EnhancerDB
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Enhancers that regulate SYCE2[ENSG00000161860.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 12947043 12947383 vista28661 13030090 82707
VISTA
chr19 12957682 12957886 vista28662 13030090 72204
VISTA
chr19 12994554 12994766 vista28663 13030090 35324
VISTA
chr19 13006078 13006409 vista28664 13030090 23681
VISTA
chr19 13017585 13022255 enh104516 13030090 7835
Peripheral Blood (MM.1S) Stomach
chr19 13023589 13024232 vista28665 13030090 5858
VISTA
chr19 13024998 13025376 vista28666 13030090 4714
VISTA
chr19 13048278 13048689 vista28667 13030090 18188
VISTA
chr19 13058519 13066495 enh5014 13030090 28429
Muscle (Myoblast) Blood (Karpas-422)
chr19 13086745 13090915 enh88370 13030090 56655
Pancreas Pancreas (Panc1) Ovary
chr19 13092201 13100895 enh32889 13030090 62111
Bone Marrow (K562) Prostate (RWPE1) Astrocyte Stomach Peripheral Blood (MM.1S) Pancreas Heart
chr19 13094405 13094796 vista28668 13030090 64315
VISTA
chr19 13095998 13096573 vista28669 13030090 65908
VISTA
chr19 13107426 13115175 enh32890 13030090 77336
Astrocyte Bone (Osteoblast) Lung Pancreas Stomach
chr19 13113447 13113871 vista28670 13030090 83357
VISTA
chr19 13115737 13122542 enh88371 13030090 85647
Pancreas Thyroid Prostate (RWPE1)
chr19 13123441 13132975 enh17928 13030090 93351
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Esophagus Bone (Osteoblast) Placenta Muscle (Myoblast) Heart
chr19 13123653 13124120 vista28671 13030090 93563
VISTA
chr19 13125867 13126278 vista28672 13030090 95777
VISTA
chr19 13129050 13129163 vista28673 13030090 98960
VISTA
Transcript facotrs that regulate SYCE2[ENSG00000161860.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 13024356 13025573 TCF7L2 GTRD no Colon (HCT116) 13030090 4517 108387033
chr19 13024393 13025454 TCF7L2 GTRD no Colon (HCT116) 13030090 4636 108387034
chr19 13024432 13025362 TCF7L2 GTRD no Colon (HCT116) 13030090 4728 108387035
chr19 13024705 13025105 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 13030090 4985 108387037
chr19 13024831 13025111 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 13030090 4979 108387038
chr19 13024857 13025227 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 13030090 4863 108387039
chr19 13024889 13025553 ZNF143 GTRD no Epithelial (MCF-7) 13030090 4537 108387040
chr19 13024961 13025286 ZNF274 GTRD no Bone Marrow (K562) 13030090 4804 108387041
chr19 13025042 13025378 ZNF274 GTRD no Bone Marrow (K562) 13030090 4712 108387042
chr19 13025048 13025506 SOX2 GTRD no Neural Stem Cells (H9) 13030090 4584 108387043
chr19 13025050 13025589 ZNF143 GTRD no Epithelial (MCF-7) 13030090 4501 108387044
chr19 13025071 13025091 RREB1 JASPAR yes 13030090 4999 70807077
chr19 13025083 13025093 ZNF740 JASPAR yes 13030090 4997 70807078
chr19 13025083 13025095 E2F8 JASPAR yes 13030090 4995 70807079
chr19 13025087 13025100 NFKB2 JASPAR yes 13030090 4990 70807080
chr19 13025088 13025099 NFKB1 JASPAR yes 13030090 4991 70807081
chr19 13025089 13025094 ETS2 TRANSFAC yes 13030090 4996 70807082
chr19 13025110 13025120 NFIA JASPAR yes 13030090 4970 70807083
chr19 13025112 13025118 NFIC JASPAR yes 13030090 4972 70807084
chr19 13025113 13025134 REST JASPAR yes 13030090 4956 70807085
chr19 13025114 13025118 H1TF2 TRANSFAC yes 13030090 4972 70807086
chr19 13025114 13025118 NFE TRANSFAC yes 13030090 4972 70807087
chr19 13025114 13025118 SRF TRANSFAC yes 13030090 4972 70807088
chr19 13025118 13025124 ETS1 JASPAR yes 13030090 4966 70807089
chr19 13025121 13025414 ZNF274 GTRD no Blood (GM12878) 13030090 4676 108387045
