EnhancerDB
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Enhancers that regulate LAD1[ENSG00000159166.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 201263092 201282279 enh12518 201368736 86457
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Lung (PC-9) Brain (SK-N-SH) Bone (Osteoblast) Muscle (A673) Placenta Thyroid Muscle (Myoblast) Breast Thymus Heart
chr1 201277004 201277220 vista4543 201368736 91516
VISTA
chr1 201277329 201277484 vista4544 201368736 91252
VISTA
chr1 201280694 201280963 vista4545 201368736 87773
VISTA
chr1 201295169 201295564 vista4546 201368736 73172
VISTA
chr1 201300805 201308016 enh61947 201368736 60720
Esophagus Muscle (A673) Prostate (RWPE1)
chr1 201311669 201327595 enh12519 201368736 41141
Prostate (PC-3) Epithelial (MCF-7) Prostate (RWPE1) Esophagus Muscle (A673) Placenta Pancreas Neural Stem Cells (H9) Heart
chr1 201348285 201352435 enh108393 201368736 16301
Lung (PC-9)
chr1 201366439 201366550 vista4547 201368736 2186
VISTA
chr1 201391465 201395615 enh874 201368736 22729
Blood (Karpas-422)
chr1 201414985 201433510 enh875 201368736 46249
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 201424936 201425126 vista4548 201368736 56200
VISTA
chr1 201426190 201426373 vista4549 201368736 57454
VISTA
chr1 201431088 201431253 vista4550 201368736 62352
VISTA
chr1 201440605 201452315 enh876 201368736 71869
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Bone (Osteoblast) Muscle (A673) Placenta Blood (Karpas-422) Pancreas Thymus
chr1 201445401 201445412 vista4551 201368736 76665
VISTA
chr1 201449602 201449822 vista4552 201368736 80866
VISTA
chr1 201463125 201475335 enh12520 201368736 94389
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Large Intestine Bone (Osteoblast) Lung Blood (OCI-LY7) Placenta Muscle (Myoblast) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Heart
chr1 201463619 201463933 vista4553 201368736 94883
VISTA
Transcript facotrs that regulate LAD1[ENSG00000159166.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 201366002 201366578 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 201368736 2158 107856165
chr1 201366004 201366488 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 201368736 2248 107856166
chr1 201366041 201366525 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 201368736 2211 107856167
chr1 201366041 201366581 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 201368736 2155 107856168
chr1 201366107 201367612 ZNF143 GTRD no Epithelial (MCF-7) 201368736 1124 107856169
chr1 201366124 201366524 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 201368736 2212 107856170
chr1 201366144 201366454 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 201368736 2282 107856171
chr1 201366189 201366479 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 201368736 2257 107856172
chr1 201366203 201366483 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 201368736 2253 107856173
chr1 201366213 201366489 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 201368736 2247 107856174
chr1 201366218 201366488 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 201368736 2248 107856175
chr1 201366231 201366615 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 201368736 2121 107856176
chr1 201366291 201366513 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 201368736 2223 107856177
chr1 201366445 201366451 NFIC JASPAR yes 201368736 2285 118431571
chr1 201366449 201366461 NHLH1 JASPAR yes 201368736 2275 118431572
chr1 201366450 201366460 NHLH1 JASPAR yes 201368736 2276 118431573
chr1 201366461 201366470 THAP1 JASPAR yes 201368736 2266 118431574
chr1 201366462 201366475 TFAP2A JASPAR yes 201368736 2261 118431575
chr1 201366462 201366475 TFAP2B JASPAR yes 201368736 2261 118431576
chr1 201366462 201366475 TFAP2C JASPAR yes 201368736 2261 118431577
chr1 201366497 201366503 MAZ TRANSFAC yes 201368736 2233 118431578
chr1 201366501 201366505 LFA1 TRANSFAC yes 201368736 2231 118431579
chr1 201366505 201366525 ESR1 JASPAR yes 201368736 2211 118431580
chr1 201366511 201366516 SP1 TRANSFAC yes 201368736 2220 118431581
chr1 201366513 201366526 TFAP2A JASPAR yes 201368736 2210 118431582
chr1 201366532 201366543 EBF1 JASPAR yes 201368736 2193 118431583
chr1 201366533 201366539 MZF1 JASPAR yes 201368736 2197 118431584
SNPs associated with LAD1[ENSG00000159166.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 201369248 rs2719177 A G 512 Heart 0.0358888 853395
chr1 200447884 rs138984301 G A 894488 Pancreas 0.00403183 847953
chr1 202076403 rs4073750 A G 707667 Breast 0.115098 860089
chr1 201091820 rs61819464 T G 250552 Spleen 0.136545 851101
chr1 200375209 rs1128817 G A 967163 Uterus 0.407395 847295
chr1 201373844 rs1107256 G A 5108 Lung 0.14115 853435
chr1 201446742 rs398053710 TGAG T 78006 Adrenal 0.442802 854027
Details of LAD1[ENSG00000159166.9]
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Genomic Location chr1:201342372-201368736[-]
TSS 201368736
Gene Name LAD1
Ensembl ID ENSG00000159166.9
ENTREZID 3898
Uniprot
O00515
Protein Name
Ladinin-1
Expression levels of LAD1[ENSG00000159166.9]
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