EnhancerDB
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Enhancers that regulate SPDYA[ENSG00000163806.11]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr2 28895045 28921335 enh18395 29005383 84048
Bone Marrow (K562) Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Heart
chr2 28922565 28927508 enh53007 29005383 77875
Large Intestine Heart
chr2 28928585 28946675 enh18396 29005383 58708
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Kidney Epithelial (MCF-7) Skin (Keratinocyte) Stomach Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673)
chr2 28936560 28936756 vista30855 29005383 68627
VISTA
chr2 28939068 28939564 vista30856 29005383 65819
VISTA
chr2 28947285 28954855 enh81603 29005383 50528
Thyroid Prostate (PC-3) Uterus
chr2 28953773 28954089 vista30857 29005383 51294
VISTA
chr2 28957045 28961255 enh88439 29005383 44128
Cervix (HeLa-S3) Brain (SK-N-SH) Liver Thyroid Pancreas Uterus Stomach
chr2 28975645 28982655 enh18397 29005383 22728
Astrocyte Placenta Neural Stem Cells (H9) Uterus
chr2 28976141 28976573 vista30858 29005383 28810
VISTA
chr2 28986440 28990498 enh102628 29005383 14885
Bone (Osteoblast)
chr2 28991205 28997635 enh5379 29005383 7748
Blood (Karpas-422) Lung (PC-9)
chr2 28991945 28992473 vista30859 29005383 12910
VISTA
chr2 29009696 29009902 vista30860 29005383 4313
VISTA
chr2 29026080 29026331 vista30861 29005383 20697
VISTA
chr2 29050679 29050871 vista30862 29005383 45296
VISTA
chr2 29055098 29055343 vista30863 29005383 49715
VISTA
chr2 29060448 29060640 vista30864 29005383 55065
VISTA
chr2 29075660 29075992 vista30865 29005383 70277
VISTA
chr2 29076185 29080335 enh81604 29005383 70802
Prostate (PC-3)
Transcript facotrs that regulate SPDYA[ENSG00000163806.11]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr2 29009714 29009720 TCF4 TRANSFAC yes 29005383 4331 22026353
chr2 29009718 29009734 POU4F2 JASPAR yes 29005383 4335 22026354
chr2 29009718 29009734 POU4F3 JASPAR yes 29005383 4335 22026355
chr2 29009721 29009725 YY1 TRANSFAC yes 29005383 4338 22026356
chr2 29009736 29009741 SP1 TRANSFAC yes 29005383 4353 22026357
chr2 29009746 29009750 YY1 TRANSFAC yes 29005383 4363 22026358
chr2 29009746 29009763 BCL6B JASPAR yes 29005383 4363 22026359
chr2 29009748 29009769 MAFG JASPAR yes 29005383 4365 22026360
chr2 29009782 29009797 STAT2 JASPAR yes 29005383 4399 22026361
chr2 29009804 29009815 FOXH1 JASPAR yes 29005383 4421 22026362
chr2 29009805 29009811 ZNF354C JASPAR yes 29005383 4422 22026363
chr2 29009855 29009860 GATA2 JASPAR yes 29005383 4472 22026364
chr2 29009861 29009876 SOX21 JASPAR yes 29005383 4478 22026365
chr2 29009874 29009879 MYB TRANSFAC yes 29005383 4491 22026366
chr2 29009888 29009896 HOXA5 JASPAR yes 29005383 4505 22026367
SNPs associated with SPDYA[ENSG00000163806.11], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr2 29348059 rs6547911 G A 274582 Esophagus 0.149711 5613136
chr2 29315005 rs71444406 G A,C 241528 Esophagus 0.342067 5612856
chr2 29363476 rs12714267 G A 289999 Breast 0.349289 5613259
chr2 29582915 rs7591988 A G 509438 Uterus 0.0190976 5614171
chr2 28949773 rs111534567 A G 55610 Thyroid 0.105835 5611322
chr2 28989975 rs6710080 A G 15408 Liver 0.373547 5611635
chr2 28293299 rs13409819 C A 712084 Stomach 0.22289 5605687
Details of SPDYA[ENSG00000163806.11]
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Genomic Location chr2:29005383-29073477[+]
TSS 29005383
Gene Name SPDYA
Ensembl ID ENSG00000163806.11
ENTREZID 245711
Uniprot
Q5MJ70
Protein Name
Speedy protein A
Expression levels of SPDYA[ENSG00000163806.11]
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