EnhancerDB
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Enhancers that regulate CCDC96[ENSG00000173013.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr4 6924385 6951675 enh21343 7044728 93053
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr4 6951725 6961135 enh91529 7044728 83593
Bone Marrow (K562) Stomach
chr4 6959680 6959690 vista44043 7044728 85038
VISTA
chr4 6961565 6968843 enh54571 7044728 75885
Liver (HepG2) Large Intestine Blood (OCI-LY7) Blood (GM12878) Muscle (Myoblast) Neural Stem Cells (H9) Stomach
chr4 6964947 6965065 vista44044 7044728 79663
VISTA
chr4 6969764 6978594 enh21344 7044728 66134
Liver (HepG2) Large Intestine Prostate (RWPE1) Blood (T-cell) Blood (OCI-LY7) Stomach Placenta Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
chr4 6974782 6974959 vista44045 7044728 69769
VISTA
chr4 6983405 6995867 enh21345 7044728 48861
Prostate (PC-3) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Pancreas
chr4 6989470 6989868 vista44046 7044728 54860
VISTA
chr4 6998108 7006339 enh63266 7044728 38389
Esophagus Colon (HCT116)
chr4 7012933 7013112 vista44047 7044728 31616
VISTA
chr4 7020094 7026299 enh21346 7044728 18429
Prostate (PC-3) Cervix (HeLa-S3) Astrocyte Lung (A549) Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube)
chr4 7033487 7040317 enh36322 7044728 4411
Prostate (PC-3) Astrocyte Lung (A549) Colon (HCT116) Lung (PC-9)
chr4 7049265 7054795 enh65813 7044728 4537
Heart Ovary Pancreas Uterus Stomach
chr4 7073275 7080504 enh21347 7044728 28547
Muscle (Myoblast) Placenta
chr4 7088425 7095995 enh77213 7044728 43697
Pancreas Muscle (A673) Uterus Stomach
chr4 7101621 7109355 enh90226 7044728 56893
Bone Marrow (K562) Prostate (RWPE1) Bone (Osteoblast) Uterus Blood (T-cell)
chr4 7120135 7124381 enh90227 7044728 75407
Prostate (RWPE1)
chr4 7122134 7122443 vista44048 7044728 77406
VISTA
chr4 7123698 7124022 vista44049 7044728 78970
VISTA
chr4 7124823 7132655 enh63267 7044728 80095
Prostate (PC-3) Prostate (RWPE1) Esophagus Thyroid Pancreas Uterus Stomach
chr4 7132893 7143575 enh36323 7044728 88165
Prostate (RWPE1) Large Intestine Astrocyte Bone (Osteoblast) Thyroid Pancreas Uterus Stomach
chr4 7142827 7143002 vista44050 7044728 98099
VISTA
Transcript facotrs that regulate CCDC96[ENSG00000173013.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr4 7039727 7039733 LEF1 TRANSFAC yes 7044728 4995 88082388
chr4 7039727 7039733 SOX10 JASPAR yes 7044728 4995 88082389
chr4 7039731 7039736 GATA1 TRANSFAC yes 7044728 4992 88082390
chr4 7039735 7039741 SOX10 JASPAR yes 7044728 4987 88082391
chr4 7039787 7039798 FOXA1 JASPAR yes 7044728 4930 88082392
chr4 7039802 7039807 GATA2 JASPAR yes 7044728 4921 88082393
chr4 7039803 7039813 GBX2 JASPAR yes 7044728 4915 88082394
chr4 7039813 7039818 SP1 TRANSFAC yes 7044728 4910 88082395
chr4 7039824 7039834 TFAP4 JASPAR yes 7044728 4894 88082396
