EnhancerDB
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Enhancers that regulate GALNS[ENSG00000141012.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr16 88819352 88850435 enh16903 88923378 72943
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr16 88826966 88827318 vista23511 88923378 96060
VISTA
chr16 88829964 88830251 vista23512 88923378 93127
VISTA
chr16 88831388 88831665 vista23513 88923378 91713
VISTA
chr16 88835950 88836275 vista23514 88923378 87103
VISTA
chr16 88836450 88836610 vista23515 88923378 86768
VISTA
chr16 88837093 88837695 vista23516 88923378 85683
VISTA
chr16 88839181 88839507 vista23517 88923378 83871
VISTA
chr16 88839973 88840262 vista23518 88923378 83116
VISTA
chr16 88847421 88847701 vista23519 88923378 75677
VISTA
chr16 88848168 88848452 vista23520 88923378 74926
VISTA
chr16 88848890 88849172 vista23521 88923378 74206
VISTA
chr16 88855160 88863461 enh47985 88923378 59917
Liver (HepG2) Blood (T-cell) Thymus Blood (OCI-LY7)
chr16 88857121 88857244 vista23522 88923378 66134
VISTA
chr16 88860126 88860280 vista23523 88923378 63098
VISTA
chr16 88865592 88865963 vista23524 88923378 57415
VISTA
chr16 88866491 88866710 vista23525 88923378 56668
VISTA
chr16 88866965 88874855 enh4186 88923378 48523
Blood (Karpas-422)
chr16 88919657 88920044 vista23526 88923378 3334
VISTA
chr16 88921143 88921285 vista23527 88923378 2093
VISTA
chr16 88946220 88957735 enh44357 88923378 22842
Muscle (A673) Muscle (Myotube) Stomach
chr16 88955496 88955935 vista23528 88923378 32118
VISTA
chr16 88968900 88968980 vista23529 88923378 45522
VISTA
chr16 88969235 88997095 enh16904 88923378 45857
Bone Marrow (K562) Epithelial (MCF-7) Prostate (RWPE1) Esophagus Astrocyte Stomach Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Heart
chr16 88969739 88970176 vista23530 88923378 46361
VISTA
chr16 88988977 88989104 vista23531 88923378 65599
VISTA
chr16 88991704 88992157 vista23532 88923378 68326
VISTA
Transcript facotrs that regulate GALNS[ENSG00000141012.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr16 88918355 88919692 AR GTRD no Prostate (PC-3) 88923378 3686 108224127
chr16 88918561 88919991 ZNF143 GTRD no Epithelial (MCF-7) 88923378 3387 108224128
chr16 88918660 88920156 ZNF143 GTRD no Epithelial (MCF-7) 88923378 3222 108224129
chr16 88919276 88919803 ZNF143 GTRD no Epithelial (MCF-7) 88923378 3575 108224130
chr16 88919394 88920454 ZNF274 GTRD no Cervix (HeLa-S3) 88923378 2924 108224131
chr16 88919397 88920437 TCF7L2 GTRD no Colon (HCT116) 88923378 2941 108224132
chr16 88919437 88920410 ZNF143 GTRD no Epithelial (MCF-7) 88923378 2968 108224133
chr16 88919498 88929400 TCF7L2 GTRD no Colon (HCT116) 88923378 3880 108224134
chr16 88919498 88929400 TCF7L2 GTRD no Colon (HCT116) 88923378 3880 108224135
chr16 88919596 88921917 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1461 108224136
chr16 88919596 88921917 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1461 108224137
chr16 88919657 88919672 FOXP1 JASPAR yes 88923378 3706 49419113
