EnhancerDB
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Enhancers that regulate VPS13D[ENSG00000048707.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 12188825 12195567 enh11506 12290124 94557
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Prostate (RWPE1) Esophagus Bone (Osteoblast) Lung Stomach Placenta Lung (PC-9) Pancreas (Panc1) Uterus Blood (T-cell) Heart
chr1 12193120 12193399 vista382 12290124 96725
VISTA
chr1 12196945 12220680 enh11507 12290124 69444
Prostate (PC-3) Large Intestine Ovary Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Stomach Placenta Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Uterus Thymus Heart
chr1 12210430 12211346 vista383 12290124 78778
VISTA
chr1 12213128 12213883 vista384 12290124 76241
VISTA
chr1 12217829 12218258 vista385 12290124 71866
VISTA
chr1 12221931 12222397 vista386 12290124 67727
VISTA
chr1 12225396 12225718 vista387 12290124 64406
VISTA
chr1 12227833 12229578 vista388 12290124 60546
VISTA
chr1 12228245 12248275 enh11508 12290124 41849
Bone Marrow (K562) Cervix (HeLa-S3) Large Intestine Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Lung Blood (GM12878) Stomach Placenta Pancreas Uterus Thymus Heart
chr1 12231693 12231881 vista389 12290124 58243
VISTA
chr1 12232096 12232448 vista390 12290124 57676
VISTA
chr1 12233600 12234159 vista391 12290124 55965
VISTA
chr1 12235070 12235463 vista392 12290124 54661
VISTA
chr1 12236326 12236421 vista393 12290124 53703
VISTA
chr1 12237719 12238747 vista394 12290124 51377
VISTA
chr1 12238984 12239461 vista395 12290124 50663
VISTA
chr1 12240401 12240902 vista396 12290124 49222
VISTA
chr1 12243852 12244671 vista397 12290124 45453
VISTA
chr1 12245348 12245387 vista398 12290124 44737
VISTA
chr1 12254319 12266475 enh11509 12290124 23649
Placenta Thymus Blood (T-cell) Blood (GM12878)
chr1 12276685 12280835 enh90650 12290124 9289
Bone Marrow (K562)
chr1 12354794 12359080 enh26534 12290124 64670
Prostate (PC-3) Astrocyte Muscle (Myotube) Bone (Osteoblast)
chr1 12373305 12377455 enh11510 12290124 83181
Placenta
Transcript facotrs that regulate VPS13D[ENSG00000048707.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with VPS13D[ENSG00000048707.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 12540763 rs2206321 A G 0 Esophagus 0.0446337 85819
chr1 11874249 rs61776077 G A 415875 Esophagus 0.0137035 81169
chr1 11435709 rs79736334 T A 854415 Pancreas 0.0205128 78900
chr1 11949640 rs61527718 C A,T 340484 Breast 0.378319 81570
chr1 11992491 rs111879548 C T 297633 Uterus 0.22172 82213
chr1 12153733 rs693708 T C,G 136391 Liver 0.420584 83909
Details of VPS13D[ENSG00000048707.9]
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Genomic Location chr1:12290124-12572099[+]
TSS 12290124
Gene Name VPS13D
Ensembl ID ENSG00000048707.9
ENTREZID 55187
Uniprot
Q5THJ4
Protein Name
Vacuolar protein sorting 13 homolog D
Vacuolar protein sorting-associated protein 13D
Expression levels of VPS13D[ENSG00000048707.9]
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