chr4 7039854 7039869 RUNX2 JASPAR yes 7044728 4859 88082397
chr4 7039864 7039872 GATA3 JASPAR yes 7044728 4856 88082398
chr4 7039867 7039883 E2F2 JASPAR yes 7044728 4845 88082399
chr4 7039871 7039882 YY2 JASPAR yes 7044728 4846 88082400
chr4 7039877 7039881 YY1 TRANSFAC yes 7044728 4847 88082401
chr4 7039889 7039900 USF2 JASPAR yes 7044728 4828 88082402
chr4 7039889 7039901 HES5 JASPAR yes 7044728 4827 88082403
chr4 7039890 7039900 TFEB JASPAR yes 7044728 4828 88082404
chr4 7039891 7039911 TP63 JASPAR yes 7044728 4817 88082405
chr4 7039892 7039910 TP53 JASPAR yes 7044728 4818 88082406
chr4 7039892 7039910 TP63 JASPAR yes 7044728 4818 88082407
chr4 7039892 7039910 TP73 JASPAR yes 7044728 4818 88082408
chr4 7039893 7039913 TP53 JASPAR yes 7044728 4815 88082409
chr4 7039894 7039909 TP53 JASPAR yes 7044728 4819 88082410
chr4 7039901 7039905 ESR1 TRANSFAC yes 7044728 4823 88082411
chr4 7039929 7039939 NKX2-3 JASPAR yes 7044728 4789 88082412
chr4 7039930 7039939 NKX2-8 JASPAR yes 7044728 4789 88082413
chr4 7039942 7039948 MZF1 JASPAR yes 7044728 4780 88082414
chr4 7039970 7039974 NFE TRANSFAC yes 7044728 4754 88082415
chr4 7039977 7039989 IRF1 JASPAR yes 7044728 4739 88082416
chr4 7039992 7040005 ELF1 JASPAR yes 7044728 4723 88082417
chr4 7039993 7040005 ELF4 JASPAR yes 7044728 4723 88082418
chr4 7039994 7040005 ETV2 JASPAR yes 7044728 4723 88082419
chr4 7039995 7040005 ELK3 JASPAR yes 7044728 4723 88082420
chr4 7039995 7040005 ERF JASPAR yes 7044728 4723 88082421
chr4 7039995 7040005 ERG JASPAR yes 7044728 4723 88082422
chr4 7039995 7040005 ETS1 JASPAR yes 7044728 4723 88082423
chr4 7039995 7040005 ETV6 JASPAR yes 7044728 4723 88082424
chr4 7039995 7040005 FEV JASPAR yes 7044728 4723 88082425
chr4 7039995 7040005 FLI1 JASPAR yes 7044728 4723 88082426
chr4 7039995 7040005 GABPA JASPAR yes 7044728 4723 88082427
chr4 7039995 7040006 ELK4 JASPAR yes 7044728 4722 88082428
chr4 7039995 7040006 FLI1 JASPAR yes 7044728 4722 88082429
chr4 7039996 7040004 EHF JASPAR yes 7044728 4724 88082430
chr4 7039996 7040004 FEV JASPAR yes 7044728 4724 88082431
chr4 7039997 7040004 SPI1 JASPAR yes 7044728 4724 88082432
chr4 7040017 7040035 IRF2 JASPAR yes 7044728 4693 88082433
chr4 7040022 7040034 IRF1 JASPAR yes 7044728 4694 88082434
chr4 7040044 7040055 E2F6 JASPAR yes 7044728 4673 88082435
chr4 7040048 7040053 ETS2 TRANSFAC yes 7044728 4675 88082436
chr4 7040057 7040071 POU1F1 JASPAR yes 7044728 4657 88082437
chr4 7040058 7040076 MAFF JASPAR yes 7044728 4652 88082438
chr4 7040093 7040105 IRF1 JASPAR yes 7044728 4623 88082439
chr4 7040168 7040183 NR2C2 JASPAR yes 7044728 4545 88082440
chr4 7040176 7040187 EBF1 JASPAR yes 7044728 4541 88082441
chr4 7040189 7040207 RARA JASPAR yes 7044728 4521 88082442
chr4 7040195 7040206 E2F6 JASPAR yes 7044728 4522 88082443
chr4 7040198 7040206 TBX15 JASPAR yes 7044728 4522 88082444