chr16 88919658 88919673 FOXP1 JASPAR yes 88923378 3705 49419114
chr16 88919658 88919679 IRF1 JASPAR yes 88923378 3699 49419115
chr16 88919659 88919674 FOXP1 JASPAR yes 88923378 3704 49419116
chr16 88919659 88919680 IRF1 JASPAR yes 88923378 3698 49419117
chr16 88919660 88919675 FOXP1 JASPAR yes 88923378 3703 49419118
chr16 88919660 88919681 IRF1 JASPAR yes 88923378 3697 49419119
chr16 88919661 88919676 FOXP1 JASPAR yes 88923378 3702 49419120
chr16 88919661 88919682 IRF1 JASPAR yes 88923378 3696 49419121
chr16 88919662 88919677 FOXP1 JASPAR yes 88923378 3701 49419122
chr16 88919662 88919683 IRF1 JASPAR yes 88923378 3695 49419123
chr16 88919663 88919678 FOXP1 JASPAR yes 88923378 3700 49419124
chr16 88919663 88919684 IRF1 JASPAR yes 88923378 3694 49419125
chr16 88919664 88919679 FOXP1 JASPAR yes 88923378 3699 49419126
chr16 88919664 88919685 IRF1 JASPAR yes 88923378 3693 49419127
chr16 88919665 88919680 FOXP1 JASPAR yes 88923378 3698 49419128
chr16 88919665 88919686 IRF1 JASPAR yes 88923378 3692 49419129
chr16 88919666 88919681 FOXP1 JASPAR yes 88923378 3697 49419130
chr16 88919666 88919687 IRF1 JASPAR yes 88923378 3691 49419131
chr16 88919667 88919682 FOXP1 JASPAR yes 88923378 3696 49419132
chr16 88919668 88919683 FOXP1 JASPAR yes 88923378 3695 49419133
chr16 88919668 88919689 IRF1 JASPAR yes 88923378 3689 49419134
chr16 88919669 88919684 FOXP1 JASPAR yes 88923378 3694 49419135
chr16 88919670 88919685 FOXP1 JASPAR yes 88923378 3693 49419136
chr16 88919721 88919733 NHLH1 JASPAR yes 88923378 3645 49419137
chr16 88919721 88919734 ZBTB18 JASPAR yes 88923378 3644 49419138
chr16 88919722 88919732 NHLH1 JASPAR yes 88923378 3646 49419139
chr16 88919722 88919732 TFAP4 JASPAR yes 88923378 3646 49419140
chr16 88919725 88919738 SMAD2 JASPAR yes 88923378 3640 49419141
chr16 88919745 88919750 GATA2 JASPAR yes 88923378 3628 49419142
chr16 88919752 88919767 SOX21 JASPAR yes 88923378 3611 49419143
chr16 88919776 88919791 STAT2 JASPAR yes 88923378 3587 49419144
chr16 88919777 88919791 STAT1 JASPAR yes 88923378 3587 49419145
chr16 88919778 88919788 NFATC3 JASPAR yes 88923378 3590 49419146
chr16 88919790 88919809 RFX2 JASPAR yes 88923378 3569 49419147
chr16 88919792 88919807 RFX5 JASPAR yes 88923378 3571 49419148
chr16 88919794 88919810 RFX3 JASPAR yes 88923378 3568 49419149
chr16 88919803 88919811 RHOXF1 JASPAR yes 88923378 3567 49419150
chr16 88919803 88919812 PITX3 JASPAR yes 88923378 3566 49419151
chr16 88919805 88919821 RFX2 JASPAR yes 88923378 3557 49419152
chr16 88919805 88919821 RFX3 JASPAR yes 88923378 3557 49419153
chr16 88919805 88919821 RFX4 JASPAR yes 88923378 3557 49419154
chr16 88919818 88919838 TP53 JASPAR yes 88923378 3540 49419155
chr16 88919820 88919840 TP63 JASPAR yes 88923378 3538 49419156
chr16 88919821 88919839 TP53 JASPAR yes 88923378 3539 49419157
chr16 88919821 88919839 TP73 JASPAR yes 88923378 3539 49419158
chr16 88919823 88919838 TP53 JASPAR yes 88923378 3540 49419159
chr16 88919852 88919856 LFA1 TRANSFAC yes 88923378 3522 49419160
chr16 88919859 88920063 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 88923378 3315 108224138
