EnhancerDB
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Enhancers that regulate WNT3A[ENSG00000154342.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 228095829 228099979 enh61975 228194752 94773
Esophagus
chr1 228098321 228098415 vista5405 228194752 96337
VISTA
chr1 228100065 228105938 enh50232 228194752 88814
Prostate (RWPE1) Muscle (A673) Large Intestine
chr1 228120145 228126935 enh12738 228194752 67817
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Liver Placenta Lung (PC-9) Uterus
chr1 228124828 228124930 vista5406 228194752 69822
VISTA
chr1 228129918 228134595 enh64199 228194752 60157
Uterus Heart
chr1 228147445 228152035 enh110683 228194752 42717
Cervix (HeLa-S3)
chr1 228157445 228162695 enh89542 228194752 32057
Prostate (RWPE1) Stomach
chr1 228198804 228205894 enh12739 228194752 4052
Prostate (PC-3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Placenta Muscle (Myoblast) Muscle (Myotube)
chr1 228229225 228235795 enh79415 228194752 34473
Lung (PC-9) Prostate (PC-3) Prostate (RWPE1) Epithelial (MCF-7)
chr1 228267485 228277903 enh89543 228194752 72733
Muscle (Myoblast) Uterus Bone (Osteoblast) Prostate (RWPE1)
chr1 228272073 228272409 vista5407 228194752 77321
VISTA
chr1 228273480 228273740 vista5408 228194752 78728
VISTA
chr1 228274281 228274680 vista5409 228194752 79529
VISTA
chr1 228278785 228283246 enh95984 228194752 84033
Bone (Osteoblast) Epithelial (MCF-7)
Transcript facotrs that regulate WNT3A[ENSG00000154342.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 228198988 228199007 REST JASPAR yes 228194752 4236 35897708
chr1 228199002 228199007 ETS2 TRANSFAC yes 228194752 4250 35897709
chr1 228199037 228199057 ESR1 JASPAR yes 228194752 4285 35897710
chr1 228199040 228199058 ESR2 JASPAR yes 228194752 4288 35897711
chr1 228199042 228199057 ESR2 JASPAR yes 228194752 4290 35897712
chr1 228199047 228199057 SP1 JASPAR yes 228194752 4295 35897713
chr1 228199048 228199058 SP1 JASPAR yes 228194752 4296 35897714
chr1 228199059 228199063 YY1 TRANSFAC yes 228194752 4307 35897715
chr1 228199077 228199096 CTCF JASPAR yes 228194752 4325 35897716
chr1 228199093 228199108 JUND JASPAR yes 228194752 4341 35897717
chr1 228199094 228199107 JUN JASPAR yes 228194752 4342 35897718
chr1 228199098 228199119 ZNF263 JASPAR yes 228194752 4346 35897719
chr1 228199102 228199123 ZNF263 JASPAR yes 228194752 4350 35897720
chr1 228199108 228199129 ZNF263 JASPAR yes 228194752 4356 35897721
chr1 228199116 228199121 ETS2 TRANSFAC yes 228194752 4364 35897722
chr1 228199129 228199139 GCM2 JASPAR yes 228194752 4377 35897723
chr1 228199132 228199145 ZBTB18 JASPAR yes 228194752 4380 35897724
chr1 228199138 228199142 NFE TRANSFAC yes 228194752 4386 35897725
chr1 228199149 228199170 IRF1 JASPAR yes 228194752 4397 35897726
chr1 228199152 228199156 NFE TRANSFAC yes 228194752 4400 35897727
chr1 228199159 228199180 ZNF263 JASPAR yes 228194752 4407 35897728
chr1 228199167 228199188 ZNF263 JASPAR yes 228194752 4415 35897729
chr1 228199179 228199183 NFE TRANSFAC yes 228194752 4427 35897730
chr1 228199201 228199207 SOX10 JASPAR yes 228194752 4449 35897731
chr1 228199202 228199223 IRF1 JASPAR yes 228194752 4450 35897732
chr1 228199203 228199216 SMAD2 JASPAR yes 228194752 4451 35897733
chr1 228199206 228199220 IRF8 JASPAR yes 228194752 4454 35897734
chr1 228199221 228199225 NFE TRANSFAC yes 228194752 4469 35897735
chr1 228199221 228199234 SMAD2 JASPAR yes 228194752 4469 35897736
chr1 228199225 228199229 NFE TRANSFAC yes 228194752 4473 35897737
chr1 228199225 228199238 SMAD2 JASPAR yes 228194752 4473 35897738
chr1 228199228 228199243 PRDM1 JASPAR yes 228194752 4476 35897739
chr1 228199228 228199249 ZNF263 JASPAR yes 228194752 4476 35897740
chr1 228199244 228199249 GATA1 TRANSFAC yes 228194752 4492 35897741
chr1 228199248 228199252 NFE TRANSFAC yes 228194752 4496 35897742
chr1 228199264 228199268 NFE TRANSFAC yes 228194752 4512 35897743
chr1 228199270 228199274 NFE TRANSFAC yes 228194752 4518 35897744
chr1 228199270 228199275 GATA1 TRANSFAC yes 228194752 4518 35897745
chr1 228199270 228199276 GATA3 JASPAR yes 228194752 4518 35897746
chr1 228199280 228199293 SMAD2 JASPAR yes 228194752 4528 35897747
chr1 228199283 228199304 IRF1 JASPAR yes 228194752 4531 35897748
