EnhancerDB
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Enhancers that regulate GPATCH3[ENSG00000198746.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 27122205 27134409 enh26588 27226957 92548
Prostate (PC-3) Astrocyte Bone (Osteoblast) Peripheral Blood (MM.1S) Blood (T-cell)
chr1 27134625 27140735 enh11656 27226957 86222
Placenta Blood (T-cell) Lung (PC-9)
chr1 27154485 27154771 vista885 27226957 72186
VISTA
chr1 27154983 27155478 vista886 27226957 71479
VISTA
chr1 27160002 27160387 vista887 27226957 66570
VISTA
chr1 27163365 27169395 enh92037 27226957 57562
Liver (HepG2) Peripheral Blood (MM.1S) Spleen Blood (T-cell) Stomach
chr1 27165490 27165816 vista888 27226957 61141
VISTA
chr1 27172425 27178155 enh49691 27226957 48802
Prostate (PC-3) Large Intestine Esophagus Lung (PC-9) Epithelial (MCF-7)
chr1 27175784 27176273 vista889 27226957 50684
VISTA
chr1 27184739 27184972 vista890 27226957 41985
VISTA
chr1 27185457 27185720 vista891 27226957 41237
VISTA
chr1 27185755 27186143 vista892 27226957 40814
VISTA
chr1 27191386 27191927 vista893 27226957 35030
VISTA
chr1 27192234 27201210 enh168 27226957 25747
Skin (Keratinocyte) Prostate (PC-3) Esophagus Lung Colon (HCT116) Blood (Karpas-422) Lung (PC-9)
chr1 27206205 27210355 enh92038 27226957 16602
Liver (HepG2)
chr1 27231968 27236534 enh49692 27226957 5011
Prostate (PC-3) Liver (HepG2) Prostate (RWPE1) Large Intestine Colon (HCT116) Lung (PC-9) Pancreas Epithelial (MCF-7)
chr1 27244420 27244792 vista894 27226957 17463
VISTA
chr1 27262605 27267375 enh92039 27226957 35648
Spleen Liver (HepG2)
chr1 27289282 27289295 vista895 27226957 62325
VISTA
chr1 27294965 27301275 enh61818 27226957 68008
Esophagus Liver (HepG2) Stomach
chr1 27301385 27305535 enh109300 27226957 74428
Stomach
chr1 27317684 27338176 enh11657 27226957 90727
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Bone (Osteoblast) Stomach Placenta Colon (HCT116) Thyroid Lung (PC-9) Neural Stem Cells (H9) Heart
chr1 27321452 27321840 vista896 27226957 94495
VISTA
Transcript facotrs that regulate GPATCH3[ENSG00000198746.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with GPATCH3[ENSG00000198746.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 28200760 rs11247701 G A 973803 Esophagus 0.149721 188797
chr1 26901101 rs14071 C T 315878 Pancreas 0.211954 181000
chr1 27883227 rs17162040 T C 656270 Spleen 0.0507553 186851
chr1 26745360 rs11389104 C CA 471619 Ovary 0.254781 180282
chr1 26405392 rs115756596 G A 811587 Uterus 0.435482 178132
chr1 26912381 rs148738782 C T 304598 Thyroid 0.131167 181093
chr1 26913951 rs79521556 A G 303028 Liver 0.127782 181112
chr1 26460618 rs202244285 C CT 756361 Lung 0.011456 178541
chr1 27526369 rs117368515 C T 299412 Stomach 0.375353 184924
chr1 26330927 rs6700571 G A 886052 Adrenal 0.317941 177660
Details of GPATCH3[ENSG00000198746.8]
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Genomic Location chr1:27216979-27226957[-]
TSS 27226957
Gene Name GPATCH3
Ensembl ID ENSG00000198746.8
ENTREZID 63906
Uniprot
Q96I76
Protein Name
G patch domain-containing protein 3
Expression levels of GPATCH3[ENSG00000198746.8]
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