EnhancerDB
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Enhancers that regulate TMEM200B[ENSG00000253304.1]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 29352985 29358015 enh74169 29450447 92432
Muscle (A673) Brain (SK-N-MC)
chr1 29368185 29378775 enh74170 29450447 71672
Muscle (A673) Uterus
chr1 29370205 29370321 vista1014 29450447 80126
VISTA
chr1 29387245 29391395 enh98435 29450447 59052
Uterus
chr1 29405185 29412915 enh98436 29450447 37532
Uterus Brain (SK-N-MC) Stomach
chr1 29430385 29434695 enh92040 29450447 15752
Liver (HepG2) Cervix (HeLa-S3) Lung (PC-9) Epithelial (MCF-7)
chr1 29451057 29451462 vista1015 29450447 610
VISTA
chr1 29458225 29464555 enh111367 29450447 7778
Brain (SK-N-MC)
chr1 29469097 29473153 enh85948 29450447 18650
Colon (HCT116)
chr1 29481045 29485835 enh11686 29450447 30598
Bone Marrow (K562) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Ovary Lung Muscle (A673) Placenta Uterus Neural Stem Cells (H9) Stomach
chr1 29487085 29491455 enh26595 29450447 36638
Astrocyte Neural Stem Cells (H9)
chr1 29500805 29506459 enh11687 29450447 50358
Liver (HepG2) Large Intestine Esophagus Astrocyte Muscle (A673) Placenta Uterus Blood (T-cell)
chr1 29503706 29504118 vista1016 29450447 53259
VISTA
chr1 29504261 29504387 vista1017 29450447 53814
VISTA
chr1 29510785 29518975 enh11688 29450447 60338
Placenta
chr1 29513219 29513546 vista1018 29450447 62772
VISTA
chr1 29517304 29517322 vista1019 29450447 66857
VISTA
chr1 29533746 29538040 enh42917 29450447 83299
Muscle (Myoblast) Muscle (Myotube) Bone (Osteoblast)
Transcript facotrs that regulate TMEM200B[ENSG00000253304.1]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 29450699 29451215 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 29450447 252 107802672
chr1 29451063 29451067 H1TF2 TRANSFAC yes 29450447 616 118263544
chr1 29451063 29451067 NFE TRANSFAC yes 29450447 616 118263545
chr1 29451063 29451067 SRF TRANSFAC yes 29450447 616 118263546
chr1 29451067 29451070 MYB TRANSFAC yes 29450447 620 118263547
chr1 29451072 29451078 MAZ TRANSFAC yes 29450447 625 118263548
chr1 29451094 29451100 SP1 TRANSFAC yes 29450447 647 118263549
chr1 29451104 29451118 PLAG1 JASPAR yes 29450447 657 118263550
chr1 29451104 29451123 CTCF JASPAR yes 29450447 657 118263551
chr1 29451105 29451117 TFAP2A JASPAR yes 29450447 658 118263552
chr1 29451105 29451118 TFAP2A JASPAR yes 29450447 658 118263553
chr1 29451105 29451118 TFAP2B JASPAR yes 29450447 658 118263554
chr1 29451105 29451118 TFAP2C JASPAR yes 29450447 658 118263555
chr1 29451113 29451120 SP1 TRANSFAC yes 29450447 666 118263556
chr1 29451115 29451120 SP1 TRANSFAC yes 29450447 668 118263557
chr1 29451126 29451137 E2F4 JASPAR yes 29450447 679 118263558
chr1 29451127 29451138 E2F1 JASPAR yes 29450447 680 118263559
chr1 29451134 29451145 E2F4 JASPAR yes 29450447 687 118263560
chr1 29451134 29451145 E2F6 JASPAR yes 29450447 687 118263561
chr1 29451135 29451146 E2F1 JASPAR yes 29450447 688 118263562
chr1 29451138 29451145 SP1 TRANSFAC yes 29450447 691 118263563
chr1 29451139 29451144 SP1 TRANSFAC yes 29450447 692 118263564
chr1 29451139 29451145 SP1 TRANSFAC yes 29450447 692 118263565
