EnhancerDB
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Enhancers that regulate RAB3GAP2[ENSG00000118873.11]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 220347108 220347461 vista5151 220445796 98335
VISTA
chr1 220359525 220359939 vista5152 220445796 85857
VISTA
chr1 220370825 220374975 enh79382 220445796 70821
Prostate (PC-3)
chr1 220393257 220393560 vista5153 220445796 52236
VISTA
chr1 220393912 220394294 vista5154 220445796 51502
VISTA
chr1 220394565 220402355 enh937 220445796 43441
Neural Stem Cells (H9) Blood (Karpas-422)
chr1 220399770 220399931 vista5155 220445796 45865
VISTA
chr1 220406845 220411015 enh79383 220445796 34781
Prostate (PC-3) Epithelial (MCF-7)
chr1 220412785 220416935 enh938 220445796 28861
Blood (Karpas-422)
chr1 220427006 220427444 vista5156 220445796 18352
VISTA
chr1 220443411 220443639 vista5157 220445796 2157
VISTA
chr1 220461624 220465774 enh67283 220445796 15828
Neural Stem Cells (H9)
chr1 220466225 220478595 enh12679 220445796 20429
Bone Marrow (K562) Cervix (HeLa-S3) Brain (SK-N-SH) Astrocyte Lung Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myotube) Neural Stem Cells (H9)
chr1 220486845 220490995 enh101169 220445796 41049
Thyroid
chr1 220496725 220502235 enh79384 220445796 50929
Prostate (PC-3) Peripheral Blood (MM.1S) Lung (PC-9) Epithelial (MCF-7)
chr1 220507105 220520135 enh12680 220445796 61309
Skin (Keratinocyte) Prostate (RWPE1) Esophagus Placenta Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Neural Stem Cells (H9) Epithelial (MCF-7)
chr1 220510650 220511010 vista5158 220445796 64854
VISTA
chr1 220512278 220512401 vista5159 220445796 66482
VISTA
chr1 220521385 220525535 enh67284 220445796 75589
Neural Stem Cells (H9)
chr1 220528773 220533504 enh64183 220445796 82977
Heart
chr1 220534493 220550315 enh12681 220445796 88697
Prostate (PC-3) Kidney Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Brain (SK-N-MC) Esophagus Astrocyte Brain (SK-N-SH) Bone (Osteoblast) Muscle (A673) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript facotrs that regulate RAB3GAP2[ENSG00000118873.11]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 220443422 220443436 ONECUT3 JASPAR yes 220445796 2360 118461199
chr1 220443423 220443439 NFYA JASPAR yes 220445796 2357 118461200
chr1 220443424 220443442 NFYA JASPAR yes 220445796 2354 118461201
chr1 220443427 220443442 MAFK JASPAR yes 220445796 2354 118461202
chr1 220443428 220443432 H1TF2 TRANSFAC yes 220445796 2364 118461203
chr1 220443428 220443432 NFE TRANSFAC yes 220445796 2364 118461204
chr1 220443428 220443432 SRF TRANSFAC yes 220445796 2364 118461205
chr1 220443428 220443442 POU1F1 JASPAR yes 220445796 2354 118461206
chr1 220443429 220443442 POU3F3 JASPAR yes 220445796 2354 118461207
chr1 220443436 220443440 YY1 TRANSFAC yes 220445796 2356 118461208
chr1 220443443 220443447 NFE TRANSFAC yes 220445796 2349 118461209
chr1 220443444 220443449 GATA2 JASPAR yes 220445796 2347 118461210
chr1 220443455 220443468 NR2F1 JASPAR yes 220445796 2328 118461211
chr1 220443471 220443475 YY1 TRANSFAC yes 220445796 2321 118461212
chr1 220443477 220443495 MAFF JASPAR yes 220445796 2301 118461213
chr1 220443479 220443490 NRL JASPAR yes 220445796 2306 118461214
chr1 220443479 220443494 MAFK JASPAR yes 220445796 2302 118461215
chr1 220443516 220443524 EHF JASPAR yes 220445796 2272 118461216
chr1 220443541 220443552 USF2 JASPAR yes 220445796 2244 118461217
chr1 220443542 220443552 TFEB JASPAR yes 220445796 2244 118461218
chr1 220443542 220443552 TFEC JASPAR yes 220445796 2244 118461219
chr1 220443550 220443564 SPIC JASPAR yes 220445796 2232 118461220
chr1 220443551 220443572 IRF1 JASPAR yes 220445796 2224 118461221
chr1 220443551 220443572 ZNF263 JASPAR yes 220445796 2224 118461222
chr1 220443553 220443560 SPIB JASPAR yes 220445796 2236 118461223
chr1 220443553 220443574 IRF1 JASPAR yes 220445796 2222 118461224
chr1 220443554 220443575 ZNF263 JASPAR yes 220445796 2221 118461225
chr1 220443557 220443578 ZNF263 JASPAR yes 220445796 2218 118461226
chr1 220443566 220443587 ZNF263 JASPAR yes 220445796 2209 118461227
chr1 220443567 220443588 ZNF263 JASPAR yes 220445796 2208 118461228
chr1 220443583 220443598 RFX5 JASPAR yes 220445796 2198 118461229
chr1 220443591 220443594 MYB TRANSFAC yes 220445796 2202 118461230
SNPs associated with RAB3GAP2[ENSG00000118873.11], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 220092942 rs200536096 AC A 228693 Esophagus 0.00454984 958117
chr1 220579458 rs11584853 T C 133662 Heart 0.21355 960218
chr1 221013876 rs7549725 T C 568080 Heart 0.252535 962273
chr1 220941444 rs11118598 G A 495648 Pancreas 0.0816611 961726
chr1 220888461 rs2960544 T C 442665 Liver 0.260809 961564
chr1 220264450 rs142796382 T A 57185 Stomach 0.177976 958702
Details of RAB3GAP2[ENSG00000118873.11]
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Genomic Location chr1:220321635-220445796[-]
TSS 220445796
Gene Name RAB3GAP2
Ensembl ID ENSG00000118873.11
ENTREZID 25782
Uniprot
Q9H2M9
Protein Name
Rab3 GTPase-activating protein non-catalytic subunit
Expression levels of RAB3GAP2[ENSG00000118873.11]
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