EnhancerDB
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Enhancers that regulate USP4[ENSG00000114316.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 49274085 49278495 enh20582 49378145 99650
Esophagus Placenta Breast
chr3 49284065 49289935 enh20583 49378145 88210
Large Intestine Esophagus Placenta Peripheral Blood (MM.1S) Lung (PC-9) Uterus Stomach
chr3 49286239 49286578 vista40874 49378145 91567
VISTA
chr3 49299045 49305675 enh54122 49378145 72470
Colon (HCT116) Uterus Large Intestine
chr3 49330961 49335155 enh20584 49378145 42990
Muscle (Myotube) Placenta Heart
chr3 49343445 49347595 enh93159 49378145 30550
Liver (HepG2)
chr3 49347058 49347335 vista40875 49378145 30810
VISTA
chr3 49358291 49358883 vista40876 49378145 19262
VISTA
chr3 49368585 49372735 enh48691 49378145 5410
Thymus Stomach
chr3 49379445 49392755 enh7203 49378145 1300
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
chr3 49382516 49382833 vista40877 49378145 4371
VISTA
chr3 49389809 49389972 vista40878 49378145 11664
VISTA
chr3 49413089 49419555 enh20585 49378145 34944
Prostate (PC-3) Esophagus Astrocyte Blood (GM12878) Placenta Colon (HCT116) Muscle (Myoblast)
chr3 49419751 49431500 enh63137 49378145 41606
Esophagus Prostate (PC-3) Cervix (HeLa-S3) Colon (HCT116)
chr3 49425171 49425361 vista40879 49378145 47026
VISTA
chr3 49432126 49441591 enh35394 49378145 53981
Bone Marrow (K562) Astrocyte Stomach Muscle (A673) Colon (HCT116) Thyroid Uterus Heart
chr3 49444905 49449295 enh100022 49378145 66760
Uterus
Transcript facotrs that regulate USP4[ENSG00000114316.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 49382285 49382306 REST JASPAR yes 49378145 4140 2282456
chr3 49382286 49382305 REST JASPAR yes 49378145 4141 2282457
chr3 49382288 49382297 HIC2 JASPAR yes 49378145 4143 2282458
chr3 49382290 49382300 SP1 JASPAR yes 49378145 4145 2282459
chr3 49382291 49382295 LFA1 TRANSFAC yes 49378145 4146 2282460
chr3 49382291 49382311 TP63 JASPAR yes 49378145 4146 2282461
chr3 49382360 49382370 SP1 JASPAR yes 49378145 4215 2282462
chr3 49382362 49382367 SP1 TRANSFAC yes 49378145 4217 2282463
chr3 49382362 49382374 HINFP JASPAR yes 49378145 4217 2282464
chr3 49382367 49382384 ESR1 JASPAR yes 49378145 4222 2282465
chr3 49382367 49382385 ESR2 JASPAR yes 49378145 4222 2282466
chr3 49382371 49382385 TLX1 JASPAR yes 49378145 4226 2282467
chr3 49382383 49382391 NR4A2 JASPAR yes 49378145 4238 2282468
chr3 49382386 49382396 SREBF1 JASPAR yes 49378145 4241 2282469
chr3 49382386 49382396 SREBF2 JASPAR yes 49378145 4241 2282470
chr3 49382388 49383043 POLR2A UCSC Txn Factor no Conserved 49378145 4243 108529151
chr3 49382409 49382413 LFA1 TRANSFAC yes 49378145 4264 2282471
chr3 49382411 49382432 IRF1 JASPAR yes 49378145 4266 2282472
chr3 49382413 49382428 IRF9 JASPAR yes 49378145 4268 2282473
chr3 49382415 49382430 PRDM1 JASPAR yes 49378145 4270 2282474