chr19 13025142 13025146 YY1 TRANSFAC yes 13030090 4944 70807090
chr19 13025148 13025152 H1TF2 TRANSFAC yes 13030090 4938 70807091
chr19 13025148 13025152 NFE TRANSFAC yes 13030090 4938 70807092
chr19 13025148 13025152 SRF TRANSFAC yes 13030090 4938 70807093
chr19 13025179 13025189 NFIA JASPAR yes 13030090 4901 70807094
chr19 13025181 13025187 NFIC JASPAR yes 13030090 4903 70807095
chr19 13025190 13025195 ETS2 TRANSFAC yes 13030090 4895 70807096
chr19 13025219 13025239 TP63 JASPAR yes 13030090 4851 70807097
chr19 13025228 13025249 REST JASPAR yes 13030090 4841 70807098
chr19 13025262 13025283 ZNF263 JASPAR yes 13030090 4807 70807099
chr19 13025262 13025506 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 13030090 4584 108387046
chr19 13025273 13025284 FLI1 JASPAR yes 13030090 4806 70807100
chr19 13025274 13025284 GABPA JASPAR yes 13030090 4806 70807101
chr19 13025274 13025287 ELF1 JASPAR yes 13030090 4803 70807102
chr19 13025275 13025283 EHF JASPAR yes 13030090 4807 70807103
chr19 13025299 13025310 ELK4 JASPAR yes 13030090 4780 70807104
chr19 13025299 13025310 FLI1 JASPAR yes 13030090 4780 70807105
chr19 13025300 13025310 ETV6 JASPAR yes 13030090 4780 70807106
chr19 13025300 13025313 ELF1 JASPAR yes 13030090 4777 70807107
chr19 13025300 13025314 SPI1 JASPAR yes 13030090 4776 70807108
chr19 13025301 13025308 SPI1 JASPAR yes 13030090 4782 70807109
chr19 13025301 13025309 EHF JASPAR yes 13030090 4781 70807110
chr19 13025327 13025337 ZNF740 JASPAR yes 13030090 4753 70807111
chr19 13025327 13025347 RREB1 JASPAR yes 13030090 4743 70807112
chr19 13025328 13025338 ZNF740 JASPAR yes 13030090 4752 70807113
chr19 13025328 13025348 RREB1 JASPAR yes 13030090 4742 70807114
chr19 13025329 13025339 SP1 JASPAR yes 13030090 4751 70807115
chr19 13025329 13025339 ZNF740 JASPAR yes 13030090 4751 70807116
chr19 13025329 13025349 RREB1 JASPAR yes 13030090 4741 70807117
chr19 13025329 13026198 ZNF274 GTRD no Bone Marrow (K562) 13030090 3892 108387047
chr19 13025330 13025340 SP1 JASPAR yes 13030090 4750 70807118
chr19 13025330 13025340 ZNF740 JASPAR yes 13030090 4750 70807119
chr19 13025331 13025351 RREB1 JASPAR yes 13030090 4739 70807120
chr19 13025332 13025342 ZNF740 JASPAR yes 13030090 4748 70807121
chr19 13025332 13025346 PLAG1 JASPAR yes 13030090 4744 70807122
chr19 13025333 13025353 RREB1 JASPAR yes 13030090 4737 70807123
chr19 13025334 13025354 RREB1 JASPAR yes 13030090 4736 70807124
chr19 13025339 13025349 ZNF740 JASPAR yes 13030090 4741 70807125
chr19 13025339 13025356 ZNF410 JASPAR yes 13030090 4734 70807126
chr19 13025340 13025360 RREB1 JASPAR yes 13030090 4730 70807127
chr19 13025344 13025353 CDX1 JASPAR yes 13030090 4737 70807128
chr19 13025344 13025354 HOXA13 JASPAR yes 13030090 4736 70807129
chr19 13025344 13025354 HOXB13 JASPAR yes 13030090 4736 70807130
chr19 13025344 13025354 HOXD13 JASPAR yes 13030090 4736 70807131
SNPs associated with SYCE2[ENSG00000161860.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr19 13284603 rs10854122 T C 254513 Esophagus 0.216642 5449279
chr19 13268712 rs398033979 A AT 238622 Heart 0.302141 5449082
chr19 13006685 rs2238641 T C 2915 Liver 0.00205654 5447238
Details of SYCE2[ENSG00000161860.7]
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Genomic Location chr19:13009600-13030090[-]
TSS 13030090
Gene Name SYCE2
Ensembl ID ENSG00000161860.7
ENTREZID 256126
Uniprot
Q6PIF2
Protein Name
Synaptonemal complex central element protein 2
Expression levels of SYCE2[ENSG00000161860.7]
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