EnhancerDB
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Enhancers that regulate SMG6[ENSG00000070366.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 2090104 2130255 enh4208 2207065 76810
Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr17 2126107 2126815 vista23702 2207065 80250
VISTA
chr17 2131925 2147395 enh62579 2207065 59670
Brain (SK-N-SH) Prostate (RWPE1) Esophagus Bone (Osteoblast) Stomach Muscle (A673) Muscle (Myoblast) Pancreas Uterus Heart
chr17 2143435 2143643 vista23703 2207065 63422
VISTA
chr17 2144119 2144251 vista23704 2207065 62814
VISTA
chr17 2151386 2159691 enh32050 2207065 47374
Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (GM12878) Thymus
chr17 2160245 2169115 enh32051 2207065 37950
Skin (Keratinocyte) Prostate (PC-3) Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Peripheral Blood (MM.1S) Muscle (Myoblast) Muscle (Myotube) Uterus Thymus
chr17 2162010 2162402 vista23705 2207065 44663
VISTA
chr17 2163031 2163247 vista23706 2207065 43818
VISTA
chr17 2166387 2166805 vista23707 2207065 40260
VISTA
chr17 2167377 2167408 vista23708 2207065 39657
VISTA
chr17 2172005 2177535 enh107690 2207065 29530
Blood (T-cell) Lung (PC-9)
chr17 2179145 2184675 enh101494 2207065 22390
Thyroid
chr17 2191505 2195675 enh4209 2207065 11390
Peripheral Blood (MM.1S) Blood (Karpas-422)
chr17 2198811 2198924 vista23709 2207065 8141
VISTA
chr17 2241529 2241816 vista23710 2207065 34464
VISTA
chr17 2244803 2253610 enh16932 2207065 37738
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Stomach Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Muscle (Myotube) Epithelial (MCF-7)
chr17 2253665 2259250 enh47991 2207065 46600
Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Blood (OCI-LY7) Colon (HCT116) Peripheral Blood (MM.1S) Spleen Thymus Epithelial (MCF-7)
chr17 2260605 2264770 enh32052 2207065 53540
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Astrocyte Muscle (A673) Lung (PC-9) Pancreas
chr17 2268505 2272655 enh109742 2207065 61440
Stomach
chr17 2290037 2302995 enh4210 2207065 82972
Colon (HCT116) Bone (Osteoblast) Blood (Karpas-422)
chr17 2291927 2292298 vista23711 2207065 84862
VISTA
chr17 2299235 2299531 vista23712 2207065 92170
VISTA
chr17 2300026 2300553 vista23713 2207065 92961
VISTA
chr17 2302108 2302510 vista23714 2207065 95043
VISTA
chr17 2302778 2303366 vista23715 2207065 95713
VISTA
chr17 2305266 2305571 vista23716 2207065 98201
VISTA
Transcript facotrs that regulate SMG6[ENSG00000070366.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with SMG6[ENSG00000070366.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 1487433 rs60664535 C T 475700 Esophagus 0.195475 4694907
chr17 1965085 rs7214308 C T 0 Esophagus 0.00176576 4698823
chr17 2768225 rs9908991 C A 561160 Breast 0.134708 4704823
chr17 1863296 rs201643516 C CCTAA 99837 Spleen 0.445231 4697576
chr17 1519662 rs8065481 G A,C 443471 Ovary 0.200275 4695404
chr17 1387198 rs45570939 T C 575935 Uterus 0.470765 4694098
chr17 1275212 rs72818258 A G 687921 Liver 0.351378 4693129
chr17 1516314 rs149268142 G A 446819 Adrenal 0.311303 4695333
Details of SMG6[ENSG00000070366.9]
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Genomic Location chr17:1963133-2207065[-]
TSS 2207065
Gene Name SMG6
Ensembl ID ENSG00000070366.9
ENTREZID 23293
Uniprot
Q86US8
Protein Name
Telomerase-binding protein EST1A
Expression levels of SMG6[ENSG00000070366.9]
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