chr3 49382435 49382449 SPIC JASPAR yes 49378145 4290 2282475
chr3 49382438 49382453 FOXP1 JASPAR yes 49378145 4293 2282476
chr3 49382438 49382459 IRF1 JASPAR yes 49378145 4293 2282477
chr3 49382440 49382445 ETS2 TRANSFAC yes 49378145 4295 2282478
chr3 49382442 49382457 STAT2 JASPAR yes 49378145 4297 2282479
chr3 49382458 49382473 MEF2C JASPAR yes 49378145 4313 2282480
chr3 49382458 49382479 IRF1 JASPAR yes 49378145 4313 2282481
chr3 49382459 49382474 MEF2A JASPAR yes 49378145 4314 2282482
chr3 49382468 49382477 SRY JASPAR yes 49378145 4323 2282483
chr3 49382468 49382479 PHOX2A JASPAR yes 49378145 4323 2282484
chr3 49382468 49382479 PROP1 JASPAR yes 49378145 4323 2282485
chr3 49382471 49382480 VENTX JASPAR yes 49378145 4326 2282486
chr3 49382471 49382481 EN2 JASPAR yes 49378145 4326 2282487
chr3 49382471 49382481 ESX1 JASPAR yes 49378145 4326 2282488
chr3 49382471 49382481 GBX2 JASPAR yes 49378145 4326 2282489
chr3 49382472 49382480 BARX1 JASPAR yes 49378145 4327 2282490
chr3 49382485 49382497 CREB1 JASPAR yes 49378145 4340 2282491
chr3 49382486 49382880 NFIC UCSC Txn Factor no Conserved 49378145 4341 108529152
chr3 49382487 49382501 CREB3 JASPAR yes 49378145 4342 2282492
chr3 49382488 49382502 XBP1 JASPAR yes 49378145 4343 2282493
chr3 49382490 49382495 ATF1 TRANSFAC yes 49378145 4345 2282494
chr3 49382495 49382505 ID4 JASPAR yes 49378145 4350 2282495
chr3 49382495 49382505 TCF3 JASPAR yes 49378145 4350 2282496
chr3 49382495 49382505 TCF4 JASPAR yes 49378145 4350 2282497
chr3 49382496 49382505 SNAI2 JASPAR yes 49378145 4351 2282498
chr3 49382497 49382502 USF2 TRANSFAC yes 49378145 4352 2282499
chr3 49382514 49382528 RORA JASPAR yes 49378145 4369 2282500
chr3 49382514 49382528 RORA JASPAR yes 49378145 4369 70980021
chr3 49382520 49382820 SPI1 UCSC Txn Factor no Conserved 49378145 4375 108529153
chr3 49382527 49382535 TBX15 JASPAR yes 49378145 4382 2282501
chr3 49382527 49382535 TBX15 JASPAR yes 49378145 4382 70980022
chr3 49382527 49382538 E2F6 JASPAR yes 49378145 4382 2282502
chr3 49382527 49382538 E2F6 JASPAR yes 49378145 4382 70980023
chr3 49382528 49382533 SP1 TRANSFAC yes 49378145 4383 2282503
chr3 49382528 49382533 SP1 TRANSFAC yes 49378145 4383 70980024
chr3 49382543 49382823 RUNX3 UCSC Txn Factor no Conserved 49378145 4398 108529154
chr3 49382610 49382621 NFE2L2 JASPAR yes 49378145 4465 2282504
chr3 49382610 49382621 NFE2L2 JASPAR yes 49378145 4465 70980025
chr3 49382615 49382810 FOS UCSC Txn Factor no Conserved 49378145 4470 108529155
chr3 49382626 49382630 NFE TRANSFAC yes 49378145 4481 2282505
chr3 49382626 49382630 NFE TRANSFAC yes 49378145 4481 70980026
chr3 49382628 49382643 MEF2C JASPAR yes 49378145 4483 2282506
chr3 49382628 49382643 MEF2C JASPAR yes 49378145 4483 70980027
chr3 49382628 49382649 IRF1 JASPAR yes 49378145 4483 2282507
chr3 49382628 49382649 IRF1 JASPAR yes 49378145 4483 70980028
