EnhancerDB
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Enhancers that regulate GINS2[ENSG00000131153.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr16 85541745 85623813 enh16872 85723679 99866
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr16 85623714 85624085 vista23333 85723679 99594
VISTA
chr16 85624385 85629675 enh75855 85723679 94004
Muscle (A673)
chr16 85631618 85639631 enh16873 85723679 84048
Brain (SK-N-SH) Placenta Colon (HCT116) Pancreas Heart Stomach
chr16 85640485 85664563 enh16874 85723679 59116
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Liver Stomach Muscle (A673) Placenta Embryonic Stem Cell Line (H1-hESC) Pancreas Muscle (Myotube) Uterus Blood (T-cell) Heart
chr16 85648720 85648939 vista23334 85723679 74740
VISTA
chr16 85650361 85650613 vista23335 85723679 73066
VISTA
chr16 85665148 85681115 enh16875 85723679 42564
Prostate (PC-3) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Stomach Muscle (A673) Placenta Lung (PC-9) Pancreas Epithelial (MCF-7)
chr16 85672210 85672324 vista23336 85723679 51355
VISTA
chr16 85678973 85679150 vista23337 85723679 44529
VISTA
chr16 85682025 85687750 enh44345 85723679 35929
Prostate (RWPE1) Ovary Stomach Muscle (A673) Colon (HCT116) Thyroid Muscle (Myotube) Uterus Heart
chr16 85710525 85714675 enh52384 85723679 9004
Large Intestine
chr16 85726494 85726553 vista23338 85723679 2815
VISTA
chr16 85728675 85735535 enh69206 85723679 4996
Bone Marrow (K562) Muscle (A673) Neural Stem Cells (H9) Prostate (RWPE1)
chr16 85733301 85733460 vista23339 85723679 9622
VISTA
chr16 85734545 85734806 vista23340 85723679 10866
VISTA
chr16 85746708 85760055 enh16876 85723679 23029
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Muscle (A673) Placenta Breast Lung (PC-9) Pancreas Spleen Muscle (Myotube) Epithelial (MCF-7)
chr16 85751381 85751721 vista23341 85723679 27702
VISTA
chr16 85758517 85758802 vista23342 85723679 34838
VISTA
chr16 85760625 85767035 enh52385 85723679 36946
Muscle (A673) Large Intestine
chr16 85763697 85763906 vista23343 85723679 40018
VISTA
chr16 85770565 85775155 enh16877 85723679 46886
Placenta
chr16 85777505 85783447 enh16878 85723679 53826
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Placenta Colon (HCT116) Epithelial (MCF-7)
chr16 85780154 85780247 vista23344 85723679 56475
VISTA
chr16 85783425 85783755 vista23345 85723679 59746
VISTA
chr16 85783855 85783992 vista23346 85723679 60176
VISTA
chr16 85785568 85785942 vista23347 85723679 61889
VISTA
chr16 85789975 85790405 vista23348 85723679 66296
VISTA
chr16 85790438 85804195 enh31985 85723679 66759
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Blood (OCI-LY7) Lung (A549) Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Stomach
Transcript facotrs that regulate GINS2[ENSG00000131153.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr16 85725739 85727249 TCF7L2 GTRD no Colon (HCT116) 85723679 2060 108216896
chr16 85725768 85727571 ZNF143 GTRD no Epithelial (MCF-7) 85723679 2089 108216897
chr16 85725770 85727562 ZNF143 GTRD no Epithelial (MCF-7) 85723679 2091 108216898
chr16 85725772 85726740 ZNF274 GTRD no Blood (GM12878) 85723679 2093 108216899
chr16 85726239 85726520 YY1 GTRD no Embryonic Stem Cell Line (H1-hESC) 85723679 2560 108216900
chr16 85726497 85726501 YY1 TRANSFAC yes 85723679 2818 49409942
chr16 85726500 85726521 IRF1 JASPAR yes 85723679 2821 49409943
chr16 85726506 85726521 MEF2C JASPAR yes 85723679 2827 49409944
chr16 85726507 85726519 POU2F1 JASPAR yes 85723679 2828 49409945
chr16 85726507 85726520 POU3F3 JASPAR yes 85723679 2828 49409946
chr16 85726508 85726520 POU3F1 JASPAR yes 85723679 2829 49409947
chr16 85726508 85726520 POU3F2 JASPAR yes 85723679 2829 49409948
chr16 85726509 85726513 YY1 TRANSFAC yes 85723679 2830 49409949
chr16 85726523 85726530 NKX3-1 JASPAR yes 85723679 2844 49409950
chr16 85726534 85726538 YY1 TRANSFAC yes 85723679 2855 49409951
SNPs associated with GINS2[ENSG00000131153.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr16 86027777 rs16940211 T G 304098 Esophagus 0.0081855 4631682
chr16 84856542 rs2326397 T C 853262 Heart 0.316745 4613157
chr16 85733922 rs8061069 A G 10243 Breast 0.289869 4627527
chr16 85665378 rs750461 G C 44426 Spleen 0.429681 4626637
chr16 85452940 rs146567087 C T 256864 Ovary 0.085757 4622636
chr16 85673099 rs56915072 GGGCGCCA G 36705 Uterus 0.120691 4626869
chr16 85298796 rs142536827 G A 411008 Liver 0.464426 4619612
chr16 85185056 rs74459494 A G 524748 Lung 0.223693 4617417
chr16 84963885 rs9888779 C A 745919 Stomach 0.0604601 4614455
chr16 85479811 rs75704134 C G 229993 Adrenal 0.174982 4623220
Details of GINS2[ENSG00000131153.4]
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Genomic Location chr16:85709804-85723679[-]
TSS 85723679
Gene Name GINS2
Ensembl ID ENSG00000131153.4
ENTREZID 51659
Uniprot
Q9Y248
Protein Name
DNA replication complex GINS protein PSF2
Expression levels of GINS2[ENSG00000131153.4]
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