chr1 29451141 29451154 TFAP2A JASPAR yes 29450447 694 118263566
chr1 29451141 29451154 TFAP2B JASPAR yes 29450447 694 118263567
chr1 29451141 29451154 TFAP2C JASPAR yes 29450447 694 118263568
chr1 29451141 29451156 TFAP2C JASPAR yes 29450447 694 118263569
chr1 29451142 29451153 EBF1 JASPAR yes 29450447 695 118263570
chr1 29451142 29451154 TFAP2A JASPAR yes 29450447 695 118263571
chr1 29451142 29451154 TFAP2B JASPAR yes 29450447 695 118263572
chr1 29451142 29451154 TFAP2C JASPAR yes 29450447 695 118263573
chr1 29451147 29451166 PAX5 JASPAR yes 29450447 700 118263574
chr1 29451150 29451162 TEAD1 JASPAR yes 29450447 703 118263575
chr1 29451153 29451161 TEAD3 JASPAR yes 29450447 706 118263576
chr1 29451175 29451181 SP1 TRANSFAC yes 29450447 728 118263577
chr1 29451176 29451181 SP1 TRANSFAC yes 29450447 729 118263578
chr1 29451192 29451211 RFX2 JASPAR yes 29450447 745 118263579
chr1 29451196 29451206 NFATC3 JASPAR yes 29450447 749 118263580
chr1 29451204 29451218 GLIS2 JASPAR yes 29450447 757 118263581
chr1 29451211 29451218 SP1 TRANSFAC yes 29450447 764 118263582
chr1 29451211 29451232 ZNF263 JASPAR yes 29450447 764 118263583
chr1 29451213 29451218 SP1 TRANSFAC yes 29450447 766 118263584
chr1 29451214 29451219 SP1 TRANSFAC yes 29450447 767 118263585
chr1 29451223 29451233 SP1 JASPAR yes 29450447 776 118263586
chr1 29451228 29451233 SP1 TRANSFAC yes 29450447 781 118263587
chr1 29451239 29451244 H4TF1 TRANSFAC yes 29450447 792 118263588
chr1 29451255 29451259 ESR1 TRANSFAC yes 29450447 808 118263589
chr1 29451265 29451279 GLIS2 JASPAR yes 29450447 818 118263590
chr1 29451265 29451279 GLIS3 JASPAR yes 29450447 818 118263591
chr1 29451265 29451280 ZIC4 JASPAR yes 29450447 818 118263592
chr1 29451274 29451280 PEA3 TRANSFAC yes 29450447 827 118263593
chr1 29451276 29451287 NFKB1 JASPAR yes 29450447 829 118263594
chr1 29451277 29451287 RELA JASPAR yes 29450447 830 118263595
chr1 29451277 29451287 REL JASPAR yes 29450447 830 118263596
chr1 29451278 29451289 ELK4 JASPAR yes 29450447 831 118263597
chr1 29451279 29451289 ELK1 JASPAR yes 29450447 832 118263598
chr1 29451279 29451289 ELK3 JASPAR yes 29450447 832 118263599
chr1 29451279 29451289 ERF JASPAR yes 29450447 832 118263600
chr1 29451279 29451289 ERG JASPAR yes 29450447 832 118263601
chr1 29451279 29451289 ETS1 JASPAR yes 29450447 832 118263602
chr1 29451279 29451289 ETV1 JASPAR yes 29450447 832 118263603
chr1 29451279 29451289 ETV4 JASPAR yes 29450447 832 118263604
chr1 29451279 29451289 FEV JASPAR yes 29450447 832 118263605
chr1 29451279 29451289 FLI1 JASPAR yes 29450447 832 118263606
chr1 29451279 29451290 ETV2 JASPAR yes 29450447 832 118263607
chr1 29451280 29451288 FEV JASPAR yes 29450447 833 118263608
chr1 29451280 29451289 ELK4 JASPAR yes 29450447 833 118263609
chr1 29451281 29451287 ETS1 JASPAR yes 29450447 834 118263610
chr1 29451281 29451291 ELK1 JASPAR yes 29450447 834 118263611
chr1 29451281 29451293 E2F8 JASPAR yes 29450447 834 118263612
chr1 29451290 29451302 PBX1 JASPAR yes 29450447 843 118263613
chr1 29451292 29451302 CUX1 JASPAR yes 29450447 845 118263614
chr1 29451292 29451302 CUX2 JASPAR yes 29450447 845 118263615
