EnhancerDB
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Enhancers that regulate PIGC[ENSG00000135845.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 172309865 172315243 enh27239 172413230 97987
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Esophagus Astrocyte Bone (Osteoblast) Muscle (A673) Thyroid Muscle (Myoblast) Uterus Blood (T-cell) Stomach
chr1 172318125 172332422 enh12370 172413230 80808
Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Spleen Prostate (RWPE1) Muscle (A673) Heart
chr1 172324588 172324814 vista3883 172413230 88416
VISTA
chr1 172327070 172327187 vista3884 172413230 86043
VISTA
chr1 172327558 172328156 vista3885 172413230 85074
VISTA
chr1 172350165 172355002 enh12371 172413230 58228
Astrocyte Placenta Uterus Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9)
chr1 172352690 172352912 vista3886 172413230 60318
VISTA
chr1 172357645 172373295 enh27240 172413230 39935
Prostate (PC-3) Liver Astrocyte Stomach Muscle (Myotube) Uterus Blood (T-cell) Heart
chr1 172369341 172369683 vista3887 172413230 43547
VISTA
chr1 172418117 172418641 vista3888 172413230 4887
VISTA
chr1 172419705 172423855 enh90738 172413230 6475
Bone Marrow (K562)
chr1 172440585 172461255 enh12372 172413230 27355
Skin (Keratinocyte) Prostate (PC-3) Stomach Placenta Lung (PC-9) Epithelial (MCF-7)
chr1 172445364 172445579 vista3889 172413230 32134
VISTA
chr1 172464365 172471715 enh12373 172413230 51135
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Esophagus Muscle (A673) Placenta Lung (PC-9) Pancreas Neural Stem Cells (H9) Heart
chr1 172466564 172466703 vista3890 172413230 53334
VISTA
chr1 172468818 172469289 vista3891 172413230 55588
VISTA
chr1 172480641 172484933 enh58170 172413230 67411
Skin (Keratinocyte) Prostate (PC-3) Epithelial (MCF-7)
chr1 172499206 172499418 vista3892 172413230 85976
VISTA
chr1 172500351 172500710 vista3893 172413230 87121
VISTA
chr1 172503525 172518495 enh728 172413230 90295
Prostate (PC-3) Blood (OCI-LY7) Blood (GM12878) Muscle (A673) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Neural Stem Cells (H9) Stomach
chr1 172507125 172507604 vista3894 172413230 93895
VISTA
Transcript facotrs that regulate PIGC[ENSG00000135845.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 172417338 172418177 ZNF274 GTRD no Cervix (HeLa-S3) 172413230 4108 107845705
chr1 172417413 172418129 ZNF274 GTRD no Cervix (HeLa-S3) 172413230 4183 107845706
chr1 172417429 172418141 ZNF274 GTRD no Cervix (HeLa-S3) 172413230 4199 107845707
chr1 172418012 172418582 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 172413230 4782 107845708
chr1 172418017 172418547 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4787 107845709
chr1 172418023 172418343 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4793 107845710
chr1 172418051 172418555 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4821 107845711
chr1 172418063 172418639 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 172413230 4833 107845712
chr1 172418071 172418347 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 172413230 4841 107845713
chr1 172418076 172418546 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 172413230 4846 107845714
chr1 172418081 172418321 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 172413230 4851 107845715
chr1 172418084 172418404 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4854 107845716
chr1 172418103 172418367 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4873 107845717
chr1 172418105 172418365 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4875 107845718
chr1 172418118 172418668 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4888 107845719
chr1 172418124 172418664 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 172413230 4894 107845720
chr1 172418131 172418461 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4901 107845721
chr1 172418155 172418420 TFAP2C UCSC Txn Factor no Conserved 172413230 4925 107845722
chr1 172418155 172418420 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4925 107845723
chr1 172418157 172418497 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4927 107845724
chr1 172418165 172418186 ZNF263 JASPAR yes 172413230 4935 118398835
chr1 172418168 172418189 ZNF263 JASPAR yes 172413230 4938 118398836
chr1 172418175 172418190 PRDM1 JASPAR yes 172413230 4945 118398837
chr1 172418187 172418731 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 172413230 4957 107845725
chr1 172418189 172418204 JUND JASPAR yes 172413230 4959 118398838
chr1 172418190 172418646 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4960 107845726
chr1 172418194 172418208 GATA2 JASPAR yes 172413230 4964 118398839
chr1 172418196 172418204 GATA3 JASPAR yes 172413230 4966 118398840
chr1 172418208 172418588 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 172413230 4978 107845727
chr1 172418209 172418705 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 172413230 4979 107845728
chr1 172418212 172418217 USF2 TRANSFAC yes 172413230 4982 118398841
chr1 172418221 172418591 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 172413230 4991 107845729
chr1 172418226 172418236 TEAD1 JASPAR yes 172413230 4996 118398842
chr1 172418226 172418236 TEAD4 JASPAR yes 172413230 4996 118398843
chr1 172418226 172418238 TEAD1 JASPAR yes 172413230 4996 118398844
chr1 172418227 172418235 TEAD3 JASPAR yes 172413230 4997 118398845
SNPs associated with PIGC[ENSG00000135845.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 172367062 rs10489284 A G 0 Esophagus 0.103959 728503
chr1 172363526 rs1132148 A G 0 Esophagus 0.0886809 728463
chr1 172412845 rs60302909 C A,G 0 Esophagus 0.000553564 728588
chr1 172367097 rs10911681 A G 0 Heart 0.00352661 728505
chr1 172362949 rs3768445 G T 0 Heart 0.0105074 728452
chr1 172073288 rs7529234 G A 266041 Spleen 0.0570472 726865
chr1 172361179 rs2001128 G C 0 Uterus 0.368728 728433
chr1 172361566 rs61476903 GTATT G 0 Thyroid 0.00014079 728436
chr1 172928046 rs10798243 G C 514816 Lung 0.170873 732302
Details of PIGC[ENSG00000135845.5]
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Genomic Location chr1:172339329-172413230[-]
TSS 172413230
Gene Name PIGC
Ensembl ID ENSG00000135845.5
ENTREZID 5279
Uniprot
Q92535
Protein Name
class C
isoform CRA_a
Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
Phosphatidylinositol glycan
Expression levels of PIGC[ENSG00000135845.5]
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