EnhancerDB
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Enhancers that regulate RPA2[ENSG00000117748.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 28143878 28144081 vista954 28241257 97176
VISTA
chr1 28152962 28153213 vista955 28241257 88044
VISTA
chr1 28182518 28193279 enh179 28241257 47978
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung Blood (GM12878) Stomach Placenta Thyroid Blood (Karpas-422) Lung (PC-9) Pancreas Blood (T-cell) Epithelial (MCF-7)
chr1 28189568 28190269 vista956 28241257 50988
VISTA
chr1 28190756 28191157 vista957 28241257 50100
VISTA
chr1 28195628 28196024 vista958 28241257 45233
VISTA
chr1 28199684 28200598 vista959 28241257 40659
VISTA
chr1 28201800 28202156 vista960 28241257 39101
VISTA
chr1 28204631 28205027 vista961 28241257 36230
VISTA
chr1 28211714 28216890 enh60106 28241257 24367
Blood (T-cell) Blood (OCI-LY7)
chr1 28213825 28214033 vista962 28241257 27224
VISTA
chr1 28216942 28217199 vista963 28241257 24058
VISTA
chr1 28229087 28233335 enh11673 28241257 7922
Placenta Bone (Osteoblast)
chr1 28238886 28239222 vista964 28241257 2035
VISTA
chr1 28268335 28268431 vista965 28241257 27078
VISTA
chr1 28269913 28270209 vista966 28241257 28656
VISTA
chr1 28291369 28295443 enh94810 28241257 50112
Muscle (Myoblast)
chr1 28304225 28309915 enh74165 28241257 62968
Muscle (A673)
chr1 28305616 28305920 vista967 28241257 64359
VISTA
chr1 28315545 28319695 enh107374 28241257 74288
Blood (T-cell)
chr1 28318645 28318992 vista968 28241257 77388
VISTA
chr1 28331285 28335435 enh87588 28241257 90028
Pancreas
Transcript facotrs that regulate RPA2[ENSG00000117748.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 28235024 28240490 ZNF274 GTRD no Blood (GM12878) 28241257 767 107802628
chr1 28238887 28238902 FOXP1 JASPAR yes 28241257 2355 118260940
chr1 28238888 28238894 TBP TRANSFAC yes 28241257 2363 118260941
chr1 28238888 28238903 FOXP1 JASPAR yes 28241257 2354 118260942
chr1 28238888 28238909 IRF1 JASPAR yes 28241257 2348 118260943
chr1 28238889 28238904 FOXP1 JASPAR yes 28241257 2353 118260944
chr1 28238889 28238910 IRF1 JASPAR yes 28241257 2347 118260945
chr1 28238890 28238905 FOXP1 JASPAR yes 28241257 2352 118260946
chr1 28238892 28238907 FOXP1 JASPAR yes 28241257 2350 118260947
chr1 28238893 28238908 STAT2 JASPAR yes 28241257 2349 118260948
chr1 28238894 28238909 FOXP1 JASPAR yes 28241257 2348 118260949
chr1 28238897 28238908 FOXP2 JASPAR yes 28241257 2349 118260950
chr1 28238901 28238907 HiNF-A TRANSFAC yes 28241257 2350 118260951
chr1 28238941 28238953 TAL1 JASPAR yes 28241257 2304 118260952
chr1 28238942 28238954 NHLH1 JASPAR yes 28241257 2303 118260953
chr1 28238943 28238953 MSC JASPAR yes 28241257 2304 118260954
chr1 28238943 28238953 NHLH1 JASPAR yes 28241257 2304 118260955
chr1 28238943 28238953 TFAP4 JASPAR yes 28241257 2304 118260956
chr1 28238961 28238979 ESR1 JASPAR yes 28241257 2278 118260957
chr1 28238963 28238971 TBX15 JASPAR yes 28241257 2286 118260958
chr1 28238964 28238969 SP1 TRANSFAC yes 28241257 2288 118260959
chr1 28238991 28238995 H4TF2 TRANSFAC yes 28241257 2262 118260960
chr1 28239014 28239033 PAX5 JASPAR yes 28241257 2224 118260961
chr1 28239049 28239053 NFE TRANSFAC yes 28241257 2204 118260962
chr1 28239073 28239077 YY1 TRANSFAC yes 28241257 2180 118260963
chr1 28239082 28239089 JUN TRANSFAC yes 28241257 2168 118260964
chr1 28239091 28239095 YY1 TRANSFAC yes 28241257 2162 118260965
chr1 28239111 28239126 FOXP1 JASPAR yes 28241257 2131 118260966
chr1 28239112 28239121 SRY JASPAR yes 28241257 2136 118260967
chr1 28239112 28239123 FOXP2 JASPAR yes 28241257 2134 118260968
chr1 28239112 28239124 FOXC2 JASPAR yes 28241257 2133 118260969
chr1 28239114 28239122 FOXO3 JASPAR yes 28241257 2135 118260970
chr1 28239131 28239142 FOSL1 JASPAR yes 28241257 2115 118260971
chr1 28239131 28239149 MAFF JASPAR yes 28241257 2108 118260972
chr1 28239132 28239143 FOSL2 JASPAR yes 28241257 2114 118260973
chr1 28239132 28239143 JUNB JASPAR yes 28241257 2114 118260974
chr1 28239132 28239146 JUN JASPAR yes 28241257 2111 118260975
chr1 28239132 28239146 PAX6 JASPAR yes 28241257 2111 118260976
chr1 28239132 28239147 MAFK JASPAR yes 28241257 2110 118260977
chr1 28239133 28239144 BATF JASPAR yes 28241257 2113 118260978
chr1 28239141 28239156 STAT1 JASPAR yes 28241257 2101 118260979
chr1 28239143 28239154 STAT1 JASPAR yes 28241257 2103 118260980
chr1 28239143 28239154 STAT3 JASPAR yes 28241257 2103 118260981
chr1 28239172 28239183 GCM1 JASPAR yes 28241257 2074 118260982
chr1 28239193 28239208 HNF4G JASPAR yes 28241257 2049 118260983
chr1 28239194 28239209 HNF4A JASPAR yes 28241257 2048 118260984
SNPs associated with RPA2[ENSG00000117748.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 28241083 rs17185052 G A 0 Esophagus 6.60568e-72 189060
chr1 28241083 rs17185052 G A 0 Breast 2.31897e-40 189060
chr1 28241083 rs17185052 G A 0 Thyroid 3.78314e-98 189060
chr1 28241083 rs17185052 G A 0 Lung 1.28085e-61 189060
chr1 28241083 rs17185052 G A 0 Stomach 1.73925e-29 189060
Details of RPA2[ENSG00000117748.5]
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Genomic Location chr1:28218035-28241257[-]
TSS 28241257
Gene Name RPA2
Ensembl ID ENSG00000117748.5
ENTREZID 6118
Uniprot
P15927
B4DUL2
Protein Name
Replication protein A 32 kDa subunit
Expression levels of RPA2[ENSG00000117748.5]
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