EnhancerDB
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Enhancers that regulate IGSF3[ENSG00000143061.13]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 117110819 117111247 vista3070 117210375 99128
VISTA
chr1 117111804 117112156 vista3071 117210375 98219
VISTA
chr1 117112460 117112738 vista3072 117210375 97637
VISTA
chr1 117129425 117129671 vista3073 117210375 80704
VISTA
chr1 117130518 117130699 vista3074 117210375 79676
VISTA
chr1 117131287 117136123 enh89499 117210375 74252
Prostate (RWPE1)
chr1 117132073 117132239 vista3075 117210375 78136
VISTA
chr1 117136846 117142447 enh49952 117210375 67928
Bone Marrow (K562) Stomach Large Intestine Blood (GM12878)
chr1 117159805 117188375 enh12186 117210375 22000
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Stomach Placenta Colon (HCT116) Thyroid Lung (PC-9) Heart
chr1 117169735 117170114 vista3076 117210375 40261
VISTA
chr1 117189829 117194519 enh61895 117210375 15856
Esophagus
chr1 117214945 117227574 enh12187 117210375 4570
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Prostate (RWPE1) Esophagus Placenta Lung (PC-9) Epithelial (MCF-7)
chr1 117234489 117244529 enh43033 117210375 24114
Prostate (PC-3) Brain (SK-N-SH) Esophagus Muscle (A673) Muscle (Myoblast) Muscle (Myotube)
chr1 117246825 117269613 enh43034 117210375 36450
Skin (Keratinocyte) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Blood (OCI-LY7) Stomach Muscle (A673) Lung (PC-9) Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
chr1 117256857 117256976 vista3077 117210375 46482
VISTA
chr1 117274325 117283914 enh47231 117210375 63950
Brain (SK-N-SH) Blood (T-cell) Esophagus Blood (OCI-LY7) Blood (GM12878) Peripheral Blood (MM.1S) Thymus
chr1 117280613 117280924 vista3078 117210375 70238
VISTA
chr1 117281390 117281752 vista3079 117210375 71015
VISTA
chr1 117298565 117302975 enh90709 117210375 88190
Bone Marrow (K562)
chr1 117304805 117308955 enh12188 117210375 94430
Placenta
chr1 117305811 117306472 vista3080 117210375 95436
VISTA
Transcript facotrs that regulate IGSF3[ENSG00000143061.13]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 117215175 117215535 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 117210375 4800 21333512
chr1 117215182 117215552 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 117210375 4807 21333513
chr1 117215219 117215489 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 117210375 4844 21333514
chr1 117215224 117215514 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 117210375 4849 21333515
chr1 117215226 117215506 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 117210375 4851 21333516
chr1 117215264 117215471 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 117210375 4889 21333517
chr1 117215278 117215454 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 117210375 4903 21333518
chr1 117215285 117215483 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 117210375 4910 21333519
chr1 117215299 117215469 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 117210375 4924 21333520
chr1 117215312 117215431 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 117210375 4937 21333521
chr1 117215318 117215445 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 117210375 4943 21333522
SNPs associated with IGSF3[ENSG00000143061.13], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 118203508 rs12239564 T A 993133 Esophagus 0.260668 596857
chr1 117164591 rs12750589 A G 0 Esophagus 1.63073e-05 590024
chr1 117214318 rs145720526 T TA 3943 Esophagus 0.227567 590377
chr1 117248192 rs145504375 C A,T 37817 Heart 0.0023227 590724
chr1 116711805 rs80137629 C A 405226 Spleen 0.016389 585902
chr1 117593698 rs73004175 C T 383323 Ovary 0.304468 593504
chr1 117016646 rs6661803 C T 100385 Uterus 0.481674 588969
chr1 116850983 rs77620878 G A 266048 Thyroid 0.0826741 587435
chr1 118105554 rs6684265 G A 895179 Lung 0.134487 595934
chr1 116772778 rs78787230 G A,T 344253 Adrenal 0.405513 586481
Details of IGSF3[ENSG00000143061.13]
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Genomic Location chr1:117117031-117210375[-]
TSS 117210375
Gene Name IGSF3
Ensembl ID ENSG00000143061.13
ENTREZID 3321
Uniprot
O75054
Protein Name
Immunoglobulin superfamily member 3
Expression levels of IGSF3[ENSG00000143061.13]
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