EnhancerDB
  1. Home
  2. Gene
  3. HMCN1[ENSG00000143341.7]
Enhancers that regulate HMCN1[ENSG00000143341.7]
Back to top
Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 185599925 185608348 enh12479 185703683 95335
Skin (Keratinocyte) Placenta
chr1 185611645 185629075 enh12480 185703683 74608
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Ovary Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr1 185615541 185615870 vista4275 185703683 87813
VISTA
chr1 185629905 185636195 enh12481 185703683 67488
Muscle (A673) Placenta Brain (SK-N-MC)
chr1 185637545 185645955 enh64147 185703683 57728
Liver (HepG2) Brain (SK-N-MC) Muscle (A673) Heart Blood (T-cell) Stomach
chr1 185646425 185652435 enh74431 185703683 51248
Brain (SK-N-MC) Muscle (A673) Spleen Uterus Stomach
chr1 185652745 185660655 enh74432 185703683 43028
Muscle (A673) Brain (SK-N-MC)
chr1 185660885 185668155 enh819 185703683 35528
Prostate (PC-3) Blood (T-cell) Muscle (A673) Blood (Karpas-422) Thymus Epithelial (MCF-7)
chr1 185668925 185673075 enh74433 185703683 30608
Muscle (A673)
chr1 185682145 185692315 enh27322 185703683 11368
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Muscle (A673)
chr1 185704575 185705000 vista4276 185703683 892
VISTA
chr1 185709176 185709383 vista4277 185703683 5493
VISTA
chr1 185716785 185720935 enh67187 185703683 13102
Neural Stem Cells (H9)
chr1 185734805 185738955 enh111544 185703683 31122
Brain (SK-N-MC)
chr1 185741625 185746835 enh74434 185703683 37942
Muscle (A673) Brain (SK-N-MC)
chr1 185755059 185766510 enh50104 185703683 51376
Brain (SK-N-MC) Large Intestine Bone (Osteoblast) Muscle (A673) Spleen Neural Stem Cells (H9) Heart
chr1 185770925 185784775 enh67188 185703683 67242
Prostate (PC-3) Brain (SK-N-MC) Muscle (A673) Lung (PC-9) Neural Stem Cells (H9) Epithelial (MCF-7)
chr1 185771429 185771809 vista4278 185703683 67746
VISTA
chr1 185791345 185795495 enh95925 185703683 87662
Epithelial (MCF-7)
chr1 185796352 185796554 vista4279 185703683 92669
VISTA
chr1 185801765 185809155 enh74435 185703683 98082
Muscle (A673) Brain (SK-N-MC)
Transcript facotrs that regulate HMCN1[ENSG00000143341.7]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 185704127 185704651 ZNF274 GTRD no Bone Marrow (K562) 185703683 444 107852581
chr1 185704594 185704597 MYB TRANSFAC yes 185703683 911 118417909
chr1 185704601 185704605 YY1 TRANSFAC yes 185703683 918 118417910
chr1 185704612 185704630 NR3C1 JASPAR yes 185703683 929 118417911
chr1 185704615 185704630 SCRT1 JASPAR yes 185703683 932 118417912
chr1 185704616 185704626 MSC JASPAR yes 185703683 933 118417913
chr1 185704616 185704628 GRHL1 JASPAR yes 185703683 933 118417914
chr1 185704617 185704630 SCRT2 JASPAR yes 185703683 934 118417915
chr1 185704619 185704625 PTF TRANSFAC yes 185703683 936 118417916
chr1 185704624 185704637 SMAD2 JASPAR yes 185703683 941 118417917
chr1 185704637 185704642 ETS2 TRANSFAC yes 185703683 954 118417918
chr1 185704655 185704658 MYB TRANSFAC yes 185703683 972 118417919
chr1 185704674 185704688 TCF7L2 JASPAR yes 185703683 991 118417920
chr1 185704674 185704689 LEF1 JASPAR yes 185703683 991 118417921
chr1 185704675 185704690 FOXP1 JASPAR yes 185703683 992 118417922
chr1 185704675 185704696 IRF1 JASPAR yes 185703683 992 118417923
chr1 185704680 185704695 FOXP1 JASPAR yes 185703683 997 118417924
chr1 185704683 185704704 IRF1 JASPAR yes 185703683 1000 118417925
chr1 185704691 185704706 NFYB JASPAR yes 185703683 1008 118417926