chr16 88919889 88919908 RFX2 JASPAR yes 88923378 3470 49419161
chr16 88919893 88919909 RFX2 JASPAR yes 88923378 3469 49419162
chr16 88919893 88919909 RFX3 JASPAR yes 88923378 3469 49419163
chr16 88919893 88919909 RFX4 JASPAR yes 88923378 3469 49419164
chr16 88919893 88919909 RFX5 JASPAR yes 88923378 3469 49419165
chr16 88919894 88919913 RFX2 JASPAR yes 88923378 3465 49419166
chr16 88919897 88920312 ZNF274 GTRD no Bone Marrow (K562) 88923378 3066 108224139
chr16 88919909 88919930 REST JASPAR yes 88923378 3448 49419167
chr16 88919915 88919935 ESR1 JASPAR yes 88923378 3443 49419168
chr16 88919928 88919935 JUN TRANSFAC yes 88923378 3443 49419169
chr16 88919936 88919947 ELK4 JASPAR yes 88923378 3431 49419170
chr16 88919936 88919947 FLI1 JASPAR yes 88923378 3431 49419171
chr16 88919937 88919947 ETV6 JASPAR yes 88923378 3431 49419172
chr16 88919937 88919947 GABPA JASPAR yes 88923378 3431 49419173
chr16 88919937 88919950 ELF1 JASPAR yes 88923378 3428 49419174
chr16 88919938 88919945 SPI1 JASPAR yes 88923378 3433 49419175
chr16 88919938 88919946 EHF JASPAR yes 88923378 3432 49419176
chr16 88919940 88919947 SPIB JASPAR yes 88923378 3431 49419177
chr16 88919940 88919955 RUNX2 JASPAR yes 88923378 3423 49419178
chr16 88919949 88919953 ESR1 TRANSFAC yes 88923378 3425 49419179
chr16 88919968 88919971 MYB TRANSFAC yes 88923378 3407 49419180
chr16 88919974 88919978 YY1 TRANSFAC yes 88923378 3400 49419181
chr16 88919975 88919985 NFATC3 JASPAR yes 88923378 3393 49419182
chr16 88919975 88919993 SRF JASPAR yes 88923378 3385 49419183
chr16 88919976 88919983 NFATC2 JASPAR yes 88923378 3395 49419184
chr16 88919977 88919993 SRF JASPAR yes 88923378 3385 49419185
chr16 88919977 88919995 SRF JASPAR yes 88923378 3383 49419186
chr16 88919978 88919990 SRF JASPAR yes 88923378 3388 49419187
chr16 88919980 88919992 SRF JASPAR yes 88923378 3386 49419188
chr16 88919988 88920337 ZNF274 GTRD no Bone Marrow (K562) 88923378 3041 108224140
chr16 88920012 88920026 GLIS3 JASPAR yes 88923378 3352 49419189
chr16 88920014 88920280 ZNF274 GTRD no Liver (HepG2) 88923378 3098 108224141
chr16 88920287 88923512 TCF7L2 GTRD no Colon (HCT116) 88923378 134 108224142
chr16 88920416 88921950 TCF7L2 GTRD no Colon (HCT116) 88923378 1428 108224143
chr16 88920427 88921179 ZNF143 GTRD no Epithelial (MCF-7) 88923378 2199 108224144
chr16 88920476 88930047 ZNF143 GTRD no Epithelial (MCF-7) 88923378 2902 108224145
chr16 88920484 88929535 TCF7L2 GTRD no Colon (HCT116) 88923378 2894 108224146
chr16 88920499 88921990 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1388 108224147
chr16 88920507 88924070 ZNF274 GTRD no Blood (GM12878) 88923378 692 108224148
chr16 88920511 88921606 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1772 108224149
chr16 88920512 88929907 ZNF143 GTRD no Epithelial (MCF-7) 88923378 2866 108224150
chr16 88920518 88921608 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1770 108224151
chr16 88920521 88927805 ZNF274 GTRD no Cervix (HeLa-S3) 88923378 2857 108224152
