EnhancerDB
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Enhancers that regulate TUBA1C[ENSG00000167553.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 49508076 49508435 vista13325 49582519 74084
VISTA
chr12 49513005 49521435 enh60375 49582519 61084
Muscle (A673) Cervix (HeLa-S3) Blood (OCI-LY7)
chr12 49530425 49534655 enh75036 49582519 47864
Muscle (A673) Brain (SK-N-MC)
chr12 49552117 49556563 enh60376 49582519 25956
Bone Marrow (K562) Blood (OCI-LY7)
chr12 49584331 49584382 vista13326 49582519 1812
VISTA
chr12 49590445 49597955 enh2325 49582519 7926
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Lung (PC-9) Bone (Osteoblast) Muscle (A673) Blood (Karpas-422) Muscle (Myoblast) Breast Spleen Uterus Thymus Heart
chr12 49591156 49591248 vista13327 49582519 8637
VISTA
chr12 49592771 49592915 vista13328 49582519 10252
VISTA
chr12 49594805 49595186 vista13329 49582519 12286
VISTA
chr12 49595765 49596022 vista13330 49582519 13246
VISTA
chr12 49605493 49611219 enh29565 49582519 22974
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Stomach Muscle (A673) Adrenal Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Heart
chr12 49614345 49621732 enh14696 49582519 31826
Brain (SK-N-SH) Large Intestine Astrocyte Bone (Osteoblast) Muscle (A673) Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Uterus Stomach
chr12 49622598 49622695 vista13331 49582519 40079
VISTA
chr12 49623729 49631475 enh2326 49582519 41210
Bone Marrow (K562) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (A673) Uterus Blood (Karpas-422) Muscle (Myoblast) Neural Stem Cells (H9) Stomach
chr12 49624607 49624922 vista13332 49582519 42088
VISTA
chr12 49626851 49627096 vista13333 49582519 44332
VISTA
chr12 49628278 49628526 vista13334 49582519 45759
VISTA
chr12 49635979 49642155 enh14697 49582519 53460
Cervix (HeLa-S3) Astrocyte Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Epithelial (MCF-7)
chr12 49641026 49641246 vista13335 49582519 58507
VISTA
chr12 49644945 49649095 enh96297 49582519 62426
Epithelial (MCF-7)
chr12 49646906 49646981 vista13336 49582519 64387
VISTA
chr12 49651965 49661224 enh29566 49582519 69446
Prostate (PC-3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Colon (HCT116) Lung (PC-9) Stomach
chr12 49668765 49679836 enh14698 49582519 86246
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Muscle (A673) Placenta Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9)
chr12 49678404 49678529 vista13337 49582519 95885
VISTA
Transcript facotrs that regulate TUBA1C[ENSG00000167553.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 49584235 49584479 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 49582519 1716 108029806
chr12 49584357 49584378 ZNF263 JASPAR yes 49582519 1838 82399984
chr12 49584369 49584375 MAZ TRANSFAC yes 49582519 1850 82399985
chr12 49584369 49584380 E2F6 JASPAR yes 49582519 1850 82399986
chr12 49584371 49584379 SP1 TRANSFAC yes 49582519 1852 82399987
chr12 49584373 49584379 MAZ TRANSFAC yes 49582519 1854 82399988
SNPs associated with TUBA1C[ENSG00000167553.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 49666815 rs11542115 C T 0 Esophagus 0.0124529 2620150
chr12 49660989 rs12310093 C A,G,T 0 Esophagus 0.000647311 2620126
chr12 49740847 rs74089059 G T 73733 Breast 0.00961022 2620834
chr12 49658537 rs28365885 T C 0 Spleen 0.0756356 2620097
chr12 48813176 rs75561665 A G 769343 Ovary 0.0319803 2617028
chr12 49666815 rs11542115 C T 0 Thyroid 3.93705e-05 2620150
chr12 50206665 rs113384145 A G 539551 Liver 0.435049 2622960
chr12 49666815 rs11542115 C T 0 Lung 0.0183684 2620150
chr12 49704224 rs145914781 A G 37110 Stomach 0.0516884 2620590
Details of TUBA1C[ENSG00000167553.10]
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Genomic Location chr12:49582519-49667114[+]
TSS 49582519
Gene Name TUBA1C
Ensembl ID ENSG00000167553.10
ENTREZID 84790
Uniprot
Q9BQE3
F5H5D3
B7Z1K5
Protein Name
TUBA1C protein
Tubulin alpha chain
Tubulin alpha-1C chain
Expression levels of TUBA1C[ENSG00000167553.10]
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