EnhancerDB
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Enhancers that regulate VARS2[ENSG00000137411.12]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr6 30740965 30818275 enh23149 30876019 57744
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr6 30785034 30785335 vista51548 30876019 90684
VISTA
chr6 30785907 30786494 vista51549 30876019 89525
VISTA
chr6 30787859 30788252 vista51550 30876019 87767
VISTA
chr6 30789955 30790218 vista51551 30876019 85801
VISTA
chr6 30796195 30796565 vista51552 30876019 79454
VISTA
chr6 30804295 30804603 vista51553 30876019 71416
VISTA
chr6 30811913 30812084 vista51554 30876019 63935
VISTA
chr6 30820545 30831775 enh23150 30876019 44244
Thyroid Placenta Large Intestine
chr6 30834965 30839195 enh23151 30876019 36824
Placenta Brain (SK-N-MC)
chr6 30840574 30840974 vista51555 30876019 35045
VISTA
chr6 30841885 30846735 enh91685 30876019 29284
Bone Marrow (K562) Uterus Stomach
chr6 30845366 30845734 vista51556 30876019 30285
VISTA
chr6 30847125 30851955 enh100493 30876019 24064
Uterus
chr6 30897391 30897411 vista51557 30876019 21372
VISTA
chr6 30901201 30901293 vista51558 30876019 25182
VISTA
chr6 30910531 30910726 vista51559 30876019 34512
VISTA
chr6 30923441 30923743 vista51560 30876019 47422
VISTA
chr6 30926785 30933735 enh106192 30876019 50766
Peripheral Blood (MM.1S) Brain (SK-N-MC)
chr6 30926851 30926868 vista51561 30876019 50832
VISTA
chr6 30936805 30941130 enh77846 30876019 60786
Muscle (A673)
chr6 30964580 30972435 enh84145 30876019 88561
Prostate (PC-3) Lung (PC-9) Epithelial (MCF-7)
Transcript facotrs that regulate VARS2[ENSG00000137411.12]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with VARS2[ENSG00000137411.12], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr6 30837646 rs3130657 T C 38373 Heart 5.15729e-27 8950575
chr6 30919701 rs2517449 T C 25465 Pancreas 1.16525e-29 8950804
chr6 30810084 rs2535337 A G 65935 Breast 2.84539e-21 8950301
chr6 30825812 rs2844658 G A,C 50207 Uterus 0.000111278 8950471
Details of VARS2[ENSG00000137411.12]
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Genomic Location chr6:30876019-30894236[+]
TSS 30876019
Gene Name VARS2
Ensembl ID ENSG00000137411.12
ENTREZID 57176
Uniprot
B4DG77
Q5ST30
B4E0K6
Protein Name
mitochondrial
VARS2
VARS2 protein
Valine--tRNA ligase
Valine--tRNA ligase
Expression levels of VARS2[ENSG00000137411.12]
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