EnhancerDB
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Enhancers that regulate LINC00346[ENSG00000255874.1]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr13 111421645 111425815 enh94229 111522162 96347
Spleen
chr13 111429465 111433615 enh112283 111522162 88547
Brain (SK-N-MC)
chr13 111449605 111454455 enh15503 111522162 67707
Pancreas Placenta Uterus
chr13 111460271 111465494 enh68638 111522162 56668
Neural Stem Cells (H9) Embryonic Stem Cell Line (H1-hESC) Epithelial (MCF-7)
chr13 111464605 111464817 vista17072 111522162 57345
VISTA
chr13 111465805 111474068 enh88072 111522162 48094
Ovary Pancreas (Panc1) Lung (PC-9) Pancreas Spleen Stomach
chr13 111492305 111496455 enh80720 111522162 25707
Prostate (PC-3)
chr13 111500205 111511995 enh15504 111522162 10167
Muscle (Myoblast) Placenta Uterus Peripheral Blood (MM.1S)
chr13 111526935 111527249 vista17073 111522162 4773
VISTA
chr13 111536374 111543820 enh64757 111522162 14212
Colon (HCT116) Uterus Embryonic Stem Cell Line (H1-hESC) Neural Stem Cells (H9) Heart
chr13 111544033 111544176 vista17074 111522162 21871
VISTA
chr13 111558301 111562815 enh68639 111522162 36139
Muscle (A673) Neural Stem Cells (H9) Stomach
chr13 111560939 111561133 vista17075 111522162 38777
VISTA
chr13 111564894 111565358 vista17076 111522162 42732
VISTA
chr13 111568618 111569036 vista17077 111522162 46456
VISTA
chr13 111589420 111590157 vista17078 111522162 67258
VISTA
chr13 111593065 111600515 enh15505 111522162 70903
Bone Marrow (K562) Prostate (PC-3) Esophagus Astrocyte Placenta Colon (HCT116) Breast Lung (PC-9) Pancreas Spleen Heart
chr13 111594578 111594832 vista17079 111522162 72416
VISTA
chr13 111595123 111595236 vista17080 111522162 72961
VISTA
chr13 111597919 111598063 vista17081 111522162 75757
VISTA
chr13 111602443 111627970 enh15506 111522162 80281
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Lung (A549) Placenta Colon (HCT116) Lung (PC-9) Pancreas Uterus
chr13 111607450 111607830 vista17082 111522162 85288
VISTA
chr13 111609846 111610157 vista17083 111522162 87684
VISTA
chr13 111616634 111616920 vista17084 111522162 94472
VISTA
Transcript facotrs that regulate LINC00346[ENSG00000255874.1]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr13 111526448 111527078 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 111522162 4286 108089872
chr13 111526556 111526939 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 111522162 4394 108089873
chr13 111526641 111526945 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 111522162 4479 108089874
chr13 111526847 111527303 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 111522162 4685 108089875
chr13 111526886 111527382 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 111522162 4724 108089876
chr13 111526887 111527277 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 111522162 4725 108089877
chr13 111526897 111527106 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 111522162 4735 108089878
chr13 111526919 111527299 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 111522162 4757 108089879
chr13 111526958 111527354 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 111522162 4796 108089880
chr13 111526965 111526979 PLAG1 JASPAR yes 111522162 4803 19344019
chr13 111526982 111526987 SP1 TRANSFAC yes 111522162 4820 19344020
chr13 111526982 111526988 SP1 TRANSFAC yes 111522162 4820 19344021
chr13 111526984 111527320 E2F4 UCSC Txn Factor no Conserved 111522162 4822 108089881
chr13 111526984 111527320 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 111522162 4822 108089882
chr13 111526993 111527003 SP1 JASPAR yes 111522162 4831 19344022
chr13 111527000 111527007 SP1 TRANSFAC yes 111522162 4838 19344023
chr13 111527001 111527006 SP1 TRANSFAC yes 111522162 4839 19344024
