EnhancerDB
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Enhancers that regulate GEMIN4[ENSG00000179409.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 568965 574535 enh89835 657239 82704
Stomach Prostate (RWPE1) Lung (PC-9)
chr17 574639 574965 vista23616 657239 82274
VISTA
chr17 576455 576740 vista23617 657239 80499
VISTA
chr17 581785 587375 enh16916 657239 69864
Astrocyte Bone (Osteoblast) Muscle (A673) Placenta Muscle (Myoblast) Muscle (Myotube)
chr17 592721 600015 enh16917 657239 57224
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Uterus Epithelial (MCF-7)
chr17 594616 594984 vista23618 657239 62255
VISTA
chr17 595370 595681 vista23619 657239 61558
VISTA
chr17 597415 597783 vista23620 657239 59456
VISTA
chr17 654300 654699 vista23621 657239 2540
VISTA
chr17 690489 700425 enh52399 657239 33250
Large Intestine Esophagus Muscle (A673) Colon (HCT116) Pancreas Uterus Stomach
chr17 693293 693510 vista23622 657239 36054
VISTA
chr17 698193 698349 vista23623 657239 40954
VISTA
chr17 730064 734402 enh102553 657239 72825
Bone (Osteoblast)
chr17 736421 741831 enh32035 657239 79182
Large Intestine Astrocyte Bone (Osteoblast) Colon (HCT116) Uterus Muscle (Myoblast) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Stomach
chr17 748185 757455 enh32036 657239 90946
Esophagus Astrocyte Stomach Muscle (Myoblast) Uterus Heart
chr17 753267 753352 vista23624 657239 96028
VISTA
Transcript facotrs that regulate GEMIN4[ENSG00000179409.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 654304 654310 SP1 TRANSFAC yes 657239 2929 21179471
chr17 654305 654310 SP1 TRANSFAC yes 657239 2929 21179472
chr17 654317 654327 NFATC3 JASPAR yes 657239 2912 21179473
chr17 654319 654326 NFATC2 JASPAR yes 657239 2913 21179474
chr17 654336 654736 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 657239 2503 108227759
chr17 654338 654342 NFE TRANSFAC yes 657239 2897 21179475
chr17 654350 654360 HMBOX1 JASPAR yes 657239 2879 21179476
chr17 654351 654359 LBX1 JASPAR yes 657239 2880 21179477
chr17 654352 654355 MYB TRANSFAC yes 657239 2884 21179478
chr17 654409 654430 REST JASPAR yes 657239 2809 21179479
chr17 654420 654437 RXRA JASPAR yes 657239 2802 21179480
chr17 654455 654468 SCRT2 JASPAR yes 657239 2771 21179481
chr17 654477 656401 POLR2A UCSC Txn Factor no Conserved 657239 838 108227760
chr17 654485 654499 GATA2 JASPAR yes 657239 2740 21179482
chr17 654487 654495 GATA3 JASPAR yes 657239 2744 21179483
chr17 654487 654495 GATA5 JASPAR yes 657239 2744 21179484
chr17 654511 654529 MAFF JASPAR yes 657239 2710 21179485
chr17 654513 654524 NRL JASPAR yes 657239 2715 21179486
chr17 654513 654528 MAFK JASPAR yes 657239 2711 21179487
chr17 654543 654548 SP1 TRANSFAC yes 657239 2691 21179488
chr17 654546 654556 SP1 JASPAR yes 657239 2683 21179489
chr17 654552 654557 ETS2 TRANSFAC yes 657239 2682 21179490
chr17 654556 654566 EN2 JASPAR yes 657239 2673 21179491
chr17 654557 654565 DLX6 JASPAR yes 657239 2674 21179492
chr17 654557 654565 MSX1 JASPAR yes 657239 2674 21179493
chr17 654610 654620 MSC JASPAR yes 657239 2619 21179494
chr17 654615 654619 NFE TRANSFAC yes 657239 2620 21179495
chr17 654616 654628 INSM1 JASPAR yes 657239 2611 21179496
chr17 654621 654628 SP1 TRANSFAC yes 657239 2611 21179497
chr17 654621 654631 SP1 JASPAR yes 657239 2608 21179498
chr17 654622 654630 SP1 TRANSFAC yes 657239 2609 21179499
chr17 654622 654631 SP1 TRANSFAC yes 657239 2608 21179500
chr17 654622 654632 SP1 JASPAR yes 657239 2607 21179501
chr17 654623 654628 SP1 TRANSFAC yes 657239 2611 21179502
chr17 654624 654629 SP1 TRANSFAC yes 657239 2610 21179503
chr17 654624 654630 SP1 TRANSFAC yes 657239 2609 21179504
chr17 654638 654642 YY1 TRANSFAC yes 657239 2597 21179505
chr17 654642 654654 TFAP2A JASPAR yes 657239 2585 21179506
chr17 654653 654671 MAFF JASPAR yes 657239 2568 21179507
chr17 654655 654666 NRL JASPAR yes 657239 2573 21179508
chr17 654655 654670 MAFK JASPAR yes 657239 2569 21179509
SNPs associated with GEMIN4[ENSG00000179409.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 655493 rs1884727 C G 0 Esophagus 0.0583581 4685371
chr17 655611 rs2251564 A G 0 Esophagus 0.0923774 4685375
chr17 774505 rs55756460 G A 117266 Esophagus 0.326449 4686319
chr17 806905 rs116465838 G A 149666 Heart 0.0987444 4686885
chr17 827476 rs57175223 C CTTAT 170237 Heart 0.209446 4687155
chr17 581967 rs34483887 C T 65687 Pancreas 0.000145568 4685045
chr17 816250 rs7220717 T C 159011 Spleen 0.214658 4686912
chr17 846680 rs78632458 C T 189441 Uterus 0.364773 4687568
chr17 806071 rs589781 T A 148832 Liver 0.458093 4686872
Details of GEMIN4[ENSG00000179409.6]
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Genomic Location chr17:647654-657239[-]
TSS 657239
Gene Name GEMIN4
Ensembl ID ENSG00000179409.6
ENTREZID 50628
Uniprot
I3L2C7
Q8WUM5
P57678
Protein Name
Gem
Gem-associated protein 4
Expression levels of GEMIN4[ENSG00000179409.6]
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