chr16 88920551 88921693 ZNF274 GTRD no Cervix (HeLa-S3) 88923378 1685 108224153
chr16 88920558 88930069 ZNF143 GTRD no Epithelial (MCF-7) 88923378 2820 108224154
chr16 88920565 88921169 ZNF143 GTRD no Epithelial (MCF-7) 88923378 2209 108224155
chr16 88920580 88921652 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1726 108224156
chr16 88920597 88923172 ZNF274 GTRD no Blood (GM12878) 88923378 206 108224157
chr16 88920653 88922477 ZNF274 GTRD no Blood (GM12878) 88923378 901 108224158
chr16 88920654 88923924 ZNF274 GTRD no Blood (GM12878) 88923378 546 108224159
chr16 88920672 88921610 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1768 108224160
chr16 88920682 88921729 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1649 108224161
chr16 88920693 88921664 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1714 108224162
chr16 88920705 88921297 ZNF274 GTRD no Blood (GM12878) 88923378 2081 108224163
chr16 88920710 88921659 ZBTB33 GTRD no Brain (SK-N-SH) 88923378 1719 108224164
chr16 88920724 88921646 ZNF274 GTRD no Blood (GM12878) 88923378 1732 108224165
chr16 88920730 88921867 ZNF274 GTRD no Blood (GM12878) 88923378 1511 108224166
chr16 88920763 88921602 ZNF274 GTRD no Blood (GM12878) 88923378 1776 108224167
chr16 88920764 88921580 ZBTB33 GTRD no Brain (SK-N-SH) 88923378 1798 108224168
chr16 88920768 88921513 ZNF274 GTRD no Blood (GM12878) 88923378 1865 108224169
chr16 88920771 88921568 ZNF274 GTRD no Blood (GM12878) 88923378 1810 108224170
chr16 88920787 88921165 ZNF274 GTRD no Blood (GM12878) 88923378 2213 108224171
chr16 88920789 88921796 ZNF274 GTRD no Blood (GM12878) 88923378 1582 108224172
chr16 88920799 88921330 ZNF274 GTRD no Blood (GM12878) 88923378 2048 108224173
chr16 88920814 88921966 ZNF274 GTRD no Blood (GM12878) 88923378 1412 108224174
chr16 88920823 88921205 ZNF274 GTRD no Blood (GM12878) 88923378 2173 108224175
chr16 88920829 88922056 ZNF274 GTRD no Blood (GM12878) 88923378 1322 108224176
chr16 88920831 88921282 ZNF274 GTRD no Blood (GM12878) 88923378 2096 108224177
chr16 88920831 88921961 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1417 108224178
chr16 88920843 88921505 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1873 108224179
chr16 88920844 88921164 ZNF274 GTRD no Blood (GM12878) 88923378 2214 108224180
chr16 88920850 88921245 ZNF274 GTRD no Blood (GM12878) 88923378 2133 108224181
chr16 88920851 88921247 ZNF274 GTRD no Blood (GM12878) 88923378 2131 108224182
chr16 88920861 88921281 ZNF274 GTRD no Blood (GM12878) 88923378 2097 108224183
chr16 88920874 88921431 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1947 108224184
chr16 88920915 88921733 ZBTB33 GTRD no Brain (SK-N-SH) 88923378 1645 108224185
chr16 88920928 88921321 ZNF274 GTRD no Blood (GM12878) 88923378 2057 108224186
chr16 88920945 88921279 ZNF143 GTRD no Epithelial (MCF-7) 88923378 2099 108224187
chr16 88921011 88923208 TCF7L2 GTRD no Colon (HCT116) 88923378 170 108224188
chr16 88921085 88921441 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1937 108224189
