EnhancerDB
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Enhancers that regulate TMED1[ENSG00000099203.2]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 10832365 10873258 enh5002 10946994 73736
Bone Marrow (K562) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr19 10862011 10862152 vista28600 10946994 84842
VISTA
chr19 10863039 10863158 vista28601 10946994 83836
VISTA
chr19 10865897 10866291 vista28602 10946994 80703
VISTA
chr19 10874125 10883015 enh65173 10946994 63979
Thyroid Epithelial (MCF-7) Heart
chr19 10884970 10890583 enh60748 10946994 56411
Blood (OCI-LY7)
chr19 10898645 10902795 enh52845 10946994 44199
Large Intestine
chr19 10918125 10930655 enh17917 10946994 16339
Bone Marrow (K562) Astrocyte Bone (Osteoblast) Placenta Uterus Blood (T-cell) Stomach
chr19 10925932 10926095 vista28603 10946994 20899
VISTA
chr19 10928296 10928707 vista28604 10946994 18287
VISTA
chr19 10949257 10949551 vista28605 10946994 2263
VISTA
chr19 10955666 10955680 vista28606 10946994 8672
VISTA
chr19 10983266 10983642 vista28607 10946994 36272
VISTA
chr19 10983285 11012541 enh5003 10946994 36291
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr19 10983653 10983862 vista28608 10946994 36659
VISTA
chr19 10987245 10987998 vista28609 10946994 40251
VISTA
chr19 10988040 10988081 vista28610 10946994 41046
VISTA
chr19 10989126 10989500 vista28611 10946994 42132
VISTA
chr19 10992105 10992492 vista28612 10946994 45111
VISTA
chr19 10999263 10999360 vista28613 10946994 52269
VISTA
chr19 11044165 11061272 enh17918 10946994 97171
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Pancreas Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr19 11044199 11044446 vista28614 10946994 97205
VISTA
Transcript facotrs that regulate TMED1[ENSG00000099203.2]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 10949022 10949426 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 10946994 2028 108384140
chr19 10949031 10949387 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 10946994 2037 108384141
chr19 10949086 10949446 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 10946994 2092 108384142
chr19 10949088 10949464 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 10946994 2094 108384143
chr19 10949099 10949409 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 10946994 2105 108384144
chr19 10949105 10949545 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 10946994 2111 108384145
chr19 10949172 10949331 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 10946994 2178 108384146
chr19 10949266 10949279 SMAD2 JASPAR yes 10946994 2272 70803211
chr19 10949266 10949280 TLX1 JASPAR yes 10946994 2272 70803212
chr19 10949282 10949297 HNF4A JASPAR yes 10946994 2288 70803213
chr19 10949325 10949335 BARHL2 JASPAR yes 10946994 2331 70803214
chr19 10949328 10949338 HOXB13 JASPAR yes 10946994 2334 70803215
chr19 10949393 10949397 H4TF2 TRANSFAC yes 10946994 2399 70803216
chr19 10949447 10949460 POU2F2 JASPAR yes 10946994 2453 70803217
chr19 10949447 10949461 POU1F1 JASPAR yes 10946994 2453 70803218
chr19 10949448 10949460 POU3F1 JASPAR yes 10946994 2454 70803219
chr19 10949448 10949460 POU3F2 JASPAR yes 10946994 2454 70803220
chr19 10949449 10949461 POU2F1 JASPAR yes 10946994 2455 70803221
chr19 10949450 10949459 POU3F4 JASPAR yes 10946994 2456 70803222
chr19 10949450 10949459 POU5F1B JASPAR yes 10946994 2456 70803223
