EnhancerDB
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Enhancers that regulate COPG1[ENSG00000181789.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 128896205 128901595 enh54342 128968449 66854
Cervix (HeLa-S3) Large Intestine Esophagus Pancreas (Panc1) Uterus
chr3 128912245 128918495 enh20925 128968449 49954
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Uterus Heart
chr3 128922053 128933133 enh63198 128968449 35316
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Ovary Esophagus Stomach Colon (HCT116) Pancreas Lung (PC-9) Breast Pancreas (Panc1) Uterus Epithelial (MCF-7)
chr3 128941525 128955643 enh7525 128968449 12806
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
chr3 128945338 128945482 vista42394 128968449 22967
VISTA
chr3 128946609 128946967 vista42395 128968449 21482
VISTA
chr3 128947996 128948470 vista42396 128968449 19979
VISTA
chr3 128949165 128949421 vista42397 128968449 19028
VISTA
chr3 128950287 128950475 vista42398 128968449 17974
VISTA
chr3 128952340 128952748 vista42399 128968449 15701
VISTA
chr3 128954316 128954512 vista42400 128968449 13937
VISTA
chr3 128955825 128961615 enh20926 128968449 6834
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Placenta Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myotube) Neural Stem Cells (H9) Stomach
chr3 128957834 128958071 vista42401 128968449 10378
VISTA
chr3 128958880 128959235 vista42402 128968449 9214
VISTA
chr3 128964355 128964687 vista42403 128968449 3762
VISTA
chr3 128967680 128967946 vista42404 128968449 503
VISTA
chr3 128998585 129004475 enh7526 128968449 30136
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Prostate (RWPE1) Esophagus Blood (GM12878) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Blood (T-cell) Stomach
chr3 129022311 129033875 enh7527 128968449 53862
Skin (Keratinocyte) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Esophagus Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Breast Blood (T-cell) Heart
chr3 129040805 129045007 enh90203 128968449 72356
Peripheral Blood (MM.1S) Prostate (RWPE1)
chr3 129045605 129049755 enh105376 128968449 77156
Peripheral Blood (MM.1S)
chr3 129052245 129056395 enh105377 128968449 83796
Peripheral Blood (MM.1S)
chr3 129060132 129067823 enh20927 128968449 91683
Placenta Colon (HCT116) Brain (SK-N-SH) Heart
Transcript facotrs that regulate COPG1[ENSG00000181789.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 128964289 128964851 STAT1 UCSC Txn Factor no Conserved 128968449 3598 108530344
chr3 128964355 128964359 H1TF2 TRANSFAC yes 128968449 4090 71050931
chr3 128964355 128964359 NFE TRANSFAC yes 128968449 4090 71050932
chr3 128964355 128964359 SRF TRANSFAC yes 128968449 4090 71050933
chr3 128964361 128964374 EOMES JASPAR yes 128968449 4075 71050934
chr3 128964363 128964373 TBR1 JASPAR yes 128968449 4076 71050935
chr3 128964363 128964374 TBX20 JASPAR yes 128968449 4075 71050936
chr3 128964363 128964374 TBX2 JASPAR yes 128968449 4075 71050937
chr3 128964364 128964374 TBX21 JASPAR yes 128968449 4075 71050938
chr3 128964365 128964373 MGA JASPAR yes 128968449 4076 71050939
chr3 128964365 128964373 TBX15 JASPAR yes 128968449 4076 71050940
chr3 128964365 128964373 TBX1 JASPAR yes 128968449 4076 71050941
chr3 128964365 128964373 TBX4 JASPAR yes 128968449 4076 71050942
chr3 128964365 128964373 TBX5 JASPAR yes 128968449 4076 71050943
chr3 128964398 128964404 TCF4 TRANSFAC yes 128968449 4045 71050944
chr3 128964403 128964408 SP1 TRANSFAC yes 128968449 4041 71050945
chr3 128964404 128964409 SP1 TRANSFAC yes 128968449 4040 71050946
chr3 128964404 128964410 SP1 TRANSFAC yes 128968449 4039 71050947
chr3 128964405 128964413 SP1 TRANSFAC yes 128968449 4036 71050948
chr3 128964405 128964413 WT1 TRANSFAC yes 128968449 4036 71050949
chr3 128964414 128964427 POU2F2 JASPAR yes 128968449 4022 71050950
chr3 128964419 128964434 JUND JASPAR yes 128968449 4015 71050951
chr3 128964420 128964433 JUN JASPAR yes 128968449 4016 71050952
chr3 128964422 128964437 JUND JASPAR yes 128968449 4012 71050953
chr3 128964435 128964441 TBP TRANSFAC yes 128968449 4008 71050954
chr3 128964449 128964455 TCF4 TRANSFAC yes 128968449 3994 71050955
chr3 128964450 128964459 SRY JASPAR yes 128968449 3990 71050956
chr3 128964455 128964458 MYB TRANSFAC yes 128968449 3991 71050957
chr3 128964468 128964476 FOXL1 JASPAR yes 128968449 3973 71050958
chr3 128964482 128964497 MEF2A JASPAR yes 128968449 3952 71050959
chr3 128964483 128964498 MEF2C JASPAR yes 128968449 3951 71050960
chr3 128964484 128964496 MEF2A JASPAR yes 128968449 3953 71050961
