EnhancerDB
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Enhancers that regulate PALM[ENSG00000099864.13]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 653633 661158 enh44617 708953 47795
Muscle (Myoblast) Skin (Keratinocyte) Muscle (Myotube) Brain (SK-N-SH)
chr19 659616 659868 vista28095 708953 49085
VISTA
chr19 660293 660821 vista28096 708953 48132
VISTA
chr19 661410 661735 vista28097 708953 47218
VISTA
chr19 662216 662510 vista28098 708953 46443
VISTA
chr19 673705 680175 enh17835 708953 28778
Placenta Uterus
chr19 675402 675838 vista28099 708953 33115
VISTA
chr19 678997 679265 vista28100 708953 29688
VISTA
chr19 710143 710459 vista28101 708953 1190
VISTA
chr19 718125 722275 enh109819 708953 9172
Stomach
chr19 719892 720284 vista28102 708953 10939
VISTA
chr19 725834 729984 enh65163 708953 16881
Heart
chr19 735865 745615 enh48146 708953 26912
Liver (HepG2) Prostate (RWPE1) Large Intestine Spleen Thymus Stomach
chr19 750220 755228 enh44618 708953 41267
Muscle (Myotube)
chr19 751766 752111 vista28103 708953 42813
VISTA
chr19 752652 753043 vista28104 708953 43699
VISTA
chr19 753188 753320 vista28105 708953 44235
VISTA
chr19 766416 774574 enh32870 708953 57463
Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Colon (HCT116) Thyroid Muscle (Myoblast) Pancreas Muscle (Myotube) Stomach
chr19 774584 785655 enh17836 708953 65631
Skin (Keratinocyte) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Muscle (A673) Placenta Thyroid Uterus Lung (PC-9) Neural Stem Cells (H9) Stomach
chr19 778993 779222 vista28106 708953 70040
VISTA
chr19 782330 783005 vista28107 708953 73377
VISTA
chr19 786808 791995 enh17837 708953 77855
Bone Marrow (K562) Esophagus Bone (Osteoblast) Stomach Placenta Neural Stem Cells (H9) Heart
chr19 789308 789721 vista28108 708953 80355
VISTA
chr19 791303 791398 vista28109 708953 82350
VISTA
chr19 791656 792058 vista28110 708953 82703
VISTA
chr19 793985 803515 enh99530 708953 85032
Uterus Blood (T-cell) Stomach
chr19 800594 800755 vista28111 708953 91641
VISTA
Transcript facotrs that regulate PALM[ENSG00000099864.13]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 707593 710844 TCF7L2 GTRD no Colon (HCT116) 708953 1360 108345746
chr19 707746 710286 ZNF274 GTRD no Bone Marrow (K562) 708953 1207 108345747
chr19 707838 710746 ZNF274 GTRD no Bone Marrow (K562) 708953 1115 108345748
chr19 708019 711119 TCF7L2 GTRD no Colon (HCT116) 708953 934 108345749
chr19 708062 710359 ZNF274 GTRD no Bone Marrow (K562) 708953 891 108345750
chr19 708076 710444 ZNF274 GTRD no Bone Marrow (K562) 708953 877 108345751
chr19 708127 711089 TCF7L2 GTRD no Colon (HCT116) 708953 826 108345752
chr19 708184 711223 TCF7L2 GTRD no Colon (HCT116) 708953 769 108345753
chr19 708229 711089 TCF7L2 GTRD no Colon (HCT116) 708953 724 108345754
chr19 708278 711036 TCF7L2 GTRD no Colon (HCT116) 708953 675 108345755
chr19 709393 710186 ZNF143 GTRD no Epithelial (MCF-7) 708953 440 108345756
chr19 709991 710362 ZNF143 GTRD no Epithelial (MCF-7) 708953 1038 108345757
chr19 710018 710585 P63 GTRD no Skin (Keratinocyte) 708953 1065 108345758
chr19 710085 711122 TCF7L2 GTRD no Colon (HCT116) 708953 1132 108345759
chr19 710156 710170 PLAG1 JASPAR yes 708953 1203 70776821
chr19 710156 710176 ESR1 JASPAR yes 708953 1203 70776822
chr19 710172 710182 SP1 JASPAR yes 708953 1219 70776823
chr19 710184 710696 TCF7L2 GTRD no Colon (HCT116) 708953 1231 108345760
chr19 710187 710998 ZNF274 GTRD no Blood (GM12878) 708953 1234 108345761
chr19 710207 710221 EBF1 JASPAR yes 708953 1254 70776824
chr19 710213 710226 NFKB1 JASPAR yes 708953 1260 70776825
chr19 710213 710226 NFKB2 JASPAR yes 708953 1260 70776826
chr19 710214 710224 NFKB1 JASPAR yes 708953 1261 70776827
chr19 710215 710232 PAX1 JASPAR yes 708953 1262 70776828
chr19 710215 710232 PAX9 JASPAR yes 708953 1262 70776829
chr19 710220 710234 RXRB JASPAR yes 708953 1267 70776830
