EnhancerDB
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  3. GRIN3B[ENSG00000116032.5]
Enhancers that regulate GRIN3B[ENSG00000116032.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 903685 911642 enh4947 1000418 88776
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Stomach Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas Thymus Epithelial (MCF-7)
chr19 907464 907615 vista28116 1000418 92803
VISTA
chr19 908605 908810 vista28117 1000418 91608
VISTA
chr19 909116 909504 vista28118 1000418 90914
VISTA
chr19 925071 925217 vista28119 1000418 75201
VISTA
chr19 927725 963215 enh4948 1000418 37203
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung Blood (GM12878) Stomach Placenta Colon (HCT116) Thyroid Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Heart
chr19 928103 928378 vista28120 1000418 72040
VISTA
chr19 933164 933556 vista28121 1000418 66862
VISTA
chr19 934999 935434 vista28122 1000418 64984
VISTA
chr19 947564 948104 vista28123 1000418 52314
VISTA
chr19 951651 951841 vista28124 1000418 48577
VISTA
chr19 953220 953565 vista28125 1000418 46853
VISTA
chr19 954903 955312 vista28126 1000418 45106
VISTA
chr19 958944 959162 vista28127 1000418 41256
VISTA
chr19 980461 985307 enh102590 1000418 15111
Bone (Osteoblast)
chr19 980601 980803 vista28128 1000418 19615
VISTA
chr19 996390 996745 vista28129 1000418 3673
VISTA
chr19 1015145 1019295 enh4949 1000418 14727
Blood (Karpas-422)
chr19 1016614 1016952 vista28130 1000418 16196
VISTA
chr19 1028160 1028923 vista28131 1000418 27742
VISTA
chr19 1036205 1042115 enh91203 1000418 35787
Bone Marrow (K562)
chr19 1069175 1069494 vista28132 1000418 68757
VISTA
chr19 1069805 1079175 enh4950 1000418 69387
Prostate (RWPE1) Blood (T-cell) Blood (Karpas-422)
chr19 1080605 1085615 enh4951 1000418 80187
Blood (Karpas-422)
chr19 1085284 1085426 vista28133 1000418 84866
VISTA
chr19 1093945 1098095 enh99531 1000418 93527
Uterus
Transcript facotrs that regulate GRIN3B[ENSG00000116032.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 990360 997097 TCF7L2 GTRD no Colon (HCT116) 1000418 3321 108349364
chr19 990623 997130 TCF7L2 GTRD no Colon (HCT116) 1000418 3288 108349365
chr19 992544 996829 TCF7L2 GTRD no Colon (HCT116) 1000418 3589 108349366
chr19 992904 997683 TCF7L2 GTRD no Colon (HCT116) 1000418 2735 108349367
chr19 993648 996931 TCF7L2 GTRD no Colon (HCT116) 1000418 3487 108349368
chr19 994278 997010 ZNF274 GTRD no Blood (GM12878) 1000418 3408 108349369
chr19 994990 996869 ZNF274 GTRD no Bone Marrow (K562) 1000418 3549 108349370
chr19 995297 996921 ZNF274 GTRD no Bone Marrow (K562) 1000418 3497 108349371
chr19 995600 996926 ZBTB33 GTRD no Lung (A549) 1000418 3492 108349372
chr19 995603 996873 TCF7L2 GTRD no Colon (HCT116) 1000418 3545 108349373
chr19 995609 996549 ZNF143 GTRD no Epithelial (MCF-7) 1000418 3869 108349374
chr19 995612 997037 TCF7L2 GTRD no Colon (HCT116) 1000418 3381 108349375
chr19 995634 999858 ZBTB33 GTRD no Lung (A549) 1000418 560 108349376
chr19 995700 996890 ZBTB33 GTRD no Brain (SK-N-SH) 1000418 3528 108349377
chr19 995714 996986 ZNF274 GTRD no Bone Marrow (K562) 1000418 3432 108349378
chr19 995762 996910 ZNF274 GTRD no Bone Marrow (K562) 1000418 3508 108349379
chr19 995785 996785 TCF7L2 GTRD no Colon (HCT116) 1000418 3633 108349380
