EnhancerDB
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Enhancers that regulate PSEN2[ENSG00000143801.12]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 226958265 226962695 enh103218 227057885 95190
Peripheral Blood (MM.1S)
chr1 226964222 226979005 enh27587 227057885 78880
Prostate (PC-3) Cervix (HeLa-S3) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Stomach
chr1 226982985 226990555 enh47301 227057885 67330
Bone Marrow (K562) Blood (T-cell) Blood (GM12878) Uterus Thymus Heart
chr1 226990625 227018206 enh975 227057885 39679
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 226997737 226998213 vista5387 227057885 59672
VISTA
chr1 227002760 227003096 vista5388 227057885 54789
VISTA
chr1 227009018 227009221 vista5389 227057885 48664
VISTA
chr1 227014699 227016924 vista142 227057885 40961
VISTA
chr1 227023725 227038327 enh67302 227057885 19558
Cervix (HeLa-S3) Neural Stem Cells (H9) Brain (SK-N-MC) Lung (PC-9)
chr1 227041625 227045775 enh103219 227057885 12110
Peripheral Blood (MM.1S)
chr1 227048665 227052815 enh79411 227057885 5070
Prostate (PC-3)
chr1 227059945 227067695 enh12731 227057885 2060
Placenta
chr1 227060204 227060463 vista5390 227057885 2319
VISTA
chr1 227105853 227111544 enh43164 227057885 47968
Pancreas Muscle (Myotube) Adrenal Heart
chr1 227106400 227109773 vista143 227057885 48515
VISTA
chr1 227116885 227121035 enh27588 227057885 59000
Astrocyte
chr1 227128899 227129131 vista5391 227057885 71014
VISTA
chr1 227130485 227136967 enh43165 227057885 72600
Pancreas Muscle (Myotube) Uterus Large Intestine
Transcript facotrs that regulate PSEN2[ENSG00000143801.12]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 227060247 227060262 STAT1 JASPAR yes 227057885 2362 35852757
chr1 227060247 227060262 STAT1 JASPAR yes 227057885 2362 118472939
chr1 227060249 227060260 STAT1 JASPAR yes 227057885 2364 35852758
chr1 227060249 227060260 STAT3 JASPAR yes 227057885 2364 35852759
chr1 227060249 227060260 STAT1 JASPAR yes 227057885 2364 118472940
chr1 227060249 227060260 STAT3 JASPAR yes 227057885 2364 118472941
chr1 227060271 227060277 MZF1 JASPAR yes 227057885 2386 35852760
chr1 227060271 227060277 MZF1 JASPAR yes 227057885 2386 118472942
chr1 227060281 227060292 FLI1 JASPAR yes 227057885 2396 35852761
chr1 227060281 227060292 FLI1 JASPAR yes 227057885 2396 118472943
chr1 227060283 227060290 SPI1 JASPAR yes 227057885 2398 35852762
chr1 227060283 227060290 SPI1 JASPAR yes 227057885 2398 118472944
chr1 227060283 227060291 EHF JASPAR yes 227057885 2398 35852763
chr1 227060283 227060291 FEV JASPAR yes 227057885 2398 35852764
chr1 227060283 227060291 EHF JASPAR yes 227057885 2398 118472945
chr1 227060283 227060291 FEV JASPAR yes 227057885 2398 118472946
chr1 227060293 227060305 FOXI1 JASPAR yes 227057885 2408 35852765
chr1 227060293 227060305 FOXI1 JASPAR yes 227057885 2408 118472947
chr1 227060294 227060310 SOX8 JASPAR yes 227057885 2409 35852766
chr1 227060294 227060310 SOX8 JASPAR yes 227057885 2409 118472948
chr1 227060314 227060326 IRF1 JASPAR yes 227057885 2429 35852767
chr1 227060314 227060326 IRF1 JASPAR yes 227057885 2429 118472949
chr1 227060328 227060342 RORA JASPAR yes 227057885 2443 35852768
chr1 227060328 227060342 RORA JASPAR yes 227057885 2443 118472950
chr1 227060336 227060340 ESR1 TRANSFAC yes 227057885 2451 35852769
chr1 227060336 227060340 ESR1 TRANSFAC yes 227057885 2451 118472951
chr1 227060336 227060347 USF1 JASPAR yes 227057885 2451 35852770
chr1 227060336 227060347 USF2 JASPAR yes 227057885 2451 35852771
chr1 227060336 227060347 USF1 JASPAR yes 227057885 2451 118472952
chr1 227060336 227060347 USF2 JASPAR yes 227057885 2451 118472953
chr1 227060355 227060366 FOXB1 JASPAR yes 227057885 2470 35852772
chr1 227060355 227060366 FOXC1 JASPAR yes 227057885 2470 35852773
chr1 227060355 227060366 FOXB1 JASPAR yes 227057885 2470 118472954
chr1 227060355 227060366 FOXC1 JASPAR yes 227057885 2470 118472955
chr1 227060357 227060365 FOXO3 JASPAR yes 227057885 2472 35852774
chr1 227060357 227060365 FOXO3 JASPAR yes 227057885 2472 118472956
chr1 227060370 227060375 SP1 TRANSFAC yes 227057885 2485 35852775