chr3 49382629 49382644 MEF2A JASPAR yes 49378145 4484 2282508
chr3 49382629 49382644 MEF2A JASPAR yes 49378145 4484 70980029
chr3 49382631 49382645 IRF7 JASPAR yes 49378145 4486 2282509
chr3 49382631 49382645 IRF7 JASPAR yes 49378145 4486 70980030
chr3 49382632 49382647 STAT2 JASPAR yes 49378145 4487 2282510
chr3 49382632 49382647 STAT2 JASPAR yes 49378145 4487 70980031
chr3 49382633 49382645 IRF1 JASPAR yes 49378145 4488 2282511
chr3 49382633 49382645 IRF1 JASPAR yes 49378145 4488 70980032
chr3 49382634 49382655 IRF1 JASPAR yes 49378145 4489 2282512
chr3 49382634 49382655 IRF1 JASPAR yes 49378145 4489 70980033
chr3 49382636 49382650 IRF7 JASPAR yes 49378145 4491 2282513
chr3 49382636 49382650 IRF7 JASPAR yes 49378145 4491 70980034
chr3 49382640 49382661 IRF1 JASPAR yes 49378145 4495 2282514
chr3 49382640 49382661 IRF1 JASPAR yes 49378145 4495 70980035
chr3 49382644 49382658 SPI1 JASPAR yes 49378145 4499 2282515
chr3 49382644 49382658 SPI1 JASPAR yes 49378145 4499 70980036
chr3 49382646 49382667 IRF1 JASPAR yes 49378145 4501 2282516
chr3 49382646 49382667 IRF1 JASPAR yes 49378145 4501 70980037
chr3 49382651 49382665 STAT1 JASPAR yes 49378145 4506 2282517
chr3 49382651 49382665 STAT1 JASPAR yes 49378145 4506 70980038
chr3 49382656 49382664 FOXO3 JASPAR yes 49378145 4511 2282518
chr3 49382656 49382664 FOXO3 JASPAR yes 49378145 4511 70980039
chr3 49382657 49382666 SRY JASPAR yes 49378145 4512 2282519
chr3 49382657 49382666 SRY JASPAR yes 49378145 4512 70980040
chr3 49382659 49382668 SOX9 JASPAR yes 49378145 4514 2282520
chr3 49382659 49382668 SOX9 JASPAR yes 49378145 4514 70980041
chr3 49382665 49382677 TAL1 JASPAR yes 49378145 4520 2282521
chr3 49382665 49382677 TAL1 JASPAR yes 49378145 4520 70980042
chr3 49382666 49382679 ZBTB18 JASPAR yes 49378145 4521 2282522
chr3 49382666 49382679 ZBTB18 JASPAR yes 49378145 4521 70980043
chr3 49382667 49382677 NEUROG2 JASPAR yes 49378145 4522 2282523
chr3 49382667 49382677 NEUROG2 JASPAR yes 49378145 4522 70980044
chr3 49382713 49382719 PEA3 TRANSFAC yes 49378145 4568 2282524
chr3 49382713 49382719 PEA3 TRANSFAC yes 49378145 4568 70980045
chr3 49382713 49382724 FLI1 JASPAR yes 49378145 4568 2282525
chr3 49382713 49382724 FLI1 JASPAR yes 49378145 4568 70980046
chr3 49382714 49382722 FEV JASPAR yes 49378145 4569 2282526
chr3 49382714 49382722 FEV JASPAR yes 49378145 4569 70980047
chr3 49382734 49382745 BATF JASPAR yes 49378145 4589 2282527
chr3 49382734 49382745 BATF JASPAR yes 49378145 4589 70980048
chr3 49382752 49382762 NFIA JASPAR yes 49378145 4607 2282528
chr3 49382752 49382762 NFIA JASPAR yes 49378145 4607 70980049
chr3 49382753 49382762 NFIX JASPAR yes 49378145 4608 2282529
chr3 49382753 49382762 NFIX JASPAR yes 49378145 4608 70980050
chr3 49382754 49382760 NFIC JASPAR yes 49378145 4609 2282530
chr3 49382754 49382760 NFIC JASPAR yes 49378145 4609 70980051