chr19 995823 997007 ZNF274 GTRD no Liver (HepG2) 1000418 3411 108349381
chr19 995841 997073 ZNF274 GTRD no Blood (GM12878) 1000418 3345 108349382
chr19 995849 997055 ZNF274 GTRD no Blood (GM12878) 1000418 3363 108349383
chr19 995853 996837 ZBTB33 GTRD no Lung (A549) 1000418 3581 108349384
chr19 995855 996848 ZBTB33 GTRD no Brain (SK-N-SH) 1000418 3570 108349385
chr19 995855 996850 ZNF274 GTRD no Bone Marrow (K562) 1000418 3568 108349386
chr19 995858 996948 ZNF274 GTRD no Bone Marrow (K562) 1000418 3470 108349387
chr19 995865 997029 ZNF274 GTRD no Blood (GM12878) 1000418 3389 108349388
chr19 995873 996940 ZNF274 GTRD no Bone Marrow (K562) 1000418 3478 108349389
chr19 995884 997079 ZNF274 GTRD no Blood (GM12878) 1000418 3339 108349390
chr19 995886 996910 ZNF274 GTRD no Bone Marrow (K562) 1000418 3508 108349391
chr19 995889 997054 ZNF274 GTRD no Bone Marrow (K562) 1000418 3364 108349392
chr19 995893 996990 ZNF274 GTRD no Bone Marrow (K562) 1000418 3428 108349393
chr19 995901 998591 ZBTB33 GTRD no Lung (A549) 1000418 1827 108349394
chr19 995921 996894 ZNF274 GTRD no Liver (HepG2) 1000418 3524 108349395
chr19 995921 996972 ZBTB33 GTRD no Lung (A549) 1000418 3446 108349396
chr19 995931 996974 ZNF274 GTRD no Liver (HepG2) 1000418 3444 108349397
chr19 995940 996952 ZNF274 GTRD no Blood (GM12878) 1000418 3466 108349398
chr19 995959 996822 ZNF274 GTRD no Bone Marrow (K562) 1000418 3596 108349399
chr19 995970 996751 ZNF274 GTRD no Liver (HepG2) 1000418 3667 108349400
chr19 995970 996852 ZNF274 GTRD no Bone Marrow (K562) 1000418 3566 108349401
chr19 995976 996842 ZNF274 GTRD no Bone Marrow (K562) 1000418 3576 108349402
chr19 995982 996840 ZNF274 GTRD no Bone Marrow (K562) 1000418 3578 108349403
chr19 995986 996879 ZNF274 GTRD no Liver (HepG2) 1000418 3539 108349404
chr19 995994 996993 P63 GTRD no Skin (Keratinocyte) 1000418 3425 108349405
chr19 996006 996731 ZBTB33 GTRD no Lung (A549) 1000418 3687 108349406
chr19 996009 996627 ZBTB33 GTRD no Lung (A549) 1000418 3791 108349407
chr19 996010 996891 ZNF274 GTRD no Liver (HepG2) 1000418 3527 108349408
chr19 996016 996831 ZNF274 GTRD no Bone Marrow (K562) 1000418 3587 108349409
chr19 996032 996847 ZBTB33 GTRD no Lung (A549) 1000418 3571 108349410
chr19 996035 996845 ZBTB33 GTRD no Lung (A549) 1000418 3573 108349411
chr19 996038 996745 TCF7L2 GTRD no Colon (HCT116) 1000418 3673 108349412
chr19 996047 996902 P63 GTRD no Skin (Keratinocyte) 1000418 3516 108349413
chr19 996054 996846 ZNF274 GTRD no Blood (GM12878) 1000418 3572 108349414
chr19 996066 996699 ZNF143 GTRD no Epithelial (MCF-7) 1000418 3719 108349415
chr19 996067 997076 ZNF274 GTRD no Blood (GM12878) 1000418 3342 108349416
chr19 996073 996735 ZNF274 GTRD no Bone Marrow (K562) 1000418 3683 108349417
chr19 996073 996800 ZNF274 GTRD no Liver (HepG2) 1000418 3618 108349418
chr19 996073 997011 ZBTB33 GTRD no Lung (A549) 1000418 3407 108349419
chr19 996080 996993 ZNF274 GTRD no Blood (GM12878) 1000418 3425 108349420
chr19 996086 996662 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 1000418 3756 108349421
chr19 996089 996858 ZNF274 GTRD no Bone Marrow (K562) 1000418 3560 108349422
chr19 996099 996718 ZBTB33 GTRD no Lung (A549) 1000418 3700 108349423