chr19 10949451 10949459 FOXL1 JASPAR yes 10946994 2457 70803224
chr19 10949467 10949479 GRHL1 JASPAR yes 10946994 2473 70803225
chr19 10949468 10949478 TFCP2 JASPAR yes 10946994 2474 70803226
chr19 10949468 10949488 TP63 JASPAR yes 10946994 2474 70803227
chr19 10949479 10949488 SNAI2 JASPAR yes 10946994 2485 70803228
chr19 10949479 10949489 FIGLA JASPAR yes 10946994 2485 70803229
chr19 10949479 10949489 ID4 JASPAR yes 10946994 2485 70803230
chr19 10949479 10949489 MSC JASPAR yes 10946994 2485 70803231
chr19 10949479 10949489 MYF6 JASPAR yes 10946994 2485 70803232
chr19 10949479 10949489 TCF3 JASPAR yes 10946994 2485 70803233
chr19 10949479 10949489 TCF4 JASPAR yes 10946994 2485 70803234
chr19 10949481 10949490 ZEB1 JASPAR yes 10946994 2487 70803235
chr19 10949488 10949501 POU2F2 JASPAR yes 10946994 2494 70803236
chr19 10949488 10949502 POU1F1 JASPAR yes 10946994 2494 70803237
chr19 10949489 10949501 POU3F1 JASPAR yes 10946994 2495 70803238
chr19 10949489 10949501 POU3F2 JASPAR yes 10946994 2495 70803239
chr19 10949490 10949494 YY1 TRANSFAC yes 10946994 2496 70803240
chr19 10949490 10949502 POU2F1 JASPAR yes 10946994 2496 70803241
chr19 10949491 10949498 POU2F1 TRANSFAC yes 10946994 2497 70803242
chr19 10949491 10949498 POU2F2C TRANSFAC yes 10946994 2497 70803243
chr19 10949491 10949498 POU2F2 TRANSFAC yes 10946994 2497 70803244
chr19 10949491 10949499 POU2F1 TRANSFAC yes 10946994 2497 70803245
chr19 10949491 10949500 POU3F4 JASPAR yes 10946994 2497 70803246
chr19 10949491 10949500 POU5F1B JASPAR yes 10946994 2497 70803247
chr19 10949499 10949509 TBX21 JASPAR yes 10946994 2505 70803248
chr19 10949499 10949510 TBX20 JASPAR yes 10946994 2505 70803249
chr19 10949499 10949510 TBX2 JASPAR yes 10946994 2505 70803250
chr19 10949499 10949512 EOMES JASPAR yes 10946994 2505 70803251
chr19 10949500 10949508 MGA JASPAR yes 10946994 2506 70803252
chr19 10949500 10949508 TBX15 JASPAR yes 10946994 2506 70803253
chr19 10949500 10949508 TBX1 JASPAR yes 10946994 2506 70803254
chr19 10949500 10949508 TBX4 JASPAR yes 10946994 2506 70803255
chr19 10949500 10949508 TBX5 JASPAR yes 10946994 2506 70803256
chr19 10949500 10949510 TBR1 JASPAR yes 10946994 2506 70803257
chr19 10949509 10949524 HSF1 JASPAR yes 10946994 2515 70803258
chr19 10949515 10949520 GATA1 TRANSFAC yes 10946994 2521 70803259
chr19 10949520 10949535 HNF1A JASPAR yes 10946994 2526 70803260
chr19 10949521 10949534 HNF1B JASPAR yes 10946994 2527 70803261
chr19 10949525 10949541 POU4F2 JASPAR yes 10946994 2531 70803262
chr19 10949525 10949541 POU4F3 JASPAR yes 10946994 2531 70803263
chr19 10949527 10949541 POU4F1 JASPAR yes 10946994 2533 70803264
chr19 10949528 10949537 CDX1 JASPAR yes 10946994 2534 70803265
SNPs associated with TMED1[ENSG00000099203.2], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr19 11003361 rs1123488 C T 56367 Esophagus 0.322519 5439766
chr19 10497360 rs74428614 G A 445754 Esophagus 0.00971276 5436261
chr19 10993295 rs36045835 G A 46301 Heart 0.300212 5439624
chr19 10023639 rs78415745 G A 919475 Uterus 0.768861 5433649
Details of TMED1[ENSG00000099203.2]
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Genomic Location chr19:10943114-10946994[-]
TSS 10946994
Gene Name TMED1
Ensembl ID ENSG00000099203.2
ENTREZID 11018
Uniprot
Q13445
Protein Name
Transmembrane emp24 domain-containing protein 1
Expression levels of TMED1[ENSG00000099203.2]
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