chr3 49382778 49382792 RORA JASPAR yes 49378145 4633 2282531
chr3 49382778 49382792 RORA JASPAR yes 49378145 4633 70980052
chr3 49382789 49382794 GATA2 JASPAR yes 49378145 4644 2282532
chr3 49382789 49382794 GATA2 JASPAR yes 49378145 4644 70980053
chr3 49382850 49382854 YY1 TRANSFAC yes 49378145 4705 2282533
chr3 49382856 49382868 HINFP JASPAR yes 49378145 4711 2282534
chr3 49382875 49382896 IRF1 JASPAR yes 49378145 4730 2282535
chr3 49382877 49382892 IRF9 JASPAR yes 49378145 4732 2282536
chr3 49382879 49382893 STAT1 JASPAR yes 49378145 4734 2282537
chr3 49382879 49382894 STAT2 JASPAR yes 49378145 4734 2282538
chr3 49382887 49382900 ELF1 JASPAR yes 49378145 4742 2282539
chr3 49382888 49382900 EHF JASPAR yes 49378145 4743 2282540
chr3 49382888 49382900 ELF4 JASPAR yes 49378145 4743 2282541
chr3 49382888 49382901 ELF3 JASPAR yes 49378145 4743 2282542
chr3 49382889 49382900 ELF5 JASPAR yes 49378145 4744 2282543
chr3 49382890 49382897 ETS1 TRANSFAC yes 49378145 4745 2282544
chr3 49382891 49382899 EHF JASPAR yes 49378145 4746 2282545
chr3 49382915 49382931 NFYA JASPAR yes 49378145 4770 2282546
chr3 49382918 49382933 NFYB JASPAR yes 49378145 4773 2282547
chr3 49382924 49382928 ESR1 TRANSFAC yes 49378145 4779 2282548
chr3 49382925 49382937 HNF1B JASPAR yes 49378145 4780 2282549
chr3 49382954 49382969 MEF2A JASPAR yes 49378145 4809 2282550
chr3 49382956 49382966 ALX3 JASPAR yes 49378145 4811 2282551
chr3 49382956 49382966 ESX1 JASPAR yes 49378145 4811 2282552
chr3 49382956 49382966 GSX1 JASPAR yes 49378145 4811 2282553
chr3 49382956 49382966 GSX2 JASPAR yes 49378145 4811 2282554
chr3 49382956 49382966 HOXB2 JASPAR yes 49378145 4811 2282555
chr3 49382956 49382966 HOXB3 JASPAR yes 49378145 4811 2282556
chr3 49382956 49382966 LBX2 JASPAR yes 49378145 4811 2282557
chr3 49382956 49382966 LHX2 JASPAR yes 49378145 4811 2282558
chr3 49382956 49382966 MEOX1 JASPAR yes 49378145 4811 2282559
chr3 49382956 49382966 MEOX2 JASPAR yes 49378145 4811 2282560
chr3 49382956 49382966 MIXL1 JASPAR yes 49378145 4811 2282561
chr3 49382956 49382966 MNX1 JASPAR yes 49378145 4811 2282562
chr3 49382956 49382966 NOTO JASPAR yes 49378145 4811 2282563
chr3 49382956 49382968 MEF2A JASPAR yes 49378145 4811 2282564
chr3 49382956 49382968 MEF2D JASPAR yes 49378145 4811 2282565
chr3 49382957 49382965 BSX JASPAR yes 49378145 4812 2282566
chr3 49382957 49382965 DLX6 JASPAR yes 49378145 4812 2282567
chr3 49382957 49382965 EN1 JASPAR yes 49378145 4812 2282568
chr3 49382957 49382965 ISX JASPAR yes 49378145 4812 2282569
chr3 49382957 49382965 LBX1 JASPAR yes 49378145 4812 2282570
chr3 49382957 49382965 LHX9 JASPAR yes 49378145 4812 2282571
chr3 49382957 49382965 LMX1A JASPAR yes 49378145 4812 2282572
chr3 49382957 49382965 LMX1B JASPAR yes 49378145 4812 2282573
chr3 49382957 49382965 NKX6-1 JASPAR yes 49378145 4812 2282574