chr3 128964486 128964490 YY1 TRANSFAC yes 128968449 3959 71050962
chr3 128964488 128964499 HOXC12 JASPAR yes 128968449 3950 71050963
chr3 128964488 128964499 HOXC13 JASPAR yes 128968449 3950 71050964
chr3 128964488 128964953 CTCF UCSC Txn Factor no Conserved 128968449 3496 108530345
chr3 128964497 128964508 NFIL3 JASPAR yes 128968449 3941 71050965
chr3 128964498 128964509 CEBPA JASPAR yes 128968449 3940 71050966
chr3 128964498 128964510 DBP JASPAR yes 128968449 3939 71050967
chr3 128964498 128964510 HLF JASPAR yes 128968449 3939 71050968
chr3 128964498 128964510 TEF JASPAR yes 128968449 3939 71050969
chr3 128964499 128964510 CEBPB JASPAR yes 128968449 3939 71050970
chr3 128964500 128964511 NFIL3 JASPAR yes 128968449 3938 71050971
chr3 128964505 128964508 MYB TRANSFAC yes 128968449 3941 71050972
chr3 128964520 128964530 NEUROG2 JASPAR yes 128968449 3919 71050973
chr3 128964540 128964544 LFA1 TRANSFAC yes 128968449 3905 71050974
chr3 128964572 128964583 FOXP2 JASPAR yes 128968449 3866 71050975
chr3 128964577 128964587 SREBF2 JASPAR yes 128968449 3862 71050976
chr3 128964577 128964588 USF2 JASPAR yes 128968449 3861 71050977
chr3 128964584 128964599 STAT1 JASPAR yes 128968449 3850 71050978
chr3 128964586 128964597 STAT1 JASPAR yes 128968449 3852 71050979
chr3 128964586 128964597 STAT3 JASPAR yes 128968449 3852 71050980
chr3 128964591 128964598 NFATC2 JASPAR yes 128968449 3851 71050981
chr3 128964595 128964909 RAD21 UCSC Txn Factor no Conserved 128968449 3540 108530346
chr3 128964600 128964604 YY1 TRANSFAC yes 128968449 3845 71050982
chr3 128964600 128964888 SMC3 UCSC Txn Factor no Conserved 128968449 3561 108530347
chr3 128964601 128964611 HOXA13 JASPAR yes 128968449 3838 71050983
chr3 128964601 128964611 HOXB13 JASPAR yes 128968449 3838 71050984
chr3 128964601 128964611 HOXC10 JASPAR yes 128968449 3838 71050985
chr3 128964601 128964611 HOXD11 JASPAR yes 128968449 3838 71050986
chr3 128964601 128964611 HOXD13 JASPAR yes 128968449 3838 71050987
chr3 128964601 128964612 HOXC13 JASPAR yes 128968449 3837 71050988
chr3 128964601 128964612 HOXD12 JASPAR yes 128968449 3837 71050989
chr3 128964602 128964611 CDX1 JASPAR yes 128968449 3838 71050990
chr3 128964659 128964664 MYB TRANSFAC yes 128968449 3785 71050991
chr3 128967684 128967705 IRF1 JASPAR yes 128968449 744 71050992
chr3 128967685 128967688 MYB TRANSFAC yes 128968449 761 71050993
chr3 128967685 128967700 FOXP1 JASPAR yes 128968449 749 71050994
chr3 128967685 128967706 IRF1 JASPAR yes 128968449 743 71050995
chr3 128967688 128967703 FOXP1 JASPAR yes 128968449 746 71050996
chr3 128967689 128967704 STAT2 JASPAR yes 128968449 745 71050997
chr3 128967690 128967705 FOXP1 JASPAR yes 128968449 744 71050998
chr3 128967690 128967711 IRF1 JASPAR yes 128968449 738 71050999
chr3 128967692 128967704 FOXC2 JASPAR yes 128968449 745 71051000
chr3 128967693 128967704 FOXP2 JASPAR yes 128968449 745 71051001
chr3 128967695 128967707 IRF1 JASPAR yes 128968449 742 71051002
chr3 128967696 128967717 IRF1 JASPAR yes 128968449 732 71051003
chr3 128967700 128967714 SPI1 JASPAR yes 128968449 735 71051004
chr3 128967716 128967730 MTF1 JASPAR yes 128968449 719 71051005
chr3 128967775 128967790 TFAP2A JASPAR yes 128968449 659 71051006
chr3 128967808 128967812 LFA1 TRANSFAC yes 128968449 637 71051007
chr3 128967845 128967851 TBP TRANSFAC yes 128968449 598 71051008
chr3 128967850 128967866 GLIS1 JASPAR yes 128968449 583 71051009
chr3 128967855 128967867 ZBTB7C JASPAR yes 128968449 582 71051010
chr3 128967892 128967900 TBX15 JASPAR yes 128968449 549 71051011
chr3 128967892 128967903 E2F6 JASPAR yes 128968449 546 71051012
chr3 128967893 128967898 SP1 TRANSFAC yes 128968449 551 71051013
SNPs associated with COPG1[ENSG00000181789.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 128428187 rs73196952 C A 540262 Esophagus 0.149882 7021950
chr3 129098559 rs79450677 G A 101945 Heart 0.144968 7025627
chr3 128291603 rs77948291 C T 676846 Breast 0.31627 7021071
chr3 129100015 rs6439180 T C 103401 Uterus 0.339261 7025661
chr3 128773391 rs199662029 C CA 195058 Liver 0.142318 7023893
chr3 129033766 rs8499 G A 37152 Lung 0.0937745 7025044
chr3 128072502 rs11711096 G A 895947 Adrenal 0.157747 7018888
Details of COPG1[ENSG00000181789.10]
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Genomic Location chr3:128968449-128996614[+]
TSS 128968449
Gene Name COPG1
Ensembl ID ENSG00000181789.10
ENTREZID 22820
Uniprot
Q9Y678
Protein Name
Coatomer subunit gamma-1
Expression levels of COPG1[ENSG00000181789.10]
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