chr4 7040199 7040220 ZNF263 JASPAR yes 7044728 4508 88082445
chr4 7040214 7040225 EBF1 JASPAR yes 7044728 4503 88082446
chr4 7040229 7040244 RUNX2 JASPAR yes 7044728 4484 88082447
chr4 7040267 7040282 MEF2A JASPAR yes 7044728 4446 88082448
chr4 7040268 7040283 MEF2C JASPAR yes 7044728 4445 88082449
chr4 7040269 7040281 MEF2A JASPAR yes 7044728 4447 88082450
chr4 7040269 7040281 MEF2D JASPAR yes 7044728 4447 88082451
chr4 7040271 7040275 YY1 TRANSFAC yes 7044728 4453 88082452
chr4 7040280 7040294 GATA2 JASPAR yes 7044728 4434 88082453
chr4 7040282 7040288 GATA3 JASPAR yes 7044728 4440 88082454
chr4 7049294 7049309 TFAP2A JASPAR yes 7044728 4566 88082455
chr4 7049294 7049309 TFAP2C JASPAR yes 7044728 4566 88082456
chr4 7049297 7049309 TFAP2C JASPAR yes 7044728 4569 88082457
chr4 7049298 7049307 TFAP2A JASPAR yes 7044728 4570 88082458
chr4 7049303 7049308 SP1 TRANSFAC yes 7044728 4575 88082459
chr4 7049319 7049333 ZIC1 JASPAR yes 7044728 4591 88082460
chr4 7049319 7049334 ZIC4 JASPAR yes 7044728 4591 88082461
chr4 7049343 7049356 SMAD2 JASPAR yes 7044728 4615 88082462
chr4 7049344 7049350 PEA3 TRANSFAC yes 7044728 4616 88082463
chr4 7049350 7049362 PKNOX1 JASPAR yes 7044728 4622 88082464
chr4 7049350 7049362 PKNOX2 JASPAR yes 7044728 4622 88082465
chr4 7049350 7049362 TGIF2 JASPAR yes 7044728 4622 88082466
chr4 7049351 7049361 MSC JASPAR yes 7044728 4623 88082467
chr4 7049351 7049361 MYF6 JASPAR yes 7044728 4623 88082468
chr4 7049359 7049368 ZEB1 JASPAR yes 7044728 4631 88082469
chr4 7049362 7049367 USF2 TRANSFAC yes 7044728 4634 88082470
chr4 7049366 7049378 HES5 JASPAR yes 7044728 4638 88082471
chr4 7049366 7049378 HES7 JASPAR yes 7044728 4638 88082472
chr4 7049366 7049378 PKNOX1 JASPAR yes 7044728 4638 88082473
chr4 7049366 7049378 PKNOX2 JASPAR yes 7044728 4638 88082474
chr4 7049366 7049378 TGIF2 JASPAR yes 7044728 4638 88082475
chr4 7049367 7049376 SNAI2 JASPAR yes 7044728 4639 88082476
chr4 7049367 7049377 HEY2 JASPAR yes 7044728 4639 88082477
chr4 7049367 7049377 ID4 JASPAR yes 7044728 4639 88082478
chr4 7049367 7049377 TCF4 JASPAR yes 7044728 4639 88082479
chr4 7049372 7049386 MTF1 JASPAR yes 7044728 4644 88082480
chr4 7049373 7049386 TFAP2A JASPAR yes 7044728 4645 88082481
chr4 7049373 7049386 TFAP2B JASPAR yes 7044728 4645 88082482
chr4 7049373 7049386 TFAP2C JASPAR yes 7044728 4645 88082483
chr4 7049378 7049387 THAP1 JASPAR yes 7044728 4650 88082484
chr4 7049381 7049385 LFA1 TRANSFAC yes 7044728 4653 88082485
chr4 7049395 7049402 PEA3 TRANSFAC yes 7044728 4667 88082486
chr4 7049400 7049419 CTCF JASPAR yes 7044728 4672 88082487
chr4 7049411 7049416 ETS2 TRANSFAC yes 7044728 4683 88082488
chr4 7049415 7049434 CTCF JASPAR yes 7044728 4687 88082489
chr4 7049421 7049433 YY1 JASPAR yes 7044728 4693 88082490
chr4 7049424 7049430 YY1 JASPAR yes 7044728 4696 88082491