chr3 49382957 49382965 NKX6-2 JASPAR yes 49378145 4812 2282575
chr3 49382957 49382965 PAX4 JASPAR yes 49378145 4812 2282576
chr3 49382957 49382965 PDX1 JASPAR yes 49378145 4812 2282577
chr3 49382957 49382965 PRRX1 JASPAR yes 49378145 4812 2282578
chr3 49382957 49382965 RAX2 JASPAR yes 49378145 4812 2282579
chr3 49382957 49382965 SHOX JASPAR yes 49378145 4812 2282580
chr3 49382957 49382965 UNCX JASPAR yes 49378145 4812 2282581
chr3 49382957 49382965 VAX1 JASPAR yes 49378145 4812 2282582
chr3 49382957 49382965 VAX2 JASPAR yes 49378145 4812 2282583
chr3 49382957 49382965 VSX1 JASPAR yes 49378145 4812 2282584
chr3 49382957 49382965 VSX2 JASPAR yes 49378145 4812 2282585
chr3 49382957 49382967 MEF2A JASPAR yes 49378145 4812 2282586
chr3 49382957 49382973 POU4F2 JASPAR yes 49378145 4812 2282587
chr3 49382957 49382973 POU4F3 JASPAR yes 49378145 4812 2282588
chr3 49382959 49382973 POU4F1 JASPAR yes 49378145 4814 2282589
chr3 49383009 49383028 REST JASPAR yes 49378145 4864 2282590
chr3 49383031 49383037 SP1 TRANSFAC yes 49378145 4886 2282591
chr3 49383032 49383037 SP1 TRANSFAC yes 49378145 4887 2282592
chr3 49383041 49383054 NR2F1 JASPAR yes 49378145 4896 2282593
chr3 49383045 49383049 ESR1 TRANSFAC yes 49378145 4900 2282594
chr3 49383071 49383074 MYB TRANSFAC yes 49378145 4926 2282595
chr3 49383092 49383107 MEF2C JASPAR yes 49378145 4947 2282596
chr3 49383093 49383108 MEF2A JASPAR yes 49378145 4948 2282597
chr3 49383094 49383106 MEF2A JASPAR yes 49378145 4949 2282598
chr3 49383094 49383106 MEF2B JASPAR yes 49378145 4949 2282599
chr3 49383094 49383106 MEF2D JASPAR yes 49378145 4949 2282600
chr3 49383107 49383126 PAX5 JASPAR yes 49378145 4962 2282601
chr3 49383115 49383135 RREB1 JASPAR yes 49378145 4970 2282602
chr3 49383116 49383126 SP1 JASPAR yes 49378145 4971 2282603
chr3 49383123 49383135 ZBTB7C JASPAR yes 49378145 4978 2282604
chr3 49383124 49383136 ZBTB7A JASPAR yes 49378145 4979 2282605
chr3 49383126 49383131 SP1 TRANSFAC yes 49378145 4981 2282606
SNPs associated with USP4[ENSG00000114316.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 48534815 rs142063845 G C 780449 Esophagus 0.113456 6723192
chr3 49383078 rs4955424 A G 4933 Heart 0.142487 6725162
chr3 49347147 rs55677747 T C 0 Pancreas 0.146558 6725058
chr3 48394249 rs116831889 A C 921015 Ovary 0.425022 6722852
chr3 49445785 rs6446271 A G 67640 Thyroid 0.150159 6725642
chr3 49370544 rs9883813 C G 0 Liver 0.401634 6725089
Details of USP4[ENSG00000114316.8]
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Genomic Location chr3:49315264-49378145[-]
TSS 49378145
Gene Name USP4
Ensembl ID ENSG00000114316.8
ENTREZID 7375
Uniprot
A0A024R2X6
Q08AK7
A0A024R2T0
Q13107
Protein Name
Alternative protein USP4
Ubiquitin carboxyl-terminal hydrolase 4
Ubiquitin specific peptidase 4
Expression levels of USP4[ENSG00000114316.8]
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