EnhancerDB
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Enhancers that regulate RNF4[ENSG00000063978.11]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr4 2361205 2365355 enh54559 2463947 98592
Large Intestine
chr4 2365260 2365459 vista43915 2463947 98488
VISTA
chr4 2366045 2371375 enh7847 2463947 92572
Blood (Karpas-422)
chr4 2375085 2379235 enh91524 2463947 84712
Bone Marrow (K562)
chr4 2382625 2387115 enh91525 2463947 76832
Bone Marrow (K562)
chr4 2384521 2384810 vista43916 2463947 79137
VISTA
chr4 2385582 2385754 vista43917 2463947 78193
VISTA
chr4 2388545 2399595 enh7848 2463947 64352
Bone Marrow (K562) Brain (SK-N-SH) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas Muscle (Myotube)
chr4 2389037 2389223 vista43918 2463947 74724
VISTA
chr4 2389711 2390014 vista43919 2463947 73933
VISTA
chr4 2390218 2390416 vista43920 2463947 73531
VISTA
chr4 2392234 2392240 vista43921 2463947 71707
VISTA
chr4 2400685 2408264 enh54560 2463947 55683
Bone Marrow (K562) Brain (SK-N-SH) Large Intestine Colon (HCT116) Pancreas Epithelial (MCF-7)
chr4 2403922 2404158 vista43922 2463947 59789
VISTA
chr4 2408396 2418535 enh21308 2463947 45412
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Bone (Osteoblast) Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Uterus Thymus Heart
chr4 2413768 2414486 vista43923 2463947 49461
VISTA
chr4 2414575 2415364 vista43924 2463947 48583
VISTA
chr4 2415721 2415975 vista43925 2463947 47972
VISTA
chr4 2432580 2437494 enh102736 2463947 26453
Bone (Osteoblast)
chr4 2475505 2490855 enh7849 2463947 11558
Liver (HepG2) Large Intestine Blood (T-cell) Liver Blood (OCI-LY7) Blood (GM12878) Stomach Muscle (A673) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Thymus Heart
chr4 2537711 2538436 vista43926 2463947 73764
VISTA
chr4 2538945 2539718 vista43927 2463947 74998
VISTA
chr4 2540205 2547595 enh77201 2463947 76258
Muscle (A673) Liver (HepG2)
chr4 2559342 2563492 enh71067 2463947 95395
Neural Stem Cells (H9)
Transcript facotrs that regulate RNF4[ENSG00000063978.11]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with RNF4[ENSG00000063978.11], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr4 2476710 rs113717693 C T 0 Esophagus 0.0124665 7352583
chr4 2637560 rs34626871 C T 10513 Esophagus 0.195319 7353464
chr4 3309384 rs41347150 G A 682337 Heart 0.0328929 7356685
chr4 2412966 rs138632477 GT G 50981 Pancreas 0.00194604 7352303
chr4 2490698 rs3108493 A C,T 0 Breast 0.078464 7352789
chr4 2481492 rs11734497 C G 0 Spleen 0.000807702 7352662
Details of RNF4[ENSG00000063978.11]
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Genomic Location chr4:2463947-2627047[+]
TSS 2463947
Gene Name RNF4
Ensembl ID ENSG00000063978.11
ENTREZID 6047
Uniprot
P78317
Protein Name
isoform CRA_a
E3 ubiquitin-protein ligase RNF4
Ring finger protein 4
Expression levels of RNF4[ENSG00000063978.11]
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