EnhancerDB
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Enhancers that regulate TSR1[ENSG00000167721.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 2131925 2147395 enh62579 2240801 93406
Brain (SK-N-SH) Prostate (RWPE1) Esophagus Bone (Osteoblast) Stomach Muscle (A673) Muscle (Myoblast) Pancreas Uterus Heart
chr17 2143435 2143643 vista23703 2240801 97158
VISTA
chr17 2144119 2144251 vista23704 2240801 96550
VISTA
chr17 2151386 2159691 enh32050 2240801 81110
Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (GM12878) Thymus
chr17 2160245 2169115 enh32051 2240801 71686
Skin (Keratinocyte) Prostate (PC-3) Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Peripheral Blood (MM.1S) Muscle (Myoblast) Muscle (Myotube) Uterus Thymus
chr17 2162010 2162402 vista23705 2240801 78399
VISTA
chr17 2163031 2163247 vista23706 2240801 77554
VISTA
chr17 2166387 2166805 vista23707 2240801 73996
VISTA
chr17 2167377 2167408 vista23708 2240801 73393
VISTA
chr17 2172005 2177535 enh107690 2240801 63266
Blood (T-cell) Lung (PC-9)
chr17 2179145 2184675 enh101494 2240801 56126
Thyroid
chr17 2191505 2195675 enh4209 2240801 45126
Peripheral Blood (MM.1S) Blood (Karpas-422)
chr17 2198811 2198924 vista23709 2240801 41877
VISTA
chr17 2241529 2241816 vista23710 2240801 728
VISTA
chr17 2244803 2253610 enh16932 2240801 4002
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Stomach Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Muscle (Myotube) Epithelial (MCF-7)
chr17 2253665 2259250 enh47991 2240801 12864
Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Blood (OCI-LY7) Colon (HCT116) Peripheral Blood (MM.1S) Spleen Thymus Epithelial (MCF-7)
chr17 2260605 2264770 enh32052 2240801 19804
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Astrocyte Muscle (A673) Lung (PC-9) Pancreas
chr17 2268505 2272655 enh109742 2240801 27704
Stomach
chr17 2290037 2302995 enh4210 2240801 49236
Colon (HCT116) Bone (Osteoblast) Blood (Karpas-422)
chr17 2291927 2292298 vista23711 2240801 51126
VISTA
chr17 2299235 2299531 vista23712 2240801 58434
VISTA
chr17 2300026 2300553 vista23713 2240801 59225
VISTA
chr17 2302108 2302510 vista23714 2240801 61307
VISTA
chr17 2302778 2303366 vista23715 2240801 61977
VISTA
chr17 2305266 2305571 vista23716 2240801 64465
VISTA
chr17 2307434 2307709 vista23717 2240801 66633
VISTA
chr17 2307798 2307958 vista23718 2240801 66997
VISTA
chr17 2324290 2329106 enh62580 2240801 83489
Esophagus Prostate (RWPE1)
chr17 2335105 2339255 enh32053 2240801 94304
Astrocyte
Transcript facotrs that regulate TSR1[ENSG00000167721.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 2237273 2242233 ZNF274 GTRD no Blood (GM12878) 2240801 1432 108230344
chr17 2239416 2241643 POLR2A UCSC Txn Factor no Conserved 2240801 842 108230345
chr17 2240909 2241579 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 2240801 108 108230346
chr17 2241091 2241747 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 2240801 290 108230347
chr17 2241145 2241665 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 2240801 344 108230348
chr17 2241217 2241637 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 2240801 416 108230349
chr17 2241240 2241550 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 2240801 439 108230350
chr17 2241280 2241590 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 2240801 479 108230351
chr17 2241318 2241562 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2240801 517 108230352
chr17 2241403 2241593 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 2240801 602 108230353
chr17 2241455 2241551 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 2240801 654 108230354
chr17 2241523 2242372 TEF1 GTRD no Bone (Osteoblast) 2240801 722 108230355
chr17 2241529 2241540 TFAP2A JASPAR yes 2240801 728 21184180
chr17 2241529 2241540 TFAP2B JASPAR yes 2240801 728 21184181
chr17 2241529 2241541 TFAP2A JASPAR yes 2240801 728 21184182
chr17 2241558 2241569 E2F6 JASPAR yes 2240801 757 21184183
chr17 2241559 2241580 ZNF263 JASPAR yes 2240801 758 21184184
chr17 2241562 2241583 ZNF263 JASPAR yes 2240801 761 21184185
chr17 2241567 2241579 ZBTB7A JASPAR yes 2240801 766 21184186
chr17 2241568 2241573 SP1 TRANSFAC yes 2240801 767 21184187