chr1 228199284 228199288 NFE TRANSFAC yes 228194752 4532 35897749
chr1 228199284 228199297 SMAD2 JASPAR yes 228194752 4532 35897750
chr1 228199285 228199300 PRDM1 JASPAR yes 228194752 4533 35897751
chr1 228199289 228199310 IRF1 JASPAR yes 228194752 4537 35897752
chr1 228199302 228199308 SOX10 JASPAR yes 228194752 4550 35897753
chr1 228199309 228199313 NFE TRANSFAC yes 228194752 4557 35897754
chr1 228199329 228199333 NFE TRANSFAC yes 228194752 4577 35897755
chr1 228199337 228199341 NFE TRANSFAC yes 228194752 4585 35897756
chr1 228199337 228199342 GATA1 TRANSFAC yes 228194752 4585 35897757
chr1 228199337 228199343 GATA3 JASPAR yes 228194752 4585 35897758
chr1 228199340 228199355 LEF1 JASPAR yes 228194752 4588 35897759
chr1 228199341 228199355 TCF7L2 JASPAR yes 228194752 4589 35897760
chr1 228199353 228199357 NFE TRANSFAC yes 228194752 4601 35897761
chr1 228199361 228199365 NFE TRANSFAC yes 228194752 4609 35897762
chr1 228199386 228199407 REST JASPAR yes 228194752 4634 35897763
chr1 228199387 228199406 REST JASPAR yes 228194752 4635 35897764
chr1 228199406 228199418 PKNOX1 JASPAR yes 228194752 4654 35897765
chr1 228199406 228199418 PKNOX2 JASPAR yes 228194752 4654 35897766
chr1 228199406 228199418 TGIF1 JASPAR yes 228194752 4654 35897767
chr1 228199406 228199418 TGIF2 JASPAR yes 228194752 4654 35897768
chr1 228199411 228199428 BCL6B JASPAR yes 228194752 4659 35897769
chr1 228199422 228199432 HOXB13 JASPAR yes 228194752 4670 35897770
chr1 228199491 228199503 TFAP2A JASPAR yes 228194752 4739 35897771
chr1 228199491 228199506 TFAP2A JASPAR yes 228194752 4739 35897772
chr1 228199491 228199506 TFAP2C JASPAR yes 228194752 4739 35897773
chr1 228199492 228199501 TFAP2A JASPAR yes 228194752 4740 35897774
chr1 228199492 228199503 EBF1 JASPAR yes 228194752 4740 35897775
chr1 228199520 228199529 THAP1 JASPAR yes 228194752 4768 35897776
chr1 228199520 228199535 RUNX2 JASPAR yes 228194752 4768 35897777
chr1 228199523 228199543 RREB1 JASPAR yes 228194752 4771 35897778
chr1 228199524 228199544 RREB1 JASPAR yes 228194752 4772 35897779
chr1 228199535 228199541 SP1 TRANSFAC yes 228194752 4783 35897780
chr1 228199552 228199556 ESR1 TRANSFAC yes 228194752 4800 35897781
chr1 228199561 228199575 TLX1 JASPAR yes 228194752 4809 35897782
chr1 228199568 228199573 ATF1 TRANSFAC yes 228194752 4816 35897783
chr1 228199570 228199579 NKX2-8 JASPAR yes 228194752 4818 35897784
chr1 228199571 228199589 ESR1 JASPAR yes 228194752 4819 35897785
chr1 228199603 228199606 MYB TRANSFAC yes 228194752 4851 35897786
chr1 228199620 228199635 TFAP2A JASPAR yes 228194752 4868 35897787
chr1 228199620 228199635 TFAP2C JASPAR yes 228194752 4868 35897788
chr1 228199623 228199634 TFAP2A JASPAR yes 228194752 4871 35897789
chr1 228199623 228199634 TFAP2B JASPAR yes 228194752 4871 35897790
chr1 228199623 228199634 TFAP2C JASPAR yes 228194752 4871 35897791
chr1 228199645 228199661 ZNF143 JASPAR yes 228194752 4893 35897792
chr1 228199650 228199665 HNF4G JASPAR yes 228194752 4898 35897793
chr1 228199654 228199660 TCF4 TRANSFAC yes 228194752 4902 35897794
chr1 228199678 228199686 TBX15 JASPAR yes 228194752 4926 35897795
chr1 228199678 228199686 TBX4 JASPAR yes 228194752 4926 35897796
chr1 228199704 228199717 TFAP2B JASPAR yes 228194752 4952 35897797
chr1 228199704 228199717 TFAP2C JASPAR yes 228194752 4952 35897798
chr1 228199719 228199725 NFE2 TRANSFAC yes 228194752 4967 35897799
chr1 228199726 228199737 FOS JASPAR yes 228194752 4974 35897800
chr1 228199726 228199737 FOSL1 JASPAR yes 228194752 4974 35897801
chr1 228199726 228199737 JUND JASPAR yes 228194752 4974 35897802
chr1 228199727 228199738 FOSL2 JASPAR yes 228194752 4975 35897803
chr1 228199727 228199738 JUNB JASPAR yes 228194752 4975 35897804
chr1 228199747 228199750 MYB TRANSFAC yes 228194752 4995 35897805
SNPs associated with WNT3A[ENSG00000154342.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 227456913 rs145404541 A C 737839 Breast 0.225333 997014
Details of WNT3A[ENSG00000154342.4]
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Genomic Location chr1:228194752-228248961[+]
TSS 228194752
Gene Name WNT3A
Ensembl ID ENSG00000154342.4
ENTREZID 89780
Uniprot
P56704
Protein Name
Protein Wnt-3a
Expression levels of WNT3A[ENSG00000154342.4]
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