EnhancerDB
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Enhancers that regulate LSM12[ENSG00000161654.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 42045905 42054795 enh92728 42144987 90192
Liver (HepG2) Brain (SK-N-SH)
chr17 42061095 42061375 vista24863 42144987 83612
VISTA
chr17 42061665 42066236 enh44431 42144987 78751
Muscle (Myotube) Peripheral Blood (MM.1S)
chr17 42070385 42079775 enh17178 42144987 65212
Thyroid Placenta Large Intestine
chr17 42100535 42100831 vista24864 42144987 44156
VISTA
chr17 42101631 42102033 vista24865 42144987 42954
VISTA
chr17 42115729 42123816 enh32201 42144987 21171
Prostate (PC-3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Muscle (A673)
chr17 42124945 42132655 enh44432 42144987 12332
Muscle (Myoblast) Muscle (Myotube) Heart
chr17 42158025 42162175 enh110894 42144987 13038
Cervix (HeLa-S3)
chr17 42170662 42193575 enh17179 42144987 25675
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr17 42173050 42173151 vista24866 42144987 28063
VISTA
chr17 42173326 42173627 vista24867 42144987 28339
VISTA
chr17 42174643 42174888 vista24868 42144987 29656
VISTA
chr17 42198947 42199210 vista24869 42144987 53960
VISTA
chr17 42203885 42213635 enh17180 42144987 58898
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Placenta Lung (PC-9) Epithelial (MCF-7)
chr17 42215472 42215904 vista24870 42144987 70485
VISTA
chr17 42234945 42239095 enh91158 42144987 89958
Bone Marrow (K562)
Transcript facotrs that regulate LSM12[ENSG00000161654.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with LSM12[ENSG00000161654.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 42160410 rs117114632 G A 15423 Esophagus 0.0171456 4887829
chr17 41673108 rs1728172 C A,T 438895 Esophagus 0.118746 4884615
chr17 42373339 rs72824718 C G,T 228352 Esophagus 0.0101082 4889225
chr17 42682654 rs8080685 G A 537667 Heart 0.185714 4890878
chr17 41473430 rs34136861 C CA 638573 Breast 0.0919768 4883030
chr17 42127344 rs77292650 C G 0 Spleen 0.000961825 4887700
chr17 42173353 rs116971671 A G 28366 Uterus 0.34622 4887887
chr17 42173752 rs228746 T C 28765 Thyroid 0.00353883 4887889
chr17 41804040 rs73984664 G A 307963 Liver 0.955637 4885964
chr17 42127344 rs77292650 C G 0 Adrenal 0.0954997 4887700
Details of LSM12[ENSG00000161654.5]
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Genomic Location chr17:42112003-42144987[-]
TSS 42144987
Gene Name LSM12
Ensembl ID ENSG00000161654.5
ENTREZID 124801
Uniprot
Q3MHD2
Protein Name
Protein LSM12 homolog
Expression levels of LSM12[ENSG00000161654.5]
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