chr19 996102 996786 ZBTB33 GTRD no Lung (A549) 1000418 3632 108349424
chr19 996113 996683 TCF7L2 GTRD no Colon (HCT116) 1000418 3735 108349425
chr19 996115 996861 ZNF274 GTRD no Bone Marrow (K562) 1000418 3557 108349426
chr19 996122 996876 ZBTB33 GTRD no Lung (A549) 1000418 3542 108349427
chr19 996122 996903 ZNF274 GTRD no Bone Marrow (K562) 1000418 3515 108349428
chr19 996130 997070 ZBTB33 GTRD no Lung (A549) 1000418 3348 108349429
chr19 996146 996569 ZNF274 GTRD no Bone Marrow (K562) 1000418 3849 108349430
chr19 996153 996910 ZBTB33 GTRD no Lung (A549) 1000418 3508 108349431
chr19 996164 996866 ZNF274 GTRD no Blood (GM12878) 1000418 3552 108349432
chr19 996172 996799 TCF7L2 GTRD no Colon (HCT116) 1000418 3619 108349433
chr19 996172 996960 ZNF274 GTRD no Bone Marrow (K562) 1000418 3458 108349434
chr19 996174 996910 ZBTB33 GTRD no Lung (A549) 1000418 3508 108349435
chr19 996182 997045 ZNF274 GTRD no Blood (GM12878) 1000418 3373 108349436
chr19 996184 996940 ZNF274 GTRD no Blood (GM12878) 1000418 3478 108349437
chr19 996199 996866 ZNF274 GTRD no Bone Marrow (K562) 1000418 3552 108349438
chr19 996204 997017 ZBTB33 GTRD no Lung (A549) 1000418 3401 108349439
chr19 996206 996946 ZBTB33 GTRD no Lung (A549) 1000418 3472 108349440
chr19 996207 996869 ZNF274 GTRD no Bone Marrow (K562) 1000418 3549 108349441
chr19 996211 996803 ZNF274 GTRD no Blood (GM12878) 1000418 3615 108349442
chr19 996211 996808 ZNF274 GTRD no Blood (GM12878) 1000418 3610 108349443
chr19 996231 996772 ZNF274 GTRD no Bone Marrow (K562) 1000418 3646 108349444
chr19 996234 996906 ZNF274 GTRD no Liver (HepG2) 1000418 3512 108349445
chr19 996251 996894 ZNF274 GTRD no Bone Marrow (K562) 1000418 3524 108349446
chr19 996252 996799 ZNF274 GTRD no Liver (HepG2) 1000418 3619 108349447
chr19 996254 996478 ZNF274 GTRD no Blood (GM12878) 1000418 3940 108349448
chr19 996263 996817 ZNF274 GTRD no Bone Marrow (K562) 1000418 3601 108349449
chr19 996264 996949 ZNF274 GTRD no Bone Marrow (K562) 1000418 3469 108349450
chr19 996265 996845 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 1000418 3573 108349451
chr19 996276 996845 ZNF274 GTRD no Blood (GM12878) 1000418 3573 108349452
chr19 996279 997005 ZNF274 GTRD no Bone Marrow (K562) 1000418 3413 108349453
chr19 996285 996836 ZNF274 GTRD no Bone Marrow (K562) 1000418 3582 108349454
chr19 996288 996884 ZNF274 GTRD no Bone Marrow (K562) 1000418 3534 108349455
chr19 996297 996763 TCF7L2 GTRD no Colon (HCT116) 1000418 3655 108349456
chr19 996297 996817 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 1000418 3601 108349457
chr19 996301 996804 SOX2 GTRD no Neural Stem Cells (H9) 1000418 3614 108349458
chr19 996302 996842 ZNF274 GTRD no Bone Marrow (K562) 1000418 3576 108349459
chr19 996302 996968 ZNF274 GTRD no Bone Marrow (K562) 1000418 3450 108349460
chr19 996302 997000 ZNF274 GTRD no Bone Marrow (K562) 1000418 3418 108349461
chr19 996304 996675 ZBTB33 GTRD no Brain (SK-N-SH) 1000418 3743 108349462
chr19 996321 996874 ZNF274 GTRD no Bone Marrow (K562) 1000418 3544 108349463
chr19 996323 996821 ZNF274 GTRD no Liver (HepG2) 1000418 3597 108349464
chr19 996327 996915 ZBTB33 GTRD no Brain (SK-N-SH) 1000418 3503 108349465
chr19 996331 996562 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 1000418 3856 108349466