chr1 29451304 29451311 SP1 TRANSFAC yes 29450447 857 118263616
chr1 29451305 29451312 SP1 TRANSFAC yes 29450447 858 118263617
chr1 29451306 29451311 SP1 TRANSFAC yes 29450447 859 118263618
chr1 29451306 29451312 SP1 TRANSFAC yes 29450447 859 118263619
chr1 29451309 29451315 SP1 TRANSFAC yes 29450447 862 118263620
chr1 29451309 29451319 SP1 JASPAR yes 29450447 862 118263621
chr1 29451310 29451320 SP1 JASPAR yes 29450447 863 118263622
chr1 29451313 29451325 TFAP2A JASPAR yes 29450447 866 118263623
chr1 29451314 29451323 TFAP2A JASPAR yes 29450447 867 118263624
chr1 29451325 29451336 NFKB1 JASPAR yes 29450447 878 118263625
chr1 29451338 29451349 NRF1 JASPAR yes 29450447 891 118263626
chr1 29451339 29451351 NHLH1 JASPAR yes 29450447 892 118263627
chr1 29451344 29451353 TFAP2A JASPAR yes 29450447 897 118263628
chr1 29451347 29451357 SP1 JASPAR yes 29450447 900 118263629
chr1 29451348 29451357 SP1 TRANSFAC yes 29450447 901 118263630
chr1 29451348 29451358 SP1 JASPAR yes 29450447 901 118263631
chr1 29451350 29451356 MAZ TRANSFAC yes 29450447 903 118263632
chr1 29451359 29451369 HOXA2 JASPAR yes 29450447 912 118263633
chr1 29451359 29451369 NOTO JASPAR yes 29450447 912 118263634
chr1 29451368 29451380 NHLH1 JASPAR yes 29450447 921 118263635
chr1 29451370 29451381 NRF1 JASPAR yes 29450447 923 118263636
chr1 29451390 29451396 MAZ TRANSFAC yes 29450447 943 118263637
chr1 29451402 29451410 EHF JASPAR yes 29450447 955 118263638
chr1 29451402 29451412 SP1 JASPAR yes 29450447 955 118263639
chr1 29451408 29451416 SP1 TRANSFAC yes 29450447 961 118263640
chr1 29451409 29451414 SP1 TRANSFAC yes 29450447 962 118263641
chr1 29451410 29451415 SP1 TRANSFAC yes 29450447 963 118263642
chr1 29451413 29451428 TFAP2C JASPAR yes 29450447 966 118263643
chr1 29451414 29451426 INSM1 JASPAR yes 29450447 967 118263644
chr1 29451419 29451424 SP1 TRANSFAC yes 29450447 972 118263645
chr1 29451419 29451426 SP1 TRANSFAC yes 29450447 972 118263646
chr1 29451419 29451429 SP1 JASPAR yes 29450447 972 118263647
chr1 29451419 29451437 ESR1 JASPAR yes 29450447 972 118263648
chr1 29451425 29451430 SP1 TRANSFAC yes 29450447 978 118263649
chr1 29451430 29451445 ZIC3 JASPAR yes 29450447 983 118263650
chr1 29451444 29451449 SP1 TRANSFAC yes 29450447 997 118263651
chr1 29451455 29451459 H4TF2 TRANSFAC yes 29450447 1008 118263652
SNPs associated with TMEM200B[ENSG00000253304.1], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 29574551 rs1565713 T C 124104 Esophagus 0.0232311 196437
chr1 29684181 rs36025021 G A 233734 Esophagus 0.256526 196682
chr1 29567412 rs4654395 C T 116965 Heart 0.362213 196359
chr1 29574363 rs1565714 G A 123916 Breast 0.00911211 196435
chr1 28458181 rs72875075 C T 987759 Uterus 0.137971 190216
chr1 28633980 rs370875720 TCG T 811960 Lung 0.263641 191545
Details of TMEM200B[ENSG00000253304.1]
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Genomic Location chr1:29445940-29450447[-]
TSS 29450447
Gene Name TMEM200B
Ensembl ID ENSG00000253304.1
ENTREZID 399474
Uniprot
Q69YZ2
Protein Name
Transmembrane protein 200B
Expression levels of TMEM200B[ENSG00000253304.1]
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