chr17 2241582 2241902 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 2240801 781 108230356
chr17 2241610 2241870 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 2240801 809 108230357
chr17 2241616 2241619 MYB TRANSFAC yes 2240801 815 21184188
chr17 2241617 2241633 SOX8 JASPAR yes 2240801 816 21184189
chr17 2241619 2241631 EHF JASPAR yes 2240801 818 21184190
chr17 2241623 2241629 ETS1 JASPAR yes 2240801 822 21184191
chr17 2241623 2241629 SPI1 JASPAR yes 2240801 822 21184192
chr17 2241625 2241905 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2240801 824 108230358
chr17 2241641 2241654 NFKB2 JASPAR yes 2240801 840 21184193
chr17 2241642 2241653 NFKB1 JASPAR yes 2240801 841 21184194
chr17 2241642 2241655 NFKB1 JASPAR yes 2240801 841 21184195
chr17 2241642 2241655 NFKB2 JASPAR yes 2240801 841 21184196
chr17 2241643 2241648 ETS2 TRANSFAC yes 2240801 842 21184197
chr17 2241643 2241653 NFKB1 JASPAR yes 2240801 842 21184198
chr17 2241643 2241653 RELA JASPAR yes 2240801 842 21184199
chr17 2241643 2241654 NFKB1 JASPAR yes 2240801 842 21184200
chr17 2241644 2241655 NFKB1 JASPAR yes 2240801 843 21184201
chr17 2241648 2241658 ZNF740 JASPAR yes 2240801 847 21184202
chr17 2241667 2241897 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2240801 866 108230359
chr17 2241676 2241687 E2F6 JASPAR yes 2240801 875 21184203
chr17 2241679 2242179 ZNF274 GTRD no Liver (HepG2) 2240801 878 108230360
chr17 2241688 2241691 MYB TRANSFAC yes 2240801 887 21184204
chr17 2241693 2242226 ZNF274 GTRD no Liver (HepG2) 2240801 892 108230361
chr17 2241695 2241706 ESRRB JASPAR yes 2240801 894 21184205
chr17 2241705 2241715 SP1 JASPAR yes 2240801 904 21184206
chr17 2241705 2242242 ZBTB33 GTRD no Brain (SK-N-SH) 2240801 904 108230362
chr17 2241720 2242263 ZNF274 GTRD no Bone Marrow (K562) 2240801 919 108230363
chr17 2241721 2241725 YY1 TRANSFAC yes 2240801 920 21184207
chr17 2241727 2241731 YY1 TRANSFAC yes 2240801 926 21184208
chr17 2241733 2242174 ZBTB33 GTRD no Brain (SK-N-SH) 2240801 932 108230364
chr17 2241734 2241739 SP1 TRANSFAC yes 2240801 933 21184209
chr17 2241740 2241744 LFA1 TRANSFAC yes 2240801 939 21184210
chr17 2241749 2241759 MAX JASPAR yes 2240801 948 21184211
chr17 2241752 2241766 JUN JASPAR yes 2240801 951 21184212
chr17 2241754 2241765 BATF JASPAR yes 2240801 953 21184213
chr17 2241755 2241766 FOSL2 JASPAR yes 2240801 954 21184214
chr17 2241755 2241766 JUNB JASPAR yes 2240801 954 21184215
chr17 2241756 2241767 FOS JASPAR yes 2240801 955 21184216
chr17 2241756 2241767 FOSL1 JASPAR yes 2240801 955 21184217
chr17 2241756 2241767 JUND JASPAR yes 2240801 955 21184218
chr17 2241756 2241767 NFE2 JASPAR yes 2240801 955 21184219
chr17 2241757 2241766 JDP2 JASPAR yes 2240801 956 21184220
chr17 2241757 2241768 FOSL2 JASPAR yes 2240801 956 21184221
chr17 2241757 2241768 JUNB JASPAR yes 2240801 956 21184222
chr17 2241757 2241771 JUN JASPAR yes 2240801 956 21184223
chr17 2241769 2242171 ZBTB33 GTRD no Brain (SK-N-SH) 2240801 968 108230365
chr17 2241780 2242144 ZBTB33 GTRD no Brain (SK-N-SH) 2240801 979 108230366
chr17 2241789 2242328 ZBTB33 GTRD no Brain (SK-N-SH) 2240801 988 108230367
chr17 2241790 2241805 RUNX2 JASPAR yes 2240801 989 21184224
chr17 2241799 2241811 NHLH1 JASPAR yes 2240801 998 21184225
chr17 2241800 2242235 ZNF274 GTRD no Liver (HepG2) 2240801 999 108230368
SNPs associated with TSR1[ENSG00000167721.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 2503544 rs114132417 C A 262743 Esophagus 0.237318 4702814
chr17 2908162 rs117464358 G A 667361 Esophagus 0.337575 4706476
chr17 2470363 rs117243257 G A 229562 Pancreas 0.3591 4702658
chr17 1521892 rs57760491 G A,C 703905 Spleen 0.165765 4695436
chr17 1391444 rs201698493 G GTCCGC 834353 Ovary 0.360308 4694168
chr17 2387947 rs113698134 C A,T 147146 Thyroid 0.241101 4701951
chr17 1475062 rs76551266 G C 750735 Lung 0.143941 4694697
chr17 1459155 rs4300718 A C 766642 Stomach 0.44144 4694515
Details of TSR1[ENSG00000167721.6]
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Genomic Location chr17:2225797-2240801[-]
TSS 2240801
Gene Name TSR1
Ensembl ID ENSG00000167721.6
ENTREZID 55720
Uniprot
Q2NL82
Protein Name
Alternative protein TSR1
Pre-rRNA-processing protein TSR1 homolog
Expression levels of TSR1[ENSG00000167721.6]
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