chr1 227060370 227060375 SP1 TRANSFAC yes 227057885 2485 118472957
chr1 227060378 227060388 TFAP4 JASPAR yes 227057885 2493 35852776
chr1 227060378 227060388 TFAP4 JASPAR yes 227057885 2493 118472958
chr1 227060379 227060392 SCRT2 JASPAR yes 227057885 2494 35852777
chr1 227060379 227060392 SCRT2 JASPAR yes 227057885 2494 118472959
chr1 227060382 227060394 IRF1 JASPAR yes 227057885 2497 35852778
chr1 227060382 227060394 IRF1 JASPAR yes 227057885 2497 118472960
chr1 227060383 227060401 IRF2 JASPAR yes 227057885 2498 35852779
chr1 227060383 227060401 IRF2 JASPAR yes 227057885 2498 118472961
chr1 227060388 227060400 IRF1 JASPAR yes 227057885 2503 35852780
chr1 227060388 227060400 IRF1 JASPAR yes 227057885 2503 118472962
chr1 227060388 227060402 IRF7 JASPAR yes 227057885 2503 35852781
chr1 227060388 227060402 IRF8 JASPAR yes 227057885 2503 35852782
chr1 227060388 227060402 IRF7 JASPAR yes 227057885 2503 118472963
chr1 227060388 227060402 IRF8 JASPAR yes 227057885 2503 118472964
chr1 227060414 227060419 TFAP2A TRANSFAC yes 227057885 2529 35852783
chr1 227060414 227060419 TFAP2A TRANSFAC yes 227057885 2529 118472965
chr1 227060414 227060420 MZF1 JASPAR yes 227057885 2529 35852784
chr1 227060414 227060420 MZF1 JASPAR yes 227057885 2529 118472966
chr1 227060417 227060438 MAFG JASPAR yes 227057885 2532 35852785
chr1 227060417 227060438 MAFG JASPAR yes 227057885 2532 118472967
chr1 227060419 227060433 GATA2 JASPAR yes 227057885 2534 35852786
chr1 227060419 227060433 GATA2 JASPAR yes 227057885 2534 118472968
chr1 227060421 227060427 GATA1 TRANSFAC yes 227057885 2536 35852787
chr1 227060421 227060427 GATA1 TRANSFAC yes 227057885 2536 118472969
chr1 227060421 227060429 GATA5 JASPAR yes 227057885 2536 35852788
chr1 227060421 227060429 GATA5 JASPAR yes 227057885 2536 118472970
chr1 227060422 227060440 MAFF JASPAR yes 227057885 2537 35852789
chr1 227060422 227060440 MAFF JASPAR yes 227057885 2537 118472971
chr1 227060436 227060440 YY1 TRANSFAC yes 227057885 2551 35852790
chr1 227060436 227060440 YY1 TRANSFAC yes 227057885 2551 118472972
chr1 227060451 227060459 TBX15 JASPAR yes 227057885 2566 35852791
chr1 227060451 227060459 TBX15 JASPAR yes 227057885 2566 118472973
chr1 227060451 227060460 ZEB1 JASPAR yes 227057885 2566 35852792
chr1 227060451 227060460 ZEB1 JASPAR yes 227057885 2566 118472974
chr1 227060452 227060462 FIGLA JASPAR yes 227057885 2567 35852793
chr1 227060452 227060462 TCF3 JASPAR yes 227057885 2567 35852794
chr1 227060452 227060462 TCF4 JASPAR yes 227057885 2567 35852795
chr1 227060452 227060462 FIGLA JASPAR yes 227057885 2567 118472975
chr1 227060452 227060462 TCF3 JASPAR yes 227057885 2567 118472976
chr1 227060452 227060462 TCF4 JASPAR yes 227057885 2567 118472977
chr1 227060453 227060462 SNAI2 JASPAR yes 227057885 2568 35852796
chr1 227060453 227060462 SNAI2 JASPAR yes 227057885 2568 118472978
chr1 227060454 227060459 USF2 TRANSFAC yes 227057885 2569 35852797
chr1 227060454 227060459 USF2 TRANSFAC yes 227057885 2569 118472979
chr1 227060455 227060461 PTF TRANSFAC yes 227057885 2570 35852798
chr1 227060455 227060461 PTF TRANSFAC yes 227057885 2570 118472980
SNPs associated with PSEN2[ENSG00000143801.12], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 226980517 rs75323354 A G 77368 Esophagus 0.266722 994753
chr1 226811067 rs74704570 C T 246818 Heart 0.248365 993189
chr1 227017031 rs9660802 T C 40854 Pancreas 6.75826e-05 995201
chr1 226714204 rs10916006 A G 343681 Breast 0.029306 992659
chr1 227616266 rs34321718 G A 532460 Ovary 0.16561 998194
chr1 226617273 rs79937858 C T 440612 Uterus 0.400083 991844
chr1 226104283 rs76889922 C T 953602 Liver 0.366302 988505
chr1 226676767 rs597713 C T 381118 Stomach 0.284918 992510
chr1 227004367 rs6426547 A G 53518 Adrenal 0.000257982 995052
Details of PSEN2[ENSG00000143801.12]
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Genomic Location chr1:227057885-227083806[+]
TSS 227057885
Gene Name PSEN2
Ensembl ID ENSG00000143801.12
ENTREZID 5664
Uniprot
P49810
Protein Name
Presenilin
Presenilin-2
Expression levels of PSEN2[ENSG00000143801.12]
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