chr13 111527001 111527007 SP1 TRANSFAC yes 111522162 4839 19344025
chr13 111527018 111527212 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 111522162 4856 108089883
chr13 111527041 111527531 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 111522162 4879 108089884
chr13 111527050 111527056 MZF1 JASPAR yes 111522162 4888 19344026
chr13 111527050 111527571 STAT1 UCSC Txn Factor no Conserved 111522162 4888 108089885
chr13 111527062 111527338 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 111522162 4900 108089886
chr13 111527074 111527079 SP1 TRANSFAC yes 111522162 4912 19344027
chr13 111527074 111527430 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 111522162 4912 108089887
chr13 111527078 111527438 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 111522162 4916 108089888
chr13 111527083 111527104 ZNF263 JASPAR yes 111522162 4921 19344028
chr13 111527084 111527094 ZNF740 JASPAR yes 111522162 4922 19344029
chr13 111527084 111527105 ZNF263 JASPAR yes 111522162 4922 19344030
chr13 111527087 111527097 SP1 JASPAR yes 111522162 4925 19344031
chr13 111527088 111527098 SP1 JASPAR yes 111522162 4926 19344032
chr13 111527092 111527103 E2F4 JASPAR yes 111522162 4930 19344033
chr13 111527092 111527113 ZNF263 JASPAR yes 111522162 4930 19344034
chr13 111527094 111527104 SP1 JASPAR yes 111522162 4932 19344035
chr13 111527095 111527101 SP1 TRANSFAC yes 111522162 4933 19344036
chr13 111527095 111527105 SP1 JASPAR yes 111522162 4933 19344037
chr13 111527096 111527103 SP1 TRANSFAC yes 111522162 4934 19344038
chr13 111527097 111527102 SP1 TRANSFAC yes 111522162 4935 19344039
chr13 111527097 111527103 SP1 TRANSFAC yes 111522162 4935 19344040
chr13 111527097 111527571 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 111522162 4935 108089889
chr13 111527098 111527112 PLAG1 JASPAR yes 111522162 4936 19344041
chr13 111527099 111527110 NRF1 JASPAR yes 111522162 4937 19344042
chr13 111527114 111527232 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 111522162 4952 108089890
chr13 111527118 111527129 E2F4 JASPAR yes 111522162 4956 19344043
chr13 111527118 111527129 E2F6 JASPAR yes 111522162 4956 19344044
chr13 111527119 111527130 E2F1 JASPAR yes 111522162 4957 19344045
chr13 111527123 111527128 SP1 TRANSFAC yes 111522162 4961 19344046
chr13 111527146 111527157 NRF1 JASPAR yes 111522162 4984 19344047
chr13 111527152 111527163 NRF1 JASPAR yes 111522162 4990 19344048
chr13 111527153 111527164 NRF1 JASPAR yes 111522162 4991 19344049
chr13 111527161 111527170 SP1 TRANSFAC yes 111522162 4999 19344050
chr13 111527162 111527168 SP1 TRANSFAC yes 111522162 5000 19344051
chr13 111527162 111527172 SP1 JASPAR yes 111522162 5000 19344052
SNPs associated with LINC00346[ENSG00000255874.1], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr13 111522420 rs2277424 C T 258 Esophagus 0.00546342 3398291
chr13 111522420 rs2277424 C T 258 Esophagus 0.28596 3398291
chr13 111522420 rs2277424 C T 258 Heart 0.00449718 3398291
chr13 111522420 rs2277424 C T 258 Breast 0.0428245 3398291
chr13 111059285 rs79551215 T A,C 462293 Spleen 0.451682 3394325
chr13 110593431 rs71942413 CTT C 928147 Ovary 0.423357 3389086
chr13 111870722 rs1164267 G A 348560 Uterus 0.392559 3400776
chr13 111522420 rs2277424 C T 258 Thyroid 0.03137 3398291
chr13 111039784 rs4359307 G C 481794 Lung 0.203841 3394038
chr13 110959705 rs7990017 C T 561873 Adrenal 0.222819 3392798
Details of LINC00346[ENSG00000255874.1]
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Genomic Location chr13:111521578-111522162[-]
TSS 111522162
Gene Name LINC00346
Ensembl ID ENSG00000255874.1
ENTREZID 283487
Uniprot
Protein Name
Putative uncharacterized protein encoded by LINC00346
Expression levels of LINC00346[ENSG00000255874.1]
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