EnhancerDB
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Enhancers that regulate SGCA[ENSG00000108823.11]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 48173425 48181455 enh44447 48241575 60120
Liver (HepG2) Large Intestine Ovary Lung (PC-9) Stomach Muscle (A673) Colon (HCT116) Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Heart
chr17 48187066 48191216 enh65050 48241575 50359
Heart
chr17 48205107 48205461 vista25095 48241575 36114
VISTA
chr17 48206052 48206167 vista25096 48241575 35408
VISTA
chr17 48208282 48208563 vista25097 48241575 33012
VISTA
chr17 48219805 48226495 enh4462 48241575 15080
Blood (Karpas-422)
chr17 48228924 48229616 vista25098 48241575 11959
VISTA
chr17 48230545 48234695 enh17214 48241575 6880
Placenta
chr17 48251038 48251269 vista25099 48241575 9463
VISTA
chr17 48252339 48263735 enh17215 48241575 10764
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Ovary Bone (Osteoblast) Lung Stomach Placenta Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Heart
chr17 48255388 48256117 vista25100 48241575 13813
VISTA
chr17 48270577 48274771 enh115635 48241575 29002
Brain (SK-N-SH)
chr17 48279381 48302635 enh17216 48241575 37806
Bone Marrow (K562) Liver Astrocyte Embryonic Stem Cell Line (H1-hESC) Uterus Kidney Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr17 48280500 48280887 vista25101 48241575 38925
VISTA
chr17 48281415 48281783 vista25102 48241575 39840
VISTA
chr17 48282931 48283079 vista25103 48241575 41356
VISTA
chr17 48287695 48288075 vista25104 48241575 46120
VISTA
chr17 48288364 48288588 vista25105 48241575 46789
VISTA
chr17 48290532 48290619 vista25106 48241575 48957
VISTA
chr17 48294109 48294288 vista25107 48241575 52534
VISTA
chr17 48299652 48299873 vista25108 48241575 58077
VISTA
chr17 48316345 48320495 enh99428 48241575 74770
Uterus
chr17 48333165 48343735 enh44448 48241575 91590
Muscle (Myotube) Uterus Stomach
chr17 48338432 48338651 vista25109 48241575 96857
VISTA
Transcript facotrs that regulate SGCA[ENSG00000108823.11]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with SGCA[ENSG00000108823.11], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 48251111 rs2586476 T C 0 Heart 0.225141 4921215
chr17 48036773 rs4794080 C T 204802 Ovary 0.0315943 4919528
chr17 48252239 rs2696289 C T 0 Uterus 3.10407e-10 4921236
Details of SGCA[ENSG00000108823.11]
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Genomic Location chr17:48241575-48253292[+]
TSS 48241575
Gene Name SGCA
Ensembl ID ENSG00000108823.11
ENTREZID 6442
Uniprot
A0A0S2Z4P8
Q16586
A0A0S2Z4Q1
Protein Name
Alpha-sarcoglycan
Alternative protein SGCA
Sarcoglycan alpha isoform 1
Sarcoglycan alpha isoform 2
Expression levels of SGCA[ENSG00000108823.11]
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