EnhancerDB
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Enhancers that regulate MDC1[ENSG00000137337.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr6 30604064 30604457 vista51523 30685666 81209
VISTA
chr6 30644713 30652115 enh93488 30685666 33551
Liver (HepG2) Bone (Osteoblast)
chr6 30649746 30650798 vista51524 30685666 34868
VISTA
chr6 30651242 30651620 vista51525 30685666 34046
VISTA
chr6 30701442 30707520 enh49074 30685666 15776
Prostate (PC-3) Cervix (HeLa-S3) Blood (T-cell) Blood (OCI-LY7) Blood (GM12878) Stomach Peripheral Blood (MM.1S) Lung (PC-9) Uterus Thymus Heart
chr6 30703511 30703691 vista51526 30685666 17845
VISTA
chr6 30713465 30740215 enh23148 30685666 27799
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr6 30716024 30716359 vista51527 30685666 30358
VISTA
chr6 30716597 30717062 vista51528 30685666 30931
VISTA
chr6 30717441 30717627 vista51529 30685666 31775
VISTA
chr6 30719576 30719814 vista51530 30685666 33910
VISTA
chr6 30720004 30720713 vista51531 30685666 34338
VISTA
chr6 30722480 30722729 vista51532 30685666 36814
VISTA
chr6 30723847 30723920 vista51533 30685666 38181
VISTA
chr6 30726704 30727354 vista51534 30685666 41038
VISTA
chr6 30727821 30727972 vista51535 30685666 42155
VISTA
chr6 30731311 30731508 vista51536 30685666 45645
VISTA
chr6 30731781 30732171 vista51537 30685666 46115
VISTA
chr6 30735359 30735715 vista51538 30685666 49693
VISTA
chr6 30736850 30737361 vista51539 30685666 51184
VISTA
chr6 30737456 30737900 vista51540 30685666 51790
VISTA
chr6 30740965 30818275 enh23149 30685666 55299
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr6 30746716 30747579 vista51541 30685666 61050
VISTA
chr6 30748126 30748169 vista51542 30685666 62460
VISTA
chr6 30748515 30748873 vista51543 30685666 62849
VISTA
chr6 30754817 30754946 vista51544 30685666 69151
VISTA
chr6 30755729 30756010 vista51545 30685666 70063
VISTA
chr6 30761567 30761766 vista51546 30685666 75901
VISTA
chr6 30774085 30774428 vista51547 30685666 88419
VISTA
chr6 30785034 30785335 vista51548 30685666 99368
VISTA
Transcript facotrs that regulate MDC1[ENSG00000137337.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with MDC1[ENSG00000137337.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr6 30714667 rs150998114 C A 29001 Esophagus 0.000554967 8948364
chr6 30714667 rs150998114 C A 29001 Esophagus 0.00186876 8948364
chr6 29854399 rs9259194 A G 813185 Heart 0.262052 8942389
chr6 30313340 rs6986 G C 354244 Pancreas 0.0681251 8946706
chr6 30227206 rs17188303 G A 440378 Breast 0.224072 8946350
chr6 30615260 rs3132594 C T 52324 Spleen 0.000674157 8947880
chr6 31322911 rs1051488 C G,T 637245 Uterus 0.290164 8956235
chr6 30727785 rs3131035 A G 42119 Thyroid 0.0136165 8948551
chr6 30685066 rs3132587 A G 0 Stomach 0.100437 8948051
Details of MDC1[ENSG00000137337.10]
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Genomic Location chr6:30667584-30685666[-]
TSS 30685666
Gene Name MDC1
Ensembl ID ENSG00000137337.10
ENTREZID 9656
Uniprot
Q14676
A1Z5I9
Protein Name
Alternative protein MDC1
Mediator of DNA damage checkpoint 1 variant 1
Mediator of DNA damage checkpoint 1 variant 2
Mediator of DNA damage checkpoint 1 variant 3
Mediator of DNA damage checkpoint 1 variant 4
Mediator of DNA damage checkpoint protein 1
Expression levels of MDC1[ENSG00000137337.10]
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