532 MEF2C JASPAR yes 42690312 4205 70365849
chr6 42694518 42694533 MEF2A JASPAR yes 42690312 4206 70365850
chr6 42694543 42694553 NFATC3 JASPAR yes 42690312 4231 70365851
chr6 42694553 42694556 MYB TRANSFAC yes 42690312 4241 70365852
chr6 42694566 42694572 MZF1 JASPAR yes 42690312 4254 70365853
chr6 42694589 42694610 IRF1 JASPAR yes 42690312 4277 70365854
chr6 42694591 42694612 IRF1 JASPAR yes 42690312 4279 70365855
chr6 42694604 42694619 AR JASPAR yes 42690312 4292 70365856
chr6 42694619 42694625 HiNF-A TRANSFAC yes 42690312 4307 70365857
chr6 42694626 42694638 E2F8 JASPAR yes 42690312 4314 70365858
chr6 42694695 42694701 TCF4 TRANSFAC yes 42690312 4383 70365859
chr6 42694698 42694709 FLI1 JASPAR yes 42690312 4386 70365860
chr6 42694699 42694704 ETS2 TRANSFAC yes 42690312 4387 70365861
chr6 42694706 42694714 HOXA5 JASPAR yes 42690312 4394 70365862
chr6 42694707 42694717 EMX1 JASPAR yes 42690312 4395 70365863
chr6 42694707 42694717 EMX2 JASPAR yes 42690312 4395 70365864
chr6 42694707 42694717 GBX2 JASPAR yes 42690312 4395 70365865
chr6 42694707 42694717 GSX1 JASPAR yes 42690312 4395 70365866
chr6 42694707 42694717 GSX2 JASPAR yes 42690312 4395 70365867
chr6 42694707 42694717 HOXB2 JASPAR yes 42690312 4395 70365868
chr6 42694707 42694717 HOXB3 JASPAR yes 42690312 4395 70365869
chr6 42694707 42694717 LHX6 JASPAR yes 42690312 4395 70365870
chr6 42694707 42694717 MEOX1 JASPAR yes 42690312 4395 70365871
chr6 42694707 42694717 MEOX2 JASPAR yes 42690312 4395 70365872
chr6 42694707 42694717 MNX1 JASPAR yes 42690312 4395 70365873
chr6 42694707 42694717 POU6F1 JASPAR yes 42690312 4395 70365874
chr6 42694707 42694717 RAX JASPAR yes 42690312 4395 70365875
chr6 42694708 42694716 LMX1A JASPAR yes 42690312 4396 70365876
chr6 42694708 42694716 LMX1B JASPAR yes 42690312 4396 70365877
chr6 42694708 42694716 NKX6-1 JASPAR yes 42690312 4396 70365878
chr6 42694708 42694716 NKX6-2 JASPAR yes 42690312 4396 70365879
chr6 42694708 42694716 PDX1 JASPAR yes 42690312 4396 70365880
chr6 42694708 42694716 VAX1 JASPAR yes 42690312 4396 70365881
chr6 42694708 42694716 VAX2 JASPAR yes 42690312 4396 70365882
chr6 42694708 42694716 VSX1 JASPAR yes 42690312 4396 70365883
chr6 42694717 42694721 NFE TRANSFAC yes 42690312 4405 70365884
chr6 42694728 42694734 MAZ TRANSFAC yes 42690312 4416 70365885
SNPs associated with PRPH2[ENSG00000112619.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr6 42715323 rs16896053 C T 25011 Esophagus 0.0770015 9034352
chr6 42677875 rs6915637 T G 0 Esophagus 0.0102806 9034089
chr6 42671099 rs9471904 C T 0 Esophagus 0.0496014 9034030
chr6 42671817 rs67449353 AAC A 0 Stomach 0.000326008 9034049
Details of PRPH2[ENSG00000112619.6]
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Genomic Location chr6:42664340-42690312[-]
TSS 42690312
Gene Name PRPH2
Ensembl ID ENSG00000112619.6
ENTREZID 5961
Uniprot
P23942
Protein Name
Peripherin-2
Expression levels of PRPH2[ENSG00000112619.6]
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