chr19 710220 710234 RXRG JASPAR yes 708953 1267 70776831
chr19 710221 710235 PLAG1 JASPAR yes 708953 1268 70776832
chr19 710223 710231 USF1 TRANSFAC yes 708953 1270 70776833
chr19 710227 710243 GLIS1 JASPAR yes 708953 1274 70776834
chr19 710236 710241 SP1 TRANSFAC yes 708953 1283 70776835
chr19 710237 710248 TFAP2A JASPAR yes 708953 1284 70776836
chr19 710237 710248 TFAP2B JASPAR yes 708953 1284 70776837
chr19 710237 710248 TFAP2C JASPAR yes 708953 1284 70776838
chr19 710238 710247 TFAP2A JASPAR yes 708953 1285 70776839
chr19 710238 710535 ZNF274 GTRD no Bone Marrow (K562) 708953 1285 108345762
chr19 710242 710252 SP1 JASPAR yes 708953 1289 70776840
chr19 710249 710254 SP1 TRANSFAC yes 708953 1296 70776841
chr19 710250 710270 PPARG JASPAR yes 708953 1297 70776842
chr19 710253 710258 SP1 TRANSFAC yes 708953 1300 70776843
chr19 710262 710273 E2F6 JASPAR yes 708953 1309 70776844
chr19 710266 710277 E2F6 JASPAR yes 708953 1313 70776845
chr19 710278 710292 IRF8 JASPAR yes 708953 1325 70776846
chr19 710279 710293 STAT1 JASPAR yes 708953 1326 70776847
chr19 710321 710327 SOX10 JASPAR yes 708953 1368 70776848
chr19 710330 710345 NR2C2 JASPAR yes 708953 1377 70776849
chr19 710333 710343 SP1 JASPAR yes 708953 1380 70776850
chr19 710347 710355 SP1 TRANSFAC yes 708953 1394 70776851
chr19 710347 710357 SP1 JASPAR yes 708953 1394 70776852
chr19 710348 710354 SP1 TRANSFAC yes 708953 1395 70776853
chr19 710348 710358 SP1 JASPAR yes 708953 1395 70776854
chr19 710349 710356 SP1 TRANSFAC yes 708953 1396 70776855
chr19 710350 710355 SP1 TRANSFAC yes 708953 1397 70776856
chr19 710350 710356 SP1 TRANSFAC yes 708953 1397 70776857
chr19 710355 710374 REST JASPAR yes 708953 1402 70776858
chr19 710361 711085 ZNF143 GTRD no Epithelial (MCF-7) 708953 1408 108345763
chr19 710370 710384 PLAG1 JASPAR yes 708953 1417 70776859
chr19 710373 710384 EBF1 JASPAR yes 708953 1420 70776860
chr19 710404 710424 RREB1 JASPAR yes 708953 1451 70776861
chr19 710404 710640 ZNF274 GTRD no Bone Marrow (K562) 708953 1451 108345764
chr19 710406 710426 RREB1 JASPAR yes 708953 1453 70776862
chr19 710407 710427 RREB1 JASPAR yes 708953 1454 70776863
chr19 710408 710418 ZNF740 JASPAR yes 708953 1455 70776864
chr19 710411 710431 RREB1 JASPAR yes 708953 1458 70776865
chr19 710412 710422 SP1 JASPAR yes 708953 1459 70776866
chr19 710412 710422 SP1 TRANSFAC yes 708953 1459 70776867
chr19 710413 710423 SP1 JASPAR yes 708953 1460 70776868
chr19 710425 710440 FOXP1 JASPAR yes 708953 1472 70776869
chr19 710426 710437 FOXP2 JASPAR yes 708953 1473 70776870
chr19 710426 710440 FOXF2 JASPAR yes 708953 1473 70776871
chr19 710427 710435 FOXG1 JASPAR yes 708953 1474 70776872
chr19 710427 710435 FOXO3 JASPAR yes 708953 1474 70776873
chr19 710429 710437 GATA3 JASPAR yes 708953 1476 70776874
SNPs associated with PALM[ENSG00000099864.13], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr19 1662053 rs1004514 T A 913724 Esophagus 0.070046 5377389
chr19 1649322 rs75428938 C T 900993 Esophagus 0.19573 5377201
chr19 946284 rs397859289 CAG C 197955 Heart 0.199477 5369886
chr19 727105 rs113692988 G A 0 Breast 0.18782 5366695
chr19 1226772 rs2277746 C T 478443 Spleen 0.146351 5373502
chr19 718617 rs11881732 C T 0 Ovary 0.193001 5366598
chr19 867041 rs147381547 C CACCCCCGTGGCGGCTGG 118712 Uterus 0.163699 5368668
chr19 531576 rs17425535 C T 177377 Thyroid 0.141475 5364919
chr19 736491 rs79787516 C T 0 Lung 0.136246 5366803
Details of PALM[ENSG00000099864.13]
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Genomic Location chr19:708953-748329[+]
TSS 708953
Gene Name PALM
Ensembl ID ENSG00000099864.13
ENTREZID 5064
Uniprot
A0A024R1Y6
O75781
A0A024R207
Protein Name
isoform CRA_a
isoform CRA_b
Paralemmin
Paralemmin
Paralemmin-1
Expression levels of PALM[ENSG00000099864.13]
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