chr16 88921114 88921595 ZNF274 GTRD no Cervix (HeLa-S3) 88923378 1783 108224190
chr16 88921157 88921619 ZBTB33 GTRD no Brain (SK-N-SH) 88923378 1759 108224191
chr16 88921161 88921676 TCF7L2 GTRD no Colon (HCT116) 88923378 1702 108224192
chr16 88921161 88921922 ZNF274 GTRD no Blood (GM12878) 88923378 1456 108224193
chr16 88921163 88921168 SP1 TRANSFAC yes 88923378 2210 49419190
chr16 88921176 88921180 NFE TRANSFAC yes 88923378 2198 49419191
chr16 88921194 88921207 NFKB1 JASPAR yes 88923378 2171 49419192
chr16 88921194 88921207 NFKB2 JASPAR yes 88923378 2171 49419193
chr16 88921195 88921206 NFKB1 JASPAR yes 88923378 2172 49419194
chr16 88921196 88921205 NF-kappaB TRANSFAC yes 88923378 2173 49419195
chr16 88921196 88921206 NFKB1 JASPAR yes 88923378 2172 49419196
chr16 88921196 88921206 RELA JASPAR yes 88923378 2172 49419197
chr16 88921196 88921207 NFKB1 JASPAR yes 88923378 2171 49419198
chr16 88921196 88921606 ZBTB33 GTRD no Brain (SK-N-SH) 88923378 1772 108224194
chr16 88921197 88921207 RELA JASPAR yes 88923378 2171 49419199
chr16 88921197 88921207 REL JASPAR yes 88923378 2171 49419200
chr16 88921201 88921207 MZF1 JASPAR yes 88923378 2171 49419201
chr16 88921205 88928440 TCF7L2 GTRD no Colon (HCT116) 88923378 2173 108224195
chr16 88921207 88921467 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 88923378 1911 108224196
chr16 88921209 88921229 ESR1 JASPAR yes 88923378 2149 49419202
chr16 88921212 88921230 RARA JASPAR yes 88923378 2148 49419203
chr16 88921213 88921775 ZBTB33 GTRD no Brain (SK-N-SH) 88923378 1603 108224197
chr16 88921220 88921234 BATF3 JASPAR yes 88923378 2144 49419204
chr16 88921238 88921242 NFE TRANSFAC yes 88923378 2136 49419205
chr16 88921246 88929472 ZNF143 GTRD no Epithelial (MCF-7) 88923378 2132 108224198
chr16 88921252 88930071 ZNF143 GTRD no Epithelial (MCF-7) 88923378 2126 108224199
chr16 88921260 88921578 ZNF143 GTRD no Epithelial (MCF-7) 88923378 1800 108224200
chr16 88921263 88921611 ZNF274 GTRD no Blood (GM12878) 88923378 1767 108224201
chr16 88921278 88921664 TCF7L2 GTRD no Colon (HCT116) 88923378 1714 108224202
SNPs associated with GALNS[ENSG00000141012.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr16 88878380 rs8191468 G A,C 1762 Esophagus 0.0634312 4668642
chr16 88918607 rs7188484 G T 0 Heart 0.0832736 4668751
chr16 88925989 rs3784873 A G 2611 Pancreas 0.00872592 4668895
chr16 88918607 rs7188484 G T 0 Spleen 0.0599717 4668751
chr16 88876103 rs2070256 T C 4039 Ovary 0.115446 4668594
chr16 88928599 rs77639392 C G 5221 Uterus 0.420787 4668959
chr16 89039856 rs11859986 A G 116478 Liver 0.0458836 4670688
chr16 88923477 rs114211454 T C 99 Adrenal 0.00505272 4668856
Details of GALNS[ENSG00000141012.8]
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Genomic Location chr16:88880142-88923378[-]
TSS 88923378
Gene Name GALNS
Ensembl ID ENSG00000141012.8
ENTREZID 2588
Uniprot
Q6YL38
Q96I49
P34059
Protein Name
GALNS protein
Galactosamine
N-acetylgalactosamine-6-sulfatase
Expression levels of GALNS[ENSG00000141012.8]
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