EnhancerDB
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Enhancers that regulate TUBA1A[ENSG00000167552.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 49508076 49508435 vista13325 49583107 74672
VISTA
chr12 49513005 49521435 enh60375 49583107 61672
Muscle (A673) Cervix (HeLa-S3) Blood (OCI-LY7)
chr12 49530425 49534655 enh75036 49583107 48452
Muscle (A673) Brain (SK-N-MC)
chr12 49552117 49556563 enh60376 49583107 26544
Bone Marrow (K562) Blood (OCI-LY7)
chr12 49584331 49584382 vista13326 49583107 1224
VISTA
chr12 49590445 49597955 enh2325 49583107 7338
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Lung (PC-9) Bone (Osteoblast) Muscle (A673) Blood (Karpas-422) Muscle (Myoblast) Breast Spleen Uterus Thymus Heart
chr12 49591156 49591248 vista13327 49583107 8049
VISTA
chr12 49592771 49592915 vista13328 49583107 9664
VISTA
chr12 49594805 49595186 vista13329 49583107 11698
VISTA
chr12 49595765 49596022 vista13330 49583107 12658
VISTA
chr12 49605493 49611219 enh29565 49583107 22386
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Stomach Muscle (A673) Adrenal Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Heart
chr12 49614345 49621732 enh14696 49583107 31238
Brain (SK-N-SH) Large Intestine Astrocyte Bone (Osteoblast) Muscle (A673) Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Uterus Stomach
chr12 49622598 49622695 vista13331 49583107 39491
VISTA
chr12 49623729 49631475 enh2326 49583107 40622
Bone Marrow (K562) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (A673) Uterus Blood (Karpas-422) Muscle (Myoblast) Neural Stem Cells (H9) Stomach
chr12 49624607 49624922 vista13332 49583107 41500
VISTA
chr12 49626851 49627096 vista13333 49583107 43744
VISTA
chr12 49628278 49628526 vista13334 49583107 45171
VISTA
chr12 49635979 49642155 enh14697 49583107 52872
Cervix (HeLa-S3) Astrocyte Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Epithelial (MCF-7)
chr12 49641026 49641246 vista13335 49583107 57919
VISTA
chr12 49644945 49649095 enh96297 49583107 61838
Epithelial (MCF-7)
chr12 49646906 49646981 vista13336 49583107 63799
VISTA
chr12 49651965 49661224 enh29566 49583107 68858
Prostate (PC-3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Colon (HCT116) Lung (PC-9) Stomach
chr12 49668765 49679836 enh14698 49583107 85658
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Muscle (A673) Placenta Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9)
chr12 49678404 49678529 vista13337 49583107 95297
VISTA
Transcript facotrs that regulate TUBA1A[ENSG00000167552.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 49584235 49584479 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 49583107 1128 108029806
chr12 49584357 49584378 ZNF263 JASPAR yes 49583107 1250 82399984
chr12 49584369 49584375 MAZ TRANSFAC yes 49583107 1262 82399985
chr12 49584369 49584380 E2F6 JASPAR yes 49583107 1262 82399986
chr12 49584371 49584379 SP1 TRANSFAC yes 49583107 1264 82399987
chr12 49584373 49584379 MAZ TRANSFAC yes 49583107 1266 82399988
SNPs associated with TUBA1A[ENSG00000167552.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 49733548 rs116137704 G A 150441 Esophagus 0.0246482 2620749
chr12 50331258 rs117138904 C T 748151 Esophagus 0.37738 2624199
chr12 49900106 rs112647463 A AG 316999 Thyroid 0.056749 2621754
chr12 49674786 rs544005658 G GA 91679 Stomach 0.502589 2620264
chr12 50458730 rs112532318 C A 875623 Adrenal 0.42901 2624693
Details of TUBA1A[ENSG00000167552.9]
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Genomic Location chr12:49578579-49583107[-]
TSS 49583107
Gene Name TUBA1A
Ensembl ID ENSG00000167552.9
ENTREZID 7846
Uniprot
Q71U36
Protein Name
Tubulin alpha chain
Tubulin alpha-1A chain
Expression levels of TUBA1A[ENSG00000167552.9]
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