chr1 185704694 185704705 DUX4 JASPAR yes 185703683 1011 118417927
chr1 185704695 185704707 PBX1 JASPAR yes 185703683 1012 118417928
chr1 185704698 185704702 H1TF2 TRANSFAC yes 185703683 1015 118417929
chr1 185704698 185704702 NFE TRANSFAC yes 185703683 1015 118417930
chr1 185704698 185704702 SRF TRANSFAC yes 185703683 1015 118417931
chr1 185704703 185704707 YY1 TRANSFAC yes 185703683 1020 118417932
chr1 185704709 185704722 DUXA JASPAR yes 185703683 1026 118417933
chr1 185704710 185704713 MYB TRANSFAC yes 185703683 1027 118417934
chr1 185704710 185704721 DUX4 JASPAR yes 185703683 1027 118417935
chr1 185704737 185704741 LFA1 TRANSFAC yes 185703683 1054 118417936
chr1 185704743 185704747 YY1 TRANSFAC yes 185703683 1060 118417937
chr1 185704747 185704753 GATA3 JASPAR yes 185703683 1064 118417938
chr1 185704766 185704770 TEAD2 TRANSFAC yes 185703683 1083 118417939
chr1 185704766 185704771 TBP TRANSFAC yes 185703683 1083 118417940
chr1 185704767 185704775 FOXG1 JASPAR yes 185703683 1084 118417941
chr1 185704772 185704776 YY1 TRANSFAC yes 185703683 1089 118417942
chr1 185704812 185704820 TEAD3 JASPAR yes 185703683 1129 118417943
chr1 185704850 185704853 MYB TRANSFAC yes 185703683 1167 118417944
chr1 185704856 185704860 YY1 TRANSFAC yes 185703683 1173 118417945
chr1 185704862 185704877 TFAP2A JASPAR yes 185703683 1179 118417946
chr1 185704862 185704877 TFAP2C JASPAR yes 185703683 1179 118417947
chr1 185704903 185704918 FOXA1 JASPAR yes 185703683 1220 118417948
chr1 185704904 185704919 FOXP1 JASPAR yes 185703683 1221 118417949
chr1 185704906 185704917 FOXB1 JASPAR yes 185703683 1223 118417950
chr1 185704906 185704917 FOXC1 JASPAR yes 185703683 1223 118417951
chr1 185704907 185704911 YY1 TRANSFAC yes 185703683 1224 118417952
chr1 185704907 185704918 FOXA1 JASPAR yes 185703683 1224 118417953
chr1 185704911 185704932 IRF1 JASPAR yes 185703683 1228 118417954
chr1 185704914 185704928 STAT1 JASPAR yes 185703683 1231 118417955
chr1 185704915 185704927 IRF1 JASPAR yes 185703683 1232 118417956
chr1 185704915 185704929 IRF7 JASPAR yes 185703683 1232 118417957
chr1 185704915 185704929 IRF8 JASPAR yes 185703683 1232 118417958
chr1 185704915 185704930 IRF9 JASPAR yes 185703683 1232 118417959
chr1 185704917 185704938 IRF1 JASPAR yes 185703683 1234 118417960
chr1 185704919 185704934 PRDM1 JASPAR yes 185703683 1236 118417961
chr1 185704919 185704934 STAT2 JASPAR yes 185703683 1236 118417962
chr1 185704921 185704935 IRF8 JASPAR yes 185703683 1238 118417963
chr1 185704921 185704936 IRF9 JASPAR yes 185703683 1238 118417964
chr1 185704934 185704954 TBX19 JASPAR yes 185703683 1251 118417965
chr1 185704936 185704952 T JASPAR yes 185703683 1253 118417966
SNPs associated with HMCN1[ENSG00000143341.7], confirmed by eQTL
Back to top
Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 185011526 rs12024723 A G 692157 Esophagus 0.373952 790898
chr1 185619568 rs74455225 C T 84115 Esophagus 0.0103667 795027
chr1 185876898 rs77924866 G A,C 0 Pancreas 0.0820319 796836
chr1 186206695 rs1293986 T C 46610 Breast 0.2376 797994
chr1 186583895 rs112682184 G C 423810 Thyroid 0.0557937 799593
chr1 185616935 rs72727750 T C 86748 Lung 0.198819 794965
chr1 185580260 rs10911761 T C 123423 Stomach 0.150377 794554
Details of HMCN1[ENSG00000143341.7]
Back to top
Genomic Location chr1:185703683-186160085[+]
TSS 185703683
Gene Name HMCN1
Ensembl ID ENSG00000143341.7
ENTREZID 83872
Uniprot
Q96RW7
Protein Name
Hemicentin-1
Expression levels of HMCN1[ENSG00000143341.7]
Back to top