chr4 7049436 7049457 ZNF263 JASPAR yes 7044728 4708 88082492
chr4 7049439 7049460 ZNF263 JASPAR yes 7044728 4711 88082493
chr4 7049451 7049457 PEA3 TRANSFAC yes 7044728 4723 88082494
chr4 7049452 7049460 EHF JASPAR yes 7044728 4724 88082495
chr4 7049456 7049461 ETS2 TRANSFAC yes 7044728 4728 88082496
chr4 7049456 7049464 EHF JASPAR yes 7044728 4728 88082497
chr4 7049520 7049541 ZNF263 JASPAR yes 7044728 4792 88082498
chr4 7049523 7049529 PEA3 TRANSFAC yes 7044728 4795 88082499
chr4 7049523 7049534 FLI1 JASPAR yes 7044728 4795 88082500
chr4 7049620 7049632 NHLH1 JASPAR yes 7044728 4892 88082501
chr4 7049621 7049630 SNAI2 JASPAR yes 7044728 4893 88082502
chr4 7049621 7049631 ID4 JASPAR yes 7044728 4893 88082503
chr4 7049621 7049631 NHLH1 JASPAR yes 7044728 4893 88082504
chr4 7049621 7049631 TCF3 JASPAR yes 7044728 4893 88082505
chr4 7049621 7049631 TCF4 JASPAR yes 7044728 4893 88082506
chr4 7049632 7049644 HES5 JASPAR yes 7044728 4904 88082507
chr4 7049632 7049644 HES7 JASPAR yes 7044728 4904 88082508
chr4 7049633 7049643 HEY1 JASPAR yes 7044728 4905 88082509
chr4 7049633 7049643 HEY2 JASPAR yes 7044728 4905 88082510
chr4 7049646 7049667 ZNF263 JASPAR yes 7044728 4918 88082511
chr4 7049656 7049666 SP1 JASPAR yes 7044728 4928 88082512
chr4 7049664 7049673 PITX3 JASPAR yes 7044728 4936 88082513
chr4 7049664 7049674 GSC2 JASPAR yes 7044728 4936 88082514
chr4 7049664 7049674 GSC JASPAR yes 7044728 4936 88082515
chr4 7049665 7049673 OTX1 JASPAR yes 7044728 4937 88082516
chr4 7049676 7049685 SNAI2 JASPAR yes 7044728 4948 88082517
chr4 7049676 7049686 ID4 JASPAR yes 7044728 4948 88082518
chr4 7049676 7049686 TCF3 JASPAR yes 7044728 4948 88082519
chr4 7049676 7049686 TCF4 JASPAR yes 7044728 4948 88082520
chr4 7049685 7049691 MZF1 JASPAR yes 7044728 4957 88082521
chr4 7049707 7049717 MYF6 JASPAR yes 7044728 4979 88082522
SNPs associated with CCDC96[ENSG00000173013.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr4 6977111 rs114456407 A G 65468 Esophagus 0.185059 7382287
chr4 7750911 rs78040705 G A 706183 Esophagus 0.0520099 7389819
chr4 6735697 rs75598363 C T 306882 Heart 0.202197 7379455
chr4 7738730 rs6840685 A C 694002 Spleen 0.441842 7389758
chr4 6690526 rs7657093 T C 352053 Uterus 0.449256 7378913
chr4 7375115 rs73079985 A C 330387 Liver 0.382327 7386879
chr4 7635271 rs137907478 CTTGCTTGGACCAT C 590543 Lung 0.045483 7389270
chr4 7511472 rs68042441 G A 466744 Stomach 0.116621 7387945
chr4 6527228 rs141263483 T TA 515351 Adrenal 0.299521 7377522
Details of CCDC96[ENSG00000173013.4]
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Genomic Location chr4:7042579-7044728[-]
TSS 7044728
Gene Name CCDC96
Ensembl ID ENSG00000173013.4
ENTREZID 257236
Uniprot
Q2M329
Protein Name
Coiled-coil domain-containing protein 96
Expression levels of CCDC96[ENSG00000173013.4]
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