chr19 996335 996731 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 1000418 3687 108349467
chr19 996340 996863 ZNF274 GTRD no Liver (HepG2) 1000418 3555 108349468
chr19 996346 996478 ZNF274 GTRD no Blood (GM12878) 1000418 3940 108349469
chr19 996346 996670 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 1000418 3748 108349470
chr19 996350 996726 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 1000418 3692 108349471
chr19 996352 996720 ZNF274 GTRD no Bone Marrow (K562) 1000418 3698 108349472
chr19 996352 996851 ZNF274 GTRD no Blood (GM12878) 1000418 3567 108349473
chr19 996353 996736 ZNF274 GTRD no Bone Marrow (K562) 1000418 3682 108349474
chr19 996356 996746 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 1000418 3672 108349475
chr19 996365 996974 ZNF274 GTRD no Blood (GM12878) 1000418 3444 108349476
chr19 996378 996908 ZBTB33 GTRD no Lung (A549) 1000418 3510 108349477
chr19 996381 996754 ZNF274 GTRD no Liver (HepG2) 1000418 3664 108349478
chr19 996382 996813 ZNF274 GTRD no Blood (GM12878) 1000418 3605 108349479
chr19 996383 996811 ZNF274 GTRD no Bone Marrow (K562) 1000418 3607 108349480
chr19 996385 996811 ZNF274 GTRD no Bone Marrow (K562) 1000418 3607 108349481
chr19 996396 996686 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 1000418 3732 108349482
chr19 996401 996405 H4TF2 TRANSFAC yes 1000418 4013 70778315
chr19 996402 996857 ZNF274 GTRD no Blood (GM12878) 1000418 3561 108349483
chr19 996413 996900 ZNF274 GTRD no Liver (HepG2) 1000418 3518 108349484
chr19 996414 996668 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 1000418 3750 108349485
chr19 996414 996707 JUND UCSC Txn Factor no Conserved 1000418 3711 108349486
chr19 996416 996660 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 1000418 3758 108349487
chr19 996416 996715 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 1000418 3703 108349488
chr19 996435 996440 SP1 TRANSFAC yes 1000418 3978 70778316
chr19 996436 996918 ZNF274 GTRD no Blood (GM12878) 1000418 3500 108349489
chr19 996438 996718 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 1000418 3700 108349490
chr19 996439 996817 ZNF274 GTRD no Liver (HepG2) 1000418 3601 108349491
chr19 996440 996664 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 1000418 3754 108349492
chr19 996440 996668 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 1000418 3750 108349493
chr19 996441 996934 ZNF274 GTRD no Blood (GM12878) 1000418 3484 108349494
chr19 996448 996453 MYC TRANSFAC yes 1000418 3965 70778317
chr19 996448 996692 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 1000418 3726 108349495
chr19 996475 996858 ZNF274 GTRD no Blood (GM12878) 1000418 3560 108349496
chr19 996477 996639 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 1000418 3779 108349497
chr19 996482 996712 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 1000418 3706 108349498
chr19 996490 996670 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 1000418 3748 108349499
chr19 996514 996524 EN2 JASPAR yes 1000418 3894 70778318
chr19 996515 996523 DLX6 JASPAR yes 1000418 3895 70778319
chr19 996515 996523 MSX1 JASPAR yes 1000418 3895 70778320
chr19 996525 996829 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 1000418 3589 108349500
chr19 996525 997031 ZNF274 GTRD no Bone Marrow (K562) 1000418 3387 108349501
chr19 996529 996545 RFX5 JASPAR yes 1000418 3873 70778321
chr19 996530 996549 RFX2 JASPAR yes 1000418 3869 70778322
chr19 996535 996545 NFATC3 JASPAR yes 1000418 3873 70778323
chr19 996537 996545 FOXO3 JASPAR yes 1000418 3873 70778324
chr19 996539 996799 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 1000418 3619 108349502
chr19 996544 996559 JUND JASPAR yes 1000418 3859 70778325
chr19 996545 996558 JUN JASPAR yes 1000418 3860 70778326
chr19 996546 996560 ATF7 JASPAR yes 1000418 3858 70778327
chr19 996546 996560 BATF3 JASPAR yes 1000418 3858 70778328
chr19 996546 996560 CREB3 JASPAR yes 1000418 3858 70778329
chr19 996547 996559 HLF JASPAR yes 1000418 3859 70778330
chr19 996547 996559 JDP2 JASPAR yes 1000418 3859 70778331
chr19 996547 996562 JUND JASPAR yes 1000418 3856 70778332
chr19 996548 996561 JUN JASPAR yes 1000418 3857 70778333
chr19 996549 996554 ATF1 TRANSFAC yes 1000418 3864 70778334
chr19 996549 996557 CREB1 JASPAR yes 1000418 3861 70778335
chr19 996551 996556 ATF1 TRANSFAC yes 1000418 3862 70778336
chr19 996564 996578 GLIS2 JASPAR yes 1000418 3840 70778337
chr19 996567 996576 SP1 TRANSFAC yes 1000418 3842 70778338
chr19 996568 996574 SP1 TRANSFAC yes 1000418 3844 70778339
chr19 996568 996578 SP1 JASPAR yes 1000418 3840 70778340
chr19 996569 996576 SP1 TRANSFAC yes 1000418 3842 70778341
chr19 996570 996575 SP1 TRANSFAC yes 1000418 3843 70778342
chr19 996570 996576 SP1 TRANSFAC yes 1000418 3842 70778343
chr19 996570 996577 SP1 TRANSFAC yes 1000418 3841 70778344
chr19 996573 996587 PLAG1 JASPAR yes 1000418 3831 70778345
chr19 996616 996621 TFAP2A TRANSFAC yes 1000418 3797 70778346
chr19 996616 996622 MZF1 JASPAR yes 1000418 3796 70778347
chr19 996639 996651 HINFP JASPAR yes 1000418 3767 70778348
chr19 996656 996667 USF1 JASPAR yes 1000418 3751 70778349
chr19 996656 996667 USF2 JASPAR yes 1000418 3751 70778350
chr19 996659 996673 CREB3L1 JASPAR yes 1000418 3745 70778351
chr19 996675 996680 SP1 TRANSFAC yes 1000418 3738 70778352
chr19 996675 996681 SP1 TRANSFAC yes 1000418 3737 70778353
chr19 996679 996699 TP63 JASPAR yes 1000418 3719 70778354
chr19 996692 996707 RUNX2 JASPAR yes 1000418 3711 70778355
chr19 996714 996733 REST JASPAR yes 1000418 3685 70778356
chr19 996724 996736 PKNOX1 JASPAR yes 1000418 3682 70778357
chr19 996724 996736 PKNOX2 JASPAR yes 1000418 3682 70778358
chr19 996724 996736 TGIF1 JASPAR yes 1000418 3682 70778359
chr19 996724 996736 TGIF2 JASPAR yes 1000418 3682 70778360
chr19 996725 996735 MSC JASPAR yes 1000418 3683 70778361
chr19 996725 996735 MYF6 JASPAR yes 1000418 3683 70778362
chr19 996730 996739 THAP1 JASPAR yes 1000418 3679 70778363
SNPs associated with GRIN3B[ENSG00000116032.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr19 1021627 rs117481827 T C 11896 Lung 0.000788371 5370746
Details of GRIN3B[ENSG00000116032.5]
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Genomic Location chr19:1000418-1009731[+]
TSS 1000418
Gene Name GRIN3B
Ensembl ID ENSG00000116032.5
ENTREZID 116444
Uniprot
Q5F0I5
O60391
Protein Name
NMDA 3B
Glutamate receptor ionotropic
NMDA receptor subunit 3B
Expression levels of GRIN3